Search results for "Mikroskopi"
showing 10 items of 75 documents
A New Species of the Genus Crenubiotus (Tardigrada: Eutardigrada: Adorybiotidae) from Salt Spring Island, Strait of Georgia, British Columbia (Canada)
2022
Currently, the recently erected genus Crenubiotus (Adorybiotidae, Macrobiotoidea) includes only three species, all of which are characterised by dentate lunulae and cuticular tubercules organised in the band in the dorso-caudal part of the body. By means of integrative taxonomy, we describe a fourth species of the genus: Crenubiotus salishani sp. nov., from Salt Spring Island in British Columbia, Canada. The new species has been found in the moss growing on rock and differs from the other species in the genus due to the presence of a median anterior mucrone in the third band of the oral cavity armature (OCA) and by the presence of evident thickenings on the eggshell connecting the neighbour…
How and why does willow biochar increase a clay soil water retention capacity?
2018
Addition of biochar into a soil changes its water retention properties by modifying soil textural and structural properties. In addition, internal micrometer-scale porosity that is able to directly store readily plant available water affects soil water retention properties. This study shows how precise knowledge of the internal micrometer-scale pore size distribution of biochar can deepen the understanding of the biochar-water interactions in soils. The micrometer-scale porosity of willow biochar was quantitatively and qualitatively characterized using X-ray tomography, 3D image analysis and Helium ion microscopy. The effect of biochar application on clay soil water retention was studied by…
Force measurements and tip shape approximation with the atomic force microscope
2011
The Atomic Force Microscope (AFM) is an instrument with huge impact on modern research in the nanosciences and in nanotechnology. In AFM, a tip which is sharp on a scale of nanometers or tens of nanometers, is scanning along the surface which is imaged. A few among the large numbers of factors that potentially affect the interaction between the tip and the surface were studied in the experimental work that form this Thesis. Friction and elasticity measurements with AFM and the approximation of the tip shape are discussed. Also the contribution of the imaging environment is studied. A commercial AFM was modified into a so called environmental-AFM (env- AFM) , where the imaging conditions, su…
Resolving Bio-Nano Interactions of E.coli Bacteria-Dragonfly Wing Interface with Helium Ion and 3D-Structured Illumination Microscopy to Understand B…
2020
Obtaining a comprehensive understanding of the bactericidal mechanisms of natural nanotextured surfaces is crucial for the development of fabricated nanotextured surfaces with efficient bactericidal activity. However, the scale, nature, and speed of bacteria-nanotextured surface interactions make the characterization of the interaction a challenging task. There are currently several different opinions regarding the possible mechanisms by which bacterial membrane damage occurs upon interacting with nanotextured surfaces. Advanced imaging methods could clarify this by enabling visualization of the interaction. Charged particle microscopes can achieve the required nanoscale resolution but are …
Comparison of epifluorescence microscopy and flow cytometry in counting freshwater picophytoplankton
2021
The smaller the phytoplankton, the greater effort is required to distinguish individual cells by optics-based methods. Flow cytometry is widely applied in marine picophytoplankton research, but in freshwater research its role has remained minor. We compared epifluorescence microscopy and flow cytometry in assessing the composition, abundance and cell sizes of autofluorescent picophytoplankton in epilimnia of 46 Finnish lakes. Phycocyaninrich picocyanobacteria were the most dominant. The two methods yielded comparable total picophytoplankton abundances, but the determination of cell sizes, and thus total biomasses, were on average an order of magnitude higher in the microscopy results. Howev…
Aqueous foam as the carrier phase in the deposition of fibre networks
2015
Cellulose nanofibrils prepared by gentle drying methods reveal the limits of helium ion microscopy imaging
2019
TEMPO-oxidized cellulose nanofibrils (TCNFs) have unique properties, which can be utilised in many application fields from printed electronics to packaging. Visual characterisation of TCNFs has been commonly performed using Scanning Electron Microscopy (SEM). However, a novel imaging technique, Helium Ion Microscopy (HIM), offers benefits over SEM, including higher resolution and the possibility of imaging non-conductive samples uncoated. HIM has not been widely utilized so far, and in this study the capability of HIM for imaging of TCNFs was evaluated. Freeze drying and critical point drying (CPD) techniques were applied to preserve the open fibril structure of the gel-like TCNFs. Both dr…
Characterization of spatial porosity and mineral distribution of crystalline rock using X-ray micro computed tomography, C-14-PMMA autoradiography an…
2019
The spatial porosity and mineral distribution of geological materials strongly affects transport processes in them. X-ray micro computed tomography (X-mu CT) has proven to be a powerful tool for characterizing the spatial mineral distribution of geological samples in 3-D. However, limitations in resolution prevent an accurate characterization of pore space especially for tight crystalline rock samples and 2-D methods such as C-14-polymethylmethacrylate (C-14-PMMA) autoradiography and scanning electron microscopy (SEM) are needed. The spatial porosity and mineral distributions of tight crystalline rock samples from Aspo, Sweden, and Olkiluoto, Finland, were studied here. The X-mu CT were use…
Rasterikuvakorrelaatiospektroskopiamittauksia Nikon A1R+ -konfokaalimikroskoopilla
2014
Rasterikuvakorrelaatiospektroskopia (RICS) on kvantitatiivinen mikroskopiamenetelmä molekyylidynamiikan tutkimiseen kaksiulotteisista konfokaalikuvista. Tutkielmassa käydään läpi menetelmän teoreettiset ja kokeelliset lähtökohdat, ja niiden pohjalta määritetään kaupallisen konfokaalimikroskooppijärjestelmän (Nikon A1R+, Jyväskylän yliopiston Nanotiedekeskus) soveltuvuus diffuusion mittaamiseen RICS-menetelmällä. Järjestelmän havaittiin soveltuvan heikosti erityisesti nopeiden molekyylien, kuten EGFP-proteiinin mittaamiseen. Suurin haitta oli ilmaisimen häiriösignaali, jonka seurauksena korrelaatioanalyysin tulokset poikkesivat merkittävästi kirjallisuusarvoista. Työssä tehtiin lisäksi yleis…
Consistency of Targeted Metatranscriptomics and Morphological Characterization of Phytoplankton Communities
2020
The composition of phytoplankton community is the basis for environmental monitoring and assessment of the ecological status of aquatic ecosystems. Community composition studies of phytoplankton have been based on time-consuming and expertise-demanding light microscopy analyses. Molecular methods have the potential to replace microscopy, but the high copy number variation of ribosomal genes and the lack of universal primers for simultaneous amplification of prokaryotic and eukaryotic genes complicate data interpretation. In this study, we used our previously developed directional primer-independent high-throughput sequencing (HTS) approach to analyze 16S and 18S rRNA community structures. C…