Search results for "Mining"

Geomeasure: GIS and Scripting for Measuring Morphometric Variability

2019

This paper presents Geomeasure, a methodological tool developed to recover typometric information with a twofold objective. First, to speed up the process of gathering data by automatizing the way in which it is recovered. Second, it adds higher accuracy and the possibility of re-measuring archeological items without further directly interacting with the piece. Based on a combination of R scripting with GIS features, Geomeasure is at the time able to automatically gather 125–130 typometric variables per archaeological item, with the only input of vectorized photographs. It can be used as a reliable methodological aid to extract detailed information on patterns and trends of shape variabilit…

Comment on the letter of the Society of Vertebrate Paleontology (SVP) dated April 21, 2020 regarding “Fossils from conflict zones and reproducibility…

2020

Motivation for this comment Recently, the Society of Vertebrate Paleontology (SVP) has sent around a letter, dated 21st April, 2020 to more than 300 palaeontological journals, signed by the President, Vice President and a former President of the society (Rayfield et al. 2020). The signatories of this letter request significant changes to the common practices in palaeontology. With our present, multi-authored comment, we aim to argue why these suggestions will not lead to improvement of both practice and ethics of palaeontological research but, conversely, hamper its further development. Although we disagree with most contents of the SVP letter, we appreciate this initiative to discuss scien…

Summarizing the state of the terrestrial biosphere in few dimensions

2020

Abstract. In times of global change, we must closely monitor the state of the planet in order to understand the full complexity of these changes. In fact, each of the Earth's subsystems – i.e., the biosphere, atmosphere, hydrosphere, and cryosphere – can be analyzed from a multitude of data streams. However, since it is very hard to jointly interpret multiple monitoring data streams in parallel, one often aims for some summarizing indicator. Climate indices, for example, summarize the state of atmospheric circulation in a region. Although such approaches are also used in other fields of science, they are rarely used to describe land surface dynamics. Here, we propose a robust method to crea…

PNR-35CNS HGNET-BCOR - MOLECULAR CHARACTERIZATION AND IDENTIFICATION OF POSSIBLE THERAPEUTIC TARGETS OF A NEW BRAIN TUMOR ENTITY

2016

X!TandemPipeline: a tool to manage sequence redundancy for protein inference and phosphosite identification

2017

X!TandemPipeline is a software designed to perform protein inference and to manage redundancy in the results of phosphosite identification by database search. It provides the minimal list of proteins or phosphosites that are present in a set of samples using grouping algorithms based on the principle of parsimony. Regarding proteins, a two-level classification is performed, where groups gather proteins sharing at least one peptide and subgroups gather proteins that are not distinguishable according to the identified peptides. Regarding phosphosites, an innovative approach based on the concept of phosphoisland is used to gather overlapping phosphopeptides. The graphical interface of X!Tandem…

Epifaunal and infaunal responses to submarine mine tailings in a Norwegian fjord.

2019

Abstract Disposal of mine tailings in marine shallow water ecosystems represents an environmental challenge, and the present paper reports results from a field study in Fraenfjorden, Norway, which is subject to such disposal. Structural and functional responses of benthic infauna and epifauna were investigated along a gradient from heavy tailings deposition to reference conditions. The tailings clearly impacted the faunal composition, with lowered species number close to the outfall. Total abundance of infauna increased in the most impacted area due to dominance of opportunistic species, whereas the epifauna was reduced and represented by a few scattered specimens only. In the most impacted…

Model‐based approaches to unconstrained ordination

2014

Summary Unconstrained ordination is commonly used in ecology to visualize multivariate data, in particular, to visualize the main trends between different sites in terms of their species composition or relative abundance. Methods of unconstrained ordination currently used, such as non-metric multidimensional scaling, are algorithm-based techniques developed and implemented without directly accommodating the statistical properties of the data at hand. Failure to account for these key data properties can lead to misleading results. A model-based approach to unconstrained ordination can address this issue, and in this study, two types of models for ordination are proposed based on finite mixtu…

A Methodology to Derive Global Maps of Leaf Traits Using Remote Sensing and Climate Data

2018

This paper introduces a modular processing chain to derive global high-resolution maps of leaf traits. In particular, we present global maps at 500 m resolution of specific leaf area, leaf dry matter content, leaf nitrogen and phosphorus content per dry mass, and leaf nitrogen/phosphorus ratio. The processing chain exploits machine learning techniques along with optical remote sensing data (MODIS/Landsat) and climate data for gap filling and up-scaling of in-situ measured leaf traits. The chain first uses random forests regression with surrogates to fill gaps in the database (> 45% of missing entries) and maximizes the global representativeness of the trait dataset. Plant species are then a…

Distribution of sea urchins living near shallow water CO2 vents is dependent upon species acid-base and ion-regulatory abilities.

2013

To reduce the negative effect of climate change on Biodiversity, the use of geological CO2 sequestration has been proposed; however leakage from underwater storages may represent a risk to marine life. As extracellular homeostasis is important in determining species' ability to cope with elevated CO2, we investigated the acid-base and ion regulatory responses, as well as the density, of sea urchins living around CO2 vents at Vulcano, Italy. We conducted in situ transplantation and field-based laboratory exposures to different pCO2/pH regimes. Our results confirm that sea urchins have some ability to regulate their extracellular fluid under elevated pCO2. Furthermore, we show that even in cl…

Spatio-Temporal model structures with shared components for semi-continuous species distribution modelling

2017

Abstract Understanding the spatio-temporal dynamism and environmental relationships of species is essential for the conservation of natural resources. Many spatio-temporally sampled processes result in continuous positive [ 0 , ∞ ) abundance datasets that have many zero values observed in areas that lie outside their optimum niche. In such cases the most common option is to use two-part or hurdle models, which fit independent models and consequently independent environmental effects to occurrence and conditional-to-presence abundance. This may be correct in some cases, but not as much in others where the detection probability is related to the abundance. The aim of this work is to infer the…