Search results for "Models"

showing 10 items of 8211 documents

Truncated TrkB receptor-induced outgrowth of dendritic filopodia involves the p75 neurotrophin receptor.

2004

The Trk family of receptor tyrosine kinases and the p75 receptor (p75NTR) mediate the effects of neurotrophins on neuronal survival, differentiation and synaptic plasticity. The neurotrophin BDNF and its cognate receptor tyrosine kinase, TrkB.FL, are highly expressed in neurons of the central nervous system. At later stages in postnatal development the truncated TrkB splice variants (TrkB.T1, TrkB.T2) become abundant. However, the signalling and function of these truncated receptors remained largely elusive.We show that overexpression of TrkB.T1 in hippocampal neurons induces the formation of dendritic filopodia, which are known precursors of synaptic spines. The induction of filopodia by T…

Time FactorsGreen Fluorescent ProteinsReceptors Nerve Growth FactorTropomyosin receptor kinase ATransfectionTropomyosin receptor kinase CHippocampusModels BiologicalPC12 CellsReceptor Nerve Growth FactorReceptor tyrosine kinaseLow-affinity nerve growth factor receptorAnimalsReceptor trkBNerve Growth FactorsPseudopodiaCloning MolecularNeuronsbiologyDose-Response Relationship Drugmusculoskeletal neural and ocular physiologyCell DifferentiationCell BiologyDendritesImmunohistochemistryDendritic filopodiaCell biologyProtein Structure TertiaryRatsnervous systemMicroscopy FluorescenceTrk receptorembryonic structuresNeurotrophin bindingCOS Cellsbiology.proteinsense organsNeurotrophinProtein BindingSignal TransductionJournal of cell science
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Function of DcuS from Escherichia coli as a Fumarate-stimulated Histidine Protein Kinase in Vitro

2002

The two-component regulatory system DcuSR of Escherichia coli controls the expression of genes of C(4)-dicarboxylate metabolism in response to extracellular C(4)- dicarboxylates such as fumarate or succinate. DcuS is a membrane-integral sensor kinase, and the sensory and kinase domains are located on opposite sides of the cytoplasmic membrane. The intact DcuS protein (His(6)-DcuS) was overproduced and isolated in detergent containing buffer. His(6)-DcuS was reconstituted into liposomes made from E. coli phospholipids. Reconstituted His(6)-DcuS catalyzed, in contrast to the detergent-solubilized sensor, autophosphorylation by [gamma-(33)P]ATP with an approximate K(D) of 0.16 mm for ATP. Up t…

Time FactorsHistidine KinaseProteolipidsDetergentsBiologymedicine.disease_causeModels BiologicalBiochemistryAdenosine TriphosphateFumaratesEscherichia colimedicinePhosphorylationPromoter Regions GeneticProtein kinase AMolecular BiologyEscherichia coliDose-Response Relationship DrugKinaseEscherichia coli ProteinsCell MembraneAutophosphorylationDNACell BiologyTransmembrane proteinDNA-Binding ProteinsKineticsResponse regulatorBiochemistryLiposomesPhosphorylationSignal transductionProtein KinasesProtein BindingSignal TransductionTranscription FactorsJournal of Biological Chemistry
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The effect of long-chain bases on polysialic acid-mediated membrane interactions

2011

AbstractNegatively-charged polysialic acid (polySia) chains are usually membrane-bound and are often expressed on the surface of neuroinvasive bacterial cells, neural cells, and tumor cells. PolySia can mediate both repulsive and attractive cis interactions between membrane components, and trans interactions between membranes. Positively-charged long-chain bases are widely present in cells, are often localized in membranes and can function as bioactive lipids. Here we use Langmuir monolayer technique, fluorescence spectroscopy and electron microscopy of lipid vesicles to study the role of a simple long-chain base, octadecylamine (ODA), in both cis and trans interactions mediated by polySia …

Time FactorsLipid BilayersBiophysicsPolysialic acidPhospholipid monolayerBiochemistryFluorescenceMembrane LipidsMicroscopy Electron TransmissionMonolayerPressureElectron microscopyMoleculeAminesLipid bilayerLiposomeModels StatisticalChemistryPolysialic acidVesicleCell MembraneOctadecylamineCell BiologyHydrogen-Ion ConcentrationHydrocarbonsLiposomeMicroscopy ElectronSpectrometry FluorescenceMembraneBiochemistryLiposomesPhosphatidylcholinesSialic AcidsBiophysicsThermodynamicsCis–trans isomerismBiochimica et Biophysica Acta (BBA) - Biomembranes
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Acoustic methods for measuring the porosities of porous materials incorporating dead-end pores

2013

International audience; The acoustic properties of porous materials containing dead-end (DE) pores have been proposed by Dupont et al. [J. Appl. Phys. 110, 094903 (2011)]. In the theoretical description, two physical parameters were defined (the dead-end porosity and the average length of the dead-end pores). With the knowledge of the open porosity (measured with non-acoustic methods), and the measurement of kinematic porosity (also called the Biot porosity in this article), it is possible to deduce the dead-end porosity. Two acoustic methods for measuring the Biot porosity for a wide range of porosities are proposed. These methods are based on acoustic transmission and on the low and high …

Time FactorsMaterials scienceAcoustics and Ultrasonics02 engineering and technologyLow frequency01 natural sciencesMotionViscosityBiot porosityArts and Humanities (miscellaneous)0103 physical sciencesPressureComputer SimulationUltrasonicsTransmission coefficientComposite materialPorosity010301 acoustics[ PHYS.MECA.ACOU ] Physics [physics]/Mechanics [physics]/Acoustics [physics.class-ph][SPI.ACOU]Engineering Sciences [physics]/Acoustics [physics.class-ph]Biot numberViscosity[ SPI.ACOU ] Engineering Sciences [physics]/Acoustics [physics.class-ph]transmission tubeReproducibility of ResultsSignal Processing Computer-AssistedAcousticsEquipment DesignModels Theoretical021001 nanoscience & nanotechnology[PHYS.MECA.ACOU]Physics [physics]/Mechanics [physics]/Acoustics [physics.class-ph]SoundUltrasonic sensorPhase velocity0210 nano-technologyPorous mediumPorosityporous materials
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Mobility determination of lead isotopes in glass for retrospective radon measurements

2008

In retrospective radon measurements, the 22-y half life of (210)Pb is used as an advantage. (210)Pb is often considered to be relatively immobile in glass after alpha recoil implanted by (222)Rn progenies. The diffusion of (210)Pb could, however, lead to uncertain wrong retrospective radon exposure estimations if (210)Pb is mobile and can escape from glass, or lost as a result of cleaning-induced surface modification. This diffusion was studied by a radiotracer technique, where (209)Pb was used as a tracer in a glass matrix for which the elemental composition is known. Using the ion guide isotope separator on-line technique, the (209)Pb atoms were implanted into the glass with an energy of …

Time FactorsMaterials scienceAnnealing (metallurgy)DetergentsEnthalpyAnalytical chemistrychemistry.chemical_elementRadonIonDiffusionNuclear physicssymbols.namesakeRecoilRadiology Nuclear Medicine and imagingLead RadioisotopesRadiometryArrhenius equationModels StatisticalRadiationRadiological and Ultrasound TechnologyIsotopeTemperaturePublic Health Environmental and Occupational HealthLead RadioisotopesGeneral MedicineCyclotronschemistryRadonsymbolsGlassRadiation Protection Dosimetry
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Ensemble reconstruction constraints on the global carbon cycle sensitivity to climate

2010

The processes controlling the carbon flux and carbon storage of the atmosphere, ocean and terrestrial biosphere are temperature sensitive and are likely to provide a positive feedback leading to amplified anthropogenic warming. Owing to this feedback, at timescales ranging from interannual to the 20-100-kyr cycles of Earth's orbital variations, warming of the climate system causes a net release of CO(2) into the atmosphere; this in turn amplifies warming. But the magnitude of the climate sensitivity of the global carbon cycle (termed gamma), and thus of its positive feedback strength, is under debate, giving rise to large uncertainties in global warming projections. Here we quantify the med…

Time FactorsMultidisciplinary010504 meteorology & atmospheric sciencesMeteorologyClimate ChangeIceGlobal warmingTemperatureClimate changeGlobal changeCarbon DioxideModels Theoretical010502 geochemistry & geophysicsAtmospheric temperatureAtmospheric sciences01 natural sciencesCarbonCarbon cycle13. Climate actionGreenhouse gasClimate sensitivityEnvironmental scienceClimate model0105 earth and related environmental sciencesNature
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De novo formation of cytokeratin filament networks originates from the cell cortex in A-431 cells

2001

Of the three major cytoskeletal filament systems, the intermediate filaments are the least understood. Since they differ fundamentally from the actin- and microtubulebased networks by their lack of polarity, it has remained a mystery how and where these principally endless filaments are formed. Using a recently established epithelial cell system in which fluorescently labeled intermediate filaments of the cytokeratin type can be monitored in living cells, we address these issues. By multidimensional time-lapse fluorescence microscopy, we examine de novo intermediate filament network formation from non-filamentous material at the end of mitosis and show that it mirrors disassembly. It is dem…

Time FactorsNeurofilamentGreen Fluorescent ProteinsMitosisArp2/3 complexmacromolecular substancesModels BiologicalCell LineProtein filamentStructural BiologyCell cortexTumor Cells CulturedHumansPhosphorylationCytoskeletonIntermediate filamentMicroscopy VideoDose-Response Relationship DrugbiologyCell BiologyCell biologyLuminescent ProteinsTreadmillingMicroscopy Fluorescencebiology.proteinKeratinsCell DivisionCytokinesisProtein BindingCell Motility and the Cytoskeleton
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Use of semipermeable membrane devices for monitoring pesticides in indoor air.

2009

Abstract In this work, 40 pesticides from different categories were analyzed in the air of 20 indoor places that have an intensive use of pesticides. Passive sampling was carried out by using semipermeable membrane devices (SPMDs) deployed for 7 days. SPMDs were analyzed using microwave-assisted extraction and GC/MS. PCB-195 was used as an internal standard. Recoveries ranged between 81 and 108 for many compounds, with RSD values <11. Typical LOD values for 7 days of sampling were from 0.1 to 3.1 ng/m. Propamocarb, propoxur, carbosulfan, pirimicarb, metribuzin, metalaxyl, pendimethalin, oxadiazon, phenothrin, and permethrin were detected in 11 sampling sites, with air concentrations …

Time FactorsPirimicarbChemistry Techniques AnalyticalGas Chromatography-Mass SpectrometryPermeabilityAnalytical Chemistrychemistry.chemical_compoundmedicineEnvironmental ChemistryPesticidesPharmacologyAir PollutantsPesticide residueReproducibility of ResultsMembranes ArtificialEquipment DesignPesticidePropoxurModels TheoreticalchemistryEnvironmental chemistryAir Pollution IndoorCalibrationPropamocarbCarbosulfanPhenothrinAgronomy and Crop ScienceFood SciencePermethrinmedicine.drugEnvironmental MonitoringJournal of AOAC International
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Spatial and temporal structure of the trematode component community inValvata macrostoma(Gastropoda, Prosobranchia)

2008

SUMMARYWe conducted the first comprehensive study on the spatiotemporal structure of trematode communities in the large-mouthed valve snail,Valvata macrostoma. A total of 1103 snails were examined monthly between May and October 2007 from Lake Konnevesi, Central Finland, from a shallow (1–2 m deep) and an offshore site (5–6 m deep), located ca. 50–70 m apart. Snails were infected by 10 trematode species. The species composition and prevalence were strikingly different between the sites with high species diversity in the shallow site (all 10 species; total prevalence of sporocysts/rediae 12·1%, metacercariae 55·4%) compared to the deeper site (3 species; prevalence 15·0% and 1·9%, respective…

Time FactorsPopulation DynamicsSnailsPopulationSnailbiology.animalGastropodaAnimalsBody SizeeducationFinlandeducation.field_of_studybiologyCommunityEcologyProsobranchiaOocystsValvata macrostomaSpecies diversitybiology.organism_classificationLogistic ModelsInfectious DiseasesAnimal Science and ZoologyParasitologyTrematodaTrematodaParasitology
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Equilibrium coverage fluctuations: a new approach to quantify reversible adsorption of proteins.

2005

Time FactorsProtein ConformationKineticsBiophysicsBiosensing TechniquesModels BiologicalAdsorptionAb initio quantum chemistry methodsComputational chemistryElectrochemistryComputer SimulationPhysical and Theoretical ChemistryChemistryReversible adsorptionChemistry PhysicalProteinsSurface Plasmon ResonanceAtomic and Molecular Physics and OpticsNanostructuresKineticsSpectrophotometryAdsorptionStress MechanicalPeptidesMonte Carlo MethodAlgorithmsProtein BindingChemphyschem : a European journal of chemical physics and physical chemistry
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