Search results for "Modifications"

showing 10 items of 64 documents

Editorial: Zebrafish Epigenetics.

2022

A key area of focus in the field of epigenetics pertains the comprehension of the functional relevance of the epigenetic mechanisms occurring during embryogenesis to shape normal developmental trajectories and adult phenotypes (Atlasi and Stunnenberg, 2017; Skvortsova et al., 2018; Cavalieri, 2021; Marchione et al., 2021). Several lines of evidence highlighted that the small freshwater cyprinid Danio rerio, commonly known as zebrafish, is an excellent vertebrate model for research purposes in the field of epigenetics (Huang et al., 2013; Balasubramanian et al., 2019; Horsfield, 2019; Cavalieri, 2020). The general strengths of zebrafish over concurrent models are well known: ease of husbandr…

DNA methylationepigeneticshistone post translational modificationschromatin dynamicsSettore BIO/11 - Biologia MolecolareCell BiologyzebrafishDevelopmental BiologyFrontiers in cell and developmental biology
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RNA mediated toll-like receptor stimulation in health and disease

2012

Besides their well known functions in storage and translation of information nucleic acids have emerged as a target of pattern recognition receptors that drive activation of innate immunity. Due to the paucity of building block monomers used in nucleic acids, discrimination of host and microbial nucleic acids as a means of self/foreign discrimination is a complicated task. Pattern recognition receptors rely on discrimination by sequence, structural features and spatial compartmentalization to differentiate microbial derived nucleic acids from host ones. Microbial nucleic acid detection is important for the sensing of infectious danger and initiating an immune response to microbial attack. F…

DNA BacterialReviewComputational biologyBiologyAutoimmune DiseasesImmune systemAnimalsHumansinfectionsRNA Small Interferinginnate immunityMolecular BiologyToll-like receptorInnate immune systemBacteriaBase SequenceToll-Like ReceptorsautoimmunityPattern recognition receptormodificationsRNATranslation (biology)Bacterial InfectionsCell BiologyCompartmentalization (psychology)Immunity InnateNucleic acidsRNA BacterialImmunologyNucleic acidNucleic Acid Conformationtoll-like receptorProtein BindingRNA Biology
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Long-term analysis (1863–2002) of environmental change in the Capo Feto area (Mediterranean sea)

2004

The area of Capo Feto represents one of the few remaining salt-marshy zones in Sicily. It lies within a site of importance for the Community (defined as a “sito di importanza comunitaria” (SIC)), which also includes Margi Spanò and Margi Milo. The Capo Feto and Margi Spanò marshlands have also been identified by the Ministry for the Environment as an area deserving special protection (“zona a protezione speciale” (ZPS)). Moreover, in 1999, 150 ha of the Capo Feto area were included in a project for environmental rehabilitation as part of the European Union “Life-Nature 2000” programme (Comitato Tecnico-Scientifico Area di Capo Feto, 1997). Prior to this, the area had become somewhat degrade…

EcologyEnvironmental changeCapo Feto Marshy area Natural biotope ModificationsNatural (archaeology)FisheryEnvironmental rehabilitationGeographyMediterranean seaGeneral Earth and Planetary Sciencesmedia_common.cataloged_instanceChristian ministryEuropean unionEcology Evolution Behavior and SystematicsGeneral Environmental Sciencemedia_commonChemistry and Ecology
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Constitutive Promoter Occupancy by the MBF-1 Activator and Chromatin Modification of the Developmental Regulated Sea Urchin α-H2A Histone Gene

2007

The tandemly repeated sea urchin alpha-histone genes are developmentally regulated. These genes are transcribed up to the early blastula stage and permanently silenced as the embryos approach gastrulation. As previously described, expression of the alpha-H2A gene depends on the binding of the MBF-1 activator to the 5' enhancer, while down-regulation relies on the functional interaction between the 3' sns 5 insulator and the GA repeats located upstream of the enhancer. As persistent MBF-1 binding and enhancer activity are detected in gastrula embryos, we have studied the molecular mechanisms that prevent the bound MBF-1 from trans-activating the H2A promoter at this stage of development. Her…

Embryo Nonmammaliananimal structuresRestriction MappingMBF-1Down-RegulationEnhancer RNAschromatin immunoprecipitationBiologyHistone DeacetylasesactivatorHistonesHistone H3Histone H1Structural BiologyHistone H2AHistone methylationAnimalsNucleosomeHistone codenucleosome phasingPromoter Regions GeneticEnhancerBase PairingMolecular Biologyhistone modificationsGene Expression Regulation DevelopmentalGastrulaMolecular biologyChromatinNucleosomesRepressor ProteinsMutagenesis InsertionalEnhancer Elements GeneticSea Urchinsembryonic structuresTrans-ActivatorsCalmodulin-Binding ProteinsInsulator Elementssea urchin histone geneProtein Processing Post-TranslationalProtein BindingJournal of Molecular Biology
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Histone-mediated transgenerational epigenetics

2019

Abstract Epigenetic mechanisms operate at the interface between the environment and genome, by converting the environmental stimuli to phenotypic responses through changes in the chromatin landscape, which ultimately affects gene expression in the absence of alterations in DNA sequence. In this scenario, transgenerational inheritance occurs when epigenetic variations induced by environmental stimuli are transmitted through the germ line to succeeding generations that had never experienced those stimuli. There is an ever-growing list of reports indicating that histones are fundamental players in these processes in a variety of organisms. In this chapter, we provide a perspective on histone-d…

GeneticsHistonebiology.proteinInheritance (genetic algorithm)NucleosomeSettore BIO/11 - Biologia MolecolareEpigeneticsHistone-based epigenetic inheritanceHistone inheritance in diseaseHistone posttranslational modificationsHistone variantsNucleosome positioningPerpetuation of maternal histonesRetention of paternal nucleosomeTransgenerational transmission of environmental informationBiologyGenomePhenotypeGermlineChromatin
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Genetic and Cytological Analysis of Drosophila Chromatin-Remodeling Factors

2003

GeneticsSettore BIO/18 - GeneticabiologyRNA-POLYMERASE-IIDrosophila melanogasterDrosophila (subgenus)biology.organism_classificationDrosophila ProteinChromatin remodelingCell biologyHISTONE MODIFICATIONS
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Translational adaptation to heat stress is mediated by RNA 5‐methylcytosine in Caenorhabditis elegans

2021

Abstract Methylation of carbon‐5 of cytosines (m5C) is a post‐transcriptional nucleotide modification of RNA found in all kingdoms of life. While individual m5C‐methyltransferases have been studied, the impact of the global cytosine‐5 methylome on development, homeostasis and stress remains unknown. Here, using Caenorhabditis elegans, we generated the first organism devoid of m5C in RNA, demonstrating that this modification is non‐essential. Using this genetic tool, we determine the localisation and enzymatic specificity of m5C sites in the RNome in vivo. We find that NSUN‐4 acts as a dual rRNA and tRNA methyltransferase in C. elegans mitochondria. In agreement with leucine and proline bein…

Hot TemperatureProlineRibosomeGeneral Biochemistry Genetics and Molecular BiologyArticle03 medical and health sciencesNSUNCytosine0302 clinical medicineRNA modificationsLeucinem5CAnimalsRNA Processing Post-TranscriptionalCaenorhabditis elegansMolecular BiologytRNACaenorhabditis elegansprotein translation030304 developmental biologyGene Editing0303 health sciencesGeneral Immunology and MicrobiologybiologyGeneral NeuroscienceTRNA MethyltransferaseRNATranslation (biology)MethylationArticlesMethyltransferasesRibosomal RNAbiology.organism_classificationRNA BiologyAdaptation Physiological5‐methylcytosineCell biologyMitochondriatranslation efficiencyProtein BiosynthesisTransfer RNA5-MethylcytosineRNACRISPR-Cas SystemsRibosomes030217 neurology & neurosurgeryHeat-Shock ResponseThe EMBO Journal
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Oral Hygiene and Dietary Habits in Adolescents with Fixed Orthodontic Appliances: A Cross-sectional Study.

2016

ABSTRACT Objectives Fixed orthodontic appliances (FOAs) may cause a temporary deterioration of oral hygiene with corresponding gingival inflammatory changes. Optimal oral hygiene and dietary changes are essential in order to avoid periodontal inflammation. The present study investigates to what extent the recommendations made by the orthodontist are followed by young patients. Materials and methods A total of 67 adolescent patients with FOA were examined and interviewed. The control group consisted of 70 patients of the same age who had not undergone any orthodontic treatment. A specific questionnaire (assessing dietary habits, oral hygiene measures) was used and comprehensive oral findings…

MaleAdolescentCross-sectional studyAdolescent HealthDentistryDental plaqueOral hygiene03 medical and health sciences0302 clinical medicineOrthodontic AppliancesSurveys and QuestionnairesMedicineHumans030212 general & internal medicineGingival inflammationChildGeneral Dentistrybusiness.industryOral hygiene status030206 dentistryFeeding Behaviormedicine.diseaseDietary adviceOral HygieneCross-Sectional StudiesFemalebusinessDietary modificationsAdolescent healthThe journal of contemporary dental practice
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SARS CoV2 infection _The longevity study perspectives

2021

Graphical abstract

MaleAgingssRNA single-stranded RNARFLP restriction fragment length polymorphismHSPs heat shock proteinsReviewPTMs post-translational modificationsSevere Acute Respiratory SyndromeBiochemistryHIV-1 human immunodeficiency virus-1TNF-α tumor necrosis factor-αEC endothelial cells0302 clinical medicineFluAV influenza A virusI insertionMedicineIFN-γ interferon-γDIC disseminated intravascular coagulationPCR Polymerase Chain Reactionmedia_commonAged 80 and overLongevityRBD receptor-binding domainNeurologyLongevity modelMI myocardial infarctionNK natural killerhPIV2 human parainfluenza virus type 2media_common.quotation_subjectResearching genetic basis of resistance and potential pharmacological targetsLongevityDBP diastolic blood pressureNF-Kb nuclear transcription factor kBRANTES regulated upon activation normal T cell expressed and secretedMphi human macrophages03 medical and health sciencesCox 2 cyclooxygenase 2ORF open reading framePT prothrombin timeSettore MED/05 - Patologia ClinicaHumansMolecular BiologyInflammatory genesARDS acute respiratory distress syndromeNO nitric oxideD deletionCpGIs CpG islandsT2DM type 2 diabetes mellitusmedicine.diseaseFDP fibrin degradation products030104 developmental biologySARS CoV2 severe acute respiratory syndrome Coronavirus 2 virusImmunologyBMI body max indexItalian nonagenarians/centenariansRSV respiratory syncytial virusComplication030217 neurology & neurosurgeryMAPK mitogen-activated protein kinaseIP-10 IFN-γ -Inducible Protein 1040301 basic medicineAT1R activity of angiotensin 1 receptorsDCs dentritic cellsSSCP single strand conformation polymorphismACE/DD polymorphism of the angiotensin converting enzymeFGF21 fibroblast growth factor 21TLR4 toll-like receptor 4NAD nicotinamide adenine dinucleotideACE angiotensin-I converting enzymeAT2R activity of angiotensin 2 receptorsCOVID-19 Coronavirus disease 2019Respiratory distressACE2 angiotensin converting enzyme 2MKP-1 mitogen-activated protein kinase phosphatase-1 ()PD protease domainSNP single nucleotide polymorphismEH essential hypertensionTNFR tumor necrosis factor receptorINR international normalized ratio of the prothrombin timePAI-1 plasminogen activator inhibitor-1Ang angiotensinLPS lipopolysaccharideMCP1 monocyte chemoattractant protein-1medicine.symptomaPTT partial thromboplastin timeBiotechnologyDUSP1 dual specificity phosphatase 1Coronavirus disease 2019 (COVID-19)PC prostate cancerRAS renin-angiotensin aldosterone systemCCR5Δ32 genetic variant of chemokine receptorCOVID-19 Researching genetic basis of resistance and potential pharmacological targets Italian nonagenarians/centenarians Longevity modelAsymptomaticSARS-1 severe acute respiratory syndrome virus 1SIRT-1 Sirtuin 1Th1 t-helper lymphocyte type 1Immune systemROS reactive oxygen speciesTGF-β transforming growth factor betaET-1 endothelin-1ComputingMethodologies_COMPUTERGRAPHICSADAM-17 metallopeptidase domain 17business.industrySARS-CoV-2SBP systolic blood pressureCOVID-19HDACs histone deacetylasesComorbidityImmune Systembusiness5-LO lipoxygenase 5Ageing Research Reviews
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Changes in histone acetylation in the prefrontal cortex of ethanol-exposed adolescent rats are associated with ethanol-induced place conditioning

2012

Alcohol drinking during adolescence can induce long-lasting effects on the motivation to consume alcohol. Abnormal plasticity in reward-related processes might contribute to the vulnerability of adolescents to drug addiction. We have shown that binge-like ethanol treatment in adolescent rats induces alterations in the dopaminergic system and causes histone modifications in brain reward regions. Considering that histone acetylation regulates transcriptional activity and contributes to drug-induced alterations in gene expression and behavior, we addressed the hypothesis that ethanol is capable of inducing transcriptional changes by histone modifications in specific gene promoters in adolescen…

Malemedicine.medical_specialtyPrefrontal CortexHDAC inhibitionChromatin remodelingHistonesCellular and Molecular Neurosciencechemistry.chemical_compoundInternal medicineConditioning PsychologicalmedicineAnimalsEpigeneticsRats WistarConditioned place aversionPharmacologyEthanolbiologyHistone modificationsAge FactorsAcetylationSodium butyrateRatsAdolescenceHistone Deacetylase InhibitorsHistoneEndocrinologychemistryBiochemistryAcetylationbiology.proteinBrain stimulation rewardBinge-like ethanol treatmentHistone deacetylaseFOSBNeuropharmacology
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