Search results for "Monophyly"
showing 10 items of 133 documents
Phylogenetic generic classification of parmelioid lichens (Parmeliaceae, Ascomycota) based on molecular, morphological and chemical evidence
2010
WOS: 000285566000008
Phylogenomics reveals deep molluscan relationships.
2011
Evolutionary relationships among the eight major lineages of Mollusca have remained unresolved despite their diversity and importance. Previous investigations of molluscan phylogeny, based primarily on nuclear ribosomal gene sequences1–3 or morphological data4, have been unsuccessful at elucidating these relationships. Recently, phylogenomic studies using dozens to hundreds of genes have greatly improved our understanding of deep animal relationships5. However, limited genomic resources spanning molluscan diversity has prevented use of a phylogenomic approach. Here we use transcriptome and genome data from all major lineages (except Monoplacophora) and recover a well-supported topology for …
EST sequencing of Onychophora and phylogenomic analysis of Metazoa
2007
Onychophora (velvet worms) represent a small animal taxon considered to be related to Euarthropoda. We have obtained 1873 5' cDNA sequences (expressed sequence tags, ESTs) from the velvet worm Epiperipatus sp., which were assembled into 833 contigs. BLAST similarity searches revealed that 51.9% of the contigs had matches in the protein databases with expectation values lower than 10(-4). Most ESTs had the best hit with proteins from either Chordata or Arthropoda (approximately 40% respectively). The ESTs included sequences of 27 ribosomal proteins. The orthologous sequences from 28 other species of a broad range of phyla were obtained from the databases, including other EST projects. A conc…
Fauna Europaea: Diptera – Brachycera
2015
Fauna Europaea provides a public web-service with an index of scientific names (including important synonyms) of all extant multicellular European terrestrial and freshwater animals and their geographical distribution at the level of countries and major islands (east of the Urals and excluding the Caucasus region). The Fauna Europaea project comprises about 230,000 taxonomic names, including 130,000 accepted species and 14,000 accepted subspecies, which is much more than the originally projected number of 100,000 species. Fauna Europaea represents a huge effort by more than 400 contributing taxonomic specialists throughout Europe and is a unique (standard) reference suitable for many user c…
Rehabilitation of Barbus lorteti Sauvage, 1882, and comments on the validity of the generic names Bertinius Fang, 1943, and Bertinichthys Whitley, 19…
1985
The validity of Barbus lorteti Sauvage, 1882, a cyprinid fish endemic to the lower course of the Orontes river in Syria and Turkey which Karaman synonymized with Barbus longiceps, is reaffirmed. A lectotype is designated and a redescription is given. The most outstanding morphological feature of Barbus lorteti — a pharyngeal formula of 2.3.4–4.3.2, the first tooth of the inner row being enlarged and molariform, which is shared by Barbus subquincunciatus from the Tigris-Euphrates basin and Barbus longiceps from the Jordan river basin — is regarded as an adaptation to a molluscan diet. Its occurrence in the three species in question is due to convergence and does not indicate a monophyletic o…
Molecular data supports the inclusion of <i>Ildobates neboti</i> Español in Zuphiini (Coleoptera: Carabidae: Harpalinae)
2006
The phylogenetic relationships of Ildobates neboti Español (Coleoptera: Carabidae: Harpalinae) were investigated based on three nuclear genes (full 18S rRNA, and a fragment of each 28S rRNAand wingless).We compiled a data set using published sequences of 32 members of Harpalinae including one example each of Dryptini (genus Desera), Galeritini (Galerita) and Zuphiini (Thalpius), plus three Brachininae as outgroups. These three tribes form the “Dryptitae”, within which various relationships of Ildobates had been proposed. The analyses of the datamatrix using parsimony (with equally weighted and reweighted characters) and Bayesian posterior probabilities all support the monophyly of the three…
Molecular phylogeny of parabasalids with emphasis on the order Cristamonadida and its complex morphological evolution
2009
1055-7903 doi: DOI: 10.1016/j.ympev.2009.03.011; Parabasalia represents a complex assemblage of species, which recently received extensive reorganization. The newly created order Cristamonadida unites complex hypermastigids belonging to the Lophomonadida like the joeniids, the multinucleate polymonad Calonymphidae, and well-developed trichomonads in the Devescovinidae. All these protists exclusively occur in the guts of termites and related insects. In this study, small subunit rRNA and glyceraldehyde-3-phosphate dehydrogenase genes were identified without cultivation from 14 species in Cristamonadida including previously unstudied genera such as Joenina, Joenia, Joenoides, Macrotrichomonas…
Phylogenetics of Anthyllis (Leguminosae: Papilionoideae: Loteae): Partial incongruence between nuclear and plastid markers, a long branch problem and…
2010
Abstract Phylogenetic relationships in the genus Anthyllis (Leguminosae: Papilionoideae: Loteae) were investigated using data from the nuclear ribosomal internal transcribed spacer regions (ITS) and three plastid regions (psbA–trnH intergenic spacer, petB–petD region and rps16 intron). Bayesian and maximum parsimony (MP) analysis of a concatenated plastid dataset recovered well-resolved trees that are topologically similar, with many clades supported by unique indels. MP and Bayesian analyses of the ITS sequence data recovered trees that have several well-supported topological differences, both among analyses, and to trees inferred from the plastid data. The most substantial of these concer…
Phylogeography of the Eurasian Willow Tit (Parus montanus) based on DNA sequences of the mitochondrial cytochrome b gene.
2002
The phylogeographic relationships of the trans-Palearctic Willow Tit assemblage were studied by obtaining sequence data from the mitochondrial cytochrome b gene from 34 specimens representing nine subspecies from across the species range. Four distinct genetic groups were identified: Parus montanus weigoldicus, P. m. affinis, P. m. songarus, and a clade containing six Eurasian subspecies (ssp. baicalensis, borealis, montanus, restrictus, rhenanus, and sachalinensis). P. m. weigoldicus, P. m. affinis, and P. m. songarus were reciprocally monophyletic and separated from each other and other subspecies by uncorrected genetic distances between 1.9 and 5.8%. The remaining six subspecies were clo…
Phylogeny of the genus Kluyveromyces inferred from the mitochondrial cytochrome-c oxidase II gene.
2000
A phylogenetic analysis of 17 species belonging to the genus Kluyveromyces and 12 reference and outgroup species was performed using mitochondrial cytochrome-c oxidase II gene sequences. The genus Kluyveromyces appears as a polyphyletic taxon formed by species included within the following four main groups. The Kluyveromyces phaffii group encompasses the species Kluyveromyces blattae, K. phaffii and Kluyveromyces yarrowii. The Kluyveromyces marxianus group is a monophyletic group consisting of the species Kluyveromyces aestuarii, Kluyveromyces dobzhanskii, Kluyveromyces lactis, K. marxianus and Kluyveromyces wickerhamii. The monophyletic Kluyveromyces thermotolerans group is formed by K. th…