Search results for "Mosaic-virus"

showing 4 items of 4 documents

Phosphoglycerate Kinases Are Co-Regulated to Adjust Metabolism and to Optimize Growth

2017

[EN] In plants, phosphoglycerate kinase (PGK) converts 1,3-bisphosphoglycerate into 3-phosphoglycerate in glycolysis but also participates in the reverse reaction in gluconeogenesis and the Calvin-Benson cycle. In the databases, we found three genes that encode putative PGKs. Arabidopsis (Arabidopsis thaliana) PGK1 was localized exclusively in the chloroplasts of photosynthetic tissues, while PGK2 was expressed in the chloroplast/plastid of photosynthetic and nonphotosynthetic cells. PGK3 was expressed ubiquitously in the cytosol of all studied cell types. Measurements of carbohydrate content and photosynthetic activities in PGK mutants and silenced lines corroborated that PGK1 was the phot…

0106 biological sciences0301 basic medicinePhysiologyResearch Articles - Focus IssueMutantArabidopsisPlant ScienceGlyceric AcidsPlant Roots01 natural sciencesChloroplastGene03 medical and health sciencesCytosolGene Expression Regulation PlantArabidopsisGeneticsBIOQUIMICA Y BIOLOGIA MOLECULARMetabolomicsArabidopsis thalianaBamboo-Mosaic-VirusPlastidPhosphoglycerate kinaseGas-ChromatographybiologyArabidopsis ProteinsWild typefood and beveragesMetabolismArabidopsis-ThalianaPlant Components AerialPlants Genetically Modifiedbiology.organism_classificationHelianthus-Annuus L.3-Phosphoglycerate kinaseChloroplastPhosphoglycerate Kinase030104 developmental biologyBiochemistryMultigene FamilyMutationNicotiana-BenthamianaFISIOLOGIA VEGETALPlastics010606 plant biology & botanyPhosphorylating glyceraldehyde-3-phosphate dehydrogenaseGastric-Cancer
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Phylogeography and Molecular Evolution of Potato virus Y

2012

Potato virus Y (PVY) is an important plant pathogen, whose host range includes economically important crops such as potato, tobacco, tomato, and pepper. PVY presents three main strains (PVYO, PVYN and PVYC) and several recombinant forms. PVY has a worldwide distribution, yet the mechanisms that promote and maintain its population structure and genetic diversity are still unclear. In this study, we used a pool of 77 complete PVY genomes from isolates collected worldwide. After removing the effect of recombination in our data set, we used Bayesian techniques to study the influence of geography and host species in both PVY population structure and dynamics. We have also performed selection and…

0106 biological sciencesEvolutionary GeneticsAmino-acid sitesSelective constraintsPotyviruslcsh:Medicine01 natural sciencesAmino-Acid SitesRecombinant strainPlant RNA virusesNegative selectionMaximum-Likelihoodlcsh:Sciencepathologie végétaleSelective ConstraintsPhylogenyGenetics0303 health sciencesCoat proteinMultidisciplinaryNatural selectionVegetal BiologybiologyEcologyGenetic-structurePotyvirusfood and beveragesEuropePhylogeneticsVenous necrosisPhylogeographyPotato virus YBiogeographyVenous NecrosisSequence AnalysisResearch ArticlePlant RNA VirusesGenome ViralMicrobiologyEvolution Molecular03 medical and health sciencesGenetic-StructureMolecular evolutionVirologyMosaic-virus[SDV.BV]Life Sciences [q-bio]/Vegetal BiologyEvolutionary SystematicsBiology030304 developmental biologySolanum tuberosumGenetic diversityEvolutionary BiologyMosaic virusHost (biology)Maximum-likelihoodlcsh:RComputational Biologyvirus à de la pomme de terreBayes Theoremlégumebiology.organism_classificationMutational analysisMosaic-VirusMutational AnalysisEvolutionary EcologyRecombinant StrainNorth Americalcsh:QBiologie végétalePopulation Genetics010606 plant biology & botany
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Experimental virus evolution reveals a role of plant microtubule dynamics and TORTIFOLIA1/SPIRAL2 in RNA trafficking.

2014

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ArabidopsisPlant ScienceMicrotubulesRNA Transport//purl.org/becyt/ford/1 [https]INFECTIONTobacco mosaic virusTOBACCO-MOSAIC-VIRUSMovement proteinCytoskeletonCytoskeletonGeneticsCoat proteinMultidisciplinaryTRANSGENIC PLANTSQREXPERIMENTAL EVOLUTIONARABIDOPSISBiological Evolution3. Good healthCell biologyMacromolecular assemblyTobacco Mosaic VirusMICROTUBULESMedical MicrobiologyTobamovirusesViral Pathogensdynamic plasticityHost-Pathogen InteractionsMedicineTobacco mosaic viruscortical microtubuleCellular Structures and OrganellesCortical microtubuleARABIDOPSIS CORTICAL MICROTUBULESCell wallsMicrotubule-Associated ProteinsCIENCIAS NATURALES Y EXACTASResearch ArticleEvolutionary ProcessesSciencePlant Cell BiologyPlant PathogensORGANIZATIONBiologyMicrobiologyPlant Viral PathogensCiencias BiológicasMOVEMENT PROTEINComplexesMicrotubuleEvolutionary Adaptation//purl.org/becyt/ford/1.6 [https]Microbial PathogensPlant DiseasesEvolutionary BiologyArabidopsis ProteinsBotánicaRNABiology and Life SciencesCell BiologyPlant PathologyTMVCytoplasmMutationRNAVirologíaHELICAL GROWTHPloS one
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Emergence and Phylodynamics of Citrus tristeza virus in Sicily, Italy

2013

Citrus tristeza virus (CTV) outbreaks were detected in Sicily island, Italy for the first time in 2002. To gain insight into the evolutionary forces driving the emergence and phylogeography of these CTV populations, we determined and analyzed the nucleotide sequences of the p20 gene from 108 CTV isolates collected from 2002 to 2009. Bayesian phylogenetic analysis revealed that mild and severe CTV isolates belonging to five different clades (lineages) were introduced in Sicily in 2002. Phylogeographic analysis showed that four lineages co-circulated in the main citrus growing area located in Eastern Sicily. However, only one lineage (composed of mild isolates) spread to distant areas of Sici…

Nonsynonymous substitutionCitrusGenetic-variationLineage (evolution)Population Dynamicslcsh:MedicinePopulation geneticsPlant Sciencelcsh:SciencePhylogenetic analysesPhylogenyGeneticsMultidisciplinarybiologyPhylogenetic treeGeographyCitrus tristeza virusAgriculturePhylogeneticsItalyRNA ViralEvolutionary dynamicsCross-protectionSequence AnalysisResearch ArticleClosterovirusDNA ComplementaryMolecular Sequence DataPlant PathogensCropsMicrobiologyViral EvolutionFruitsGenetic driftSpecies SpecificityVirologyMosaic-virusGenetic variationCTV Phylodynamics SicilyEvolutionary SystematicsPopulation-structureHost passageBiologyPlant DiseasesEvolutionary BiologyMaximum-likelihoodlcsh:RSettore AGR/12 - Patologia VegetaleComputational BiologyGenetic VariationBayes TheoremSequence Analysis DNAPlant Pathologybiology.organism_classificationAgronomyViral phylodynamicsDNA polymorphismEvolutionary biologyMolecular evolutionlcsh:Q
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