Search results for "Multidisciplinary"

showing 10 items of 4640 documents

Survival and gene expression under different temperature and humidity regimes in ants

2017

Short term variation in environmental conditions requires individuals to adapt via changes in behavior and/or physiology. In particular variation in temperature and humidity are common, and the physiological adaptation to changes in temperature and humidity often involves alterations in gene expression, in particular that of heat-shock proteins. However, not only traits involved in the resistance to environmental stresses, but also other traits, such as immune defenses, may be influenced indirectly by changes in temperature and humidity. Here we investigated the response of the ant F. exsecta to two temperature regimes (20 degrees C & 25 degrees C), and two humidity regimes (50% & 75%), for…

0106 biological sciences0301 basic medicineAtmospheric ScienceympäristöAcclimatizationGene Expressionlcsh:MedicinemuutosALFALFA LEAFCUTTING BEEBiochemistryImmune Receptors01 natural sciencesEndocrinologyACCLIMATIONmuurahaisetGene expressionMedicine and Health SciencesIMMUNE-RESPONSEInsulinTRANSCRIPTIONgeeniekspressiolcsh:SciencePOPULATIONHeat-Shock ProteinsProtein MetabolismsopeutuminenPrincipal Component Analysiseducation.field_of_studyImmune System ProteinsMultidisciplinaryBehavior AnimalEcologyolosuhteetTemperaturefood and beveragesANThumanitiesInsectsimmuunijärjestelmä1181 Ecology evolutionary biologyPhysical SciencesMEGACHILE-ROTUNDATAlämpötilaympäristönmuutoksetResearch ArticleNutrient and Storage ProteinsSignal TransductionArthropodaImmunologyPopulationZoologyBiology010603 evolutionary biologyAcclimatization03 medical and health sciencesMeteorologyTwo temperatureStress PhysiologicalGeneticsAnimalseducationGeneProportional Hazards ModelsDiabetic EndocrinologyAntsBEAUVERIA-BASSIANAGene Expression Profilinglcsh:ROrganismshumidityBiology and Life SciencesProteinsHumiditytemperatureHumidityEigenvaluesCell BiologyDESICCATIONInvertebratesHymenopteraHormonesMetabolismAlgebra030104 developmental biologyGene Expression RegulationLinear AlgebraDROSOPHILA-MELANOGASTERkosteusEarth Sciencesgene expressionta1181lcsh:QFormica exsectaDesiccationRESISTANCEMathematics
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Specific binding of Bacillus thuringiensis Cry1Ea toxin, and Cry1Ac and Cry1Fa competition analyses in Anticarsia gemmatalis and Chrysodeixis include…

2019

AbstractAnticarsia gemmatalis (velvetbean caterpillar) and Chrysodeixis includens (soybean looper) are two important defoliation pests of soybeans. In the present study, we have investigated the susceptibility and brush border membrane-binding properties of both species to Bacillus thuringiensis Cry1Ea toxin. Bioassays performed in first-instar larvae demonstrated potent activity against both soybean pests in terms of mortality or practical mortality. Competition-binding studies carried out with 125Iodine-labelled Cry1Ea, demonstrated the presence of specific binding sites on the midgut brush border membrane vesicles (BBMV) of both insect species. Heterologous competition-binding experiment…

0106 biological sciences0301 basic medicineBrush borderlcsh:MedicineMoths01 natural sciencesArticleMicrobiologyApplied microbiology03 medical and health sciencesHemolysin ProteinsBacterial ProteinsChrysodeixis includensBacillus thuringiensisEnvironmental biotechnologyAnimalsCaterpillarlcsh:ScienceMultidisciplinaryBinding SitesbiologyBacillus thuringiensis ToxinsMicrovillifungilcsh:Rfood and beveragesMidgutbiology.organism_classificationEndotoxins010602 entomologyAnticarsia gemmatalis030104 developmental biologyCry1AcBiological Control AgentsLarvaBiological Assaylcsh:QPEST analysisSoybeansScientific Reports
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Synthetic conversion of leaf chloroplasts into carotenoid-rich plastids reveals mechanistic basis of natural chromoplast development

2020

Plastids, the defining organelles of plant cells, undergo physiological and morphological changes to fulfill distinct biological functions. In particular, the differentiation of chloroplasts into chromoplasts results in an enhanced storage capacity for carotenoids with industrial and nutritional value such as beta-carotene (provitamin A). Here, we show that synthetically inducing a burst in the production of phytoene, the first committed intermediate of the carotenoid pathway, elicits an artificial chloroplast-to-chromoplast differentiation in leaves. Phytoene overproduction initially interferes with photosynthesis, acting as a metabolic threshold switch mechanism that weakens chloroplast i…

0106 biological sciences0301 basic medicineChloroplastsNuclear gene[SDV]Life Sciences [q-bio]ArabidopsisProtein EngineeringPhotosynthesis01 natural sciences03 medical and health scienceschemistry.chemical_compoundPhytoeneTobaccoChromoplast[SDV.BV]Life Sciences [q-bio]/Vegetal BiologyPlastidsPlastidCarotenoidComputingMilieux_MISCELLANEOUSPlant Proteinschemistry.chemical_classificationCarotenoidPhytoeneMultidisciplinarySyntheticfood and beveragesCell DifferentiationChromoplastBiological Sciencesbeta CarotenePlant cellCarotenoidsCell biology02.- Poner fin al hambre conseguir la seguridad alimentaria y una mejor nutrición y promover la agricultura sosteniblePlant LeavesChloroplastGENETICA030104 developmental biologychemistryDifferentiationChromoplat010606 plant biology & botanyProceedings of the National Academy of Sciences
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Chloroplast genomes of Rubiaceae: Comparative genomics and molecular phylogeny in subfamily Ixoroideae.

2020

In Rubiaceae phylogenetics, the number of markers often proved a limitation with authors failing to provide well-supported trees at tribal and generic levels. A robust phylogeny is a prerequisite to study the evolutionary patterns of traits at different taxonomic levels. Advances in next-generation sequencing technologies have revolutionized biology by providing, at reduced cost, huge amounts of data for an increased number of species. Due to their highly conserved structure, generally recombination-free, and mostly uniparental inheritance, chloroplast DNA sequences have long been used as choice markers for plant phylogeny reconstruction. The main objectives of this study are: 1) to gain in…

0106 biological sciences0301 basic medicineChloroplastsPlant GenomesCoffeaRubiaceaePlant SciencePlant Genetics01 natural sciencesGenomePlant GenomicsPlastidsGenome EvolutionPhylogenyData ManagementMultidisciplinaryIxoroideaeQDNA ChloroplastRHigh-Throughput Nucleotide Sequencingfood and beveragesPhylogenetic AnalysisGenomicsPhylogeneticsChloroplast DNAEngineering and TechnologyMedicineGenome PlantResearch ArticleBiotechnologyGenome evolutionComputer and Information SciencesNuclear genePlant Cell BiologyScienceGenomicsBioengineeringBiology010603 evolutionary biologyPolymorphism Single NucleotideMolecular EvolutionEvolution Molecular03 medical and health sciencesChloroplast GenomeGeneticsEvolutionary SystematicsGenome ChloroplastTaxonomyComparative genomicsEvolutionary BiologyBiology and Life SciencesComputational BiologyCell BiologySequence Analysis DNAComparative Genomicsbiology.organism_classificationGenome AnalysisGenomic Libraries030104 developmental biologyEvolutionary biologyPlant BiotechnologyReference genomePLoS ONE
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Evaluation of chloroplast genome annotation tools and application to analysis of the evolution of coffee species.

2018

International audience; Chloroplast sequences are widely used for phylogenetic analysis due to their high degree of conservation in plants. Whole chloroplast genomes can now be readily obtained for plant species using new sequencing methods, giving invaluable data for plant evolution However new annotation methods are required for the efficient analysis of this data to deliver high quality phylogenetic analyses. In this study, the two main tools for chloroplast genome annotation were compared. More consistent detection and annotation of genes were produced with GeSeq when compared to the currently used Dogma. This suggests that the annotation of most of the previously annotated chloroplast …

0106 biological sciences0301 basic medicineChloroplastsPlant GenomesPlant SciencePlant Genetics01 natural sciencesGenomeCoffeeDatabase and Informatics MethodsPlant GenomicsPlastidsPhylogenyData Management2. Zero hungerPlant evolutionMultidisciplinarybiologyPhylogenetic treeQRfood and beveragesPhylogenetic AnalysisGenome projectGenomicsPhylogenetics[INFO.INFO-MA]Computer Science [cs]/Multiagent Systems [cs.MA]MedicineEngineering and Technology[INFO.INFO-DC]Computer Science [cs]/Distributed Parallel and Cluster Computing [cs.DC]Cellular Structures and OrganellesCellular TypesSequence AnalysisResearch ArticleBiotechnologyComputer and Information SciencesBioinformaticsSciencePlant Cell BiologyBioengineering[INFO.INFO-SE]Computer Science [cs]/Software Engineering [cs.SE]Coffea canephoraGenes PlantResearch and Analysis Methods010603 evolutionary biology[INFO.INFO-IU]Computer Science [cs]/Ubiquitous ComputingEvolution Molecular[INFO.INFO-CR]Computer Science [cs]/Cryptography and Security [cs.CR]03 medical and health sciencesPhylogeneticsChloroplast GenomePlant CellsGeneticsEvolutionary SystematicsGenome ChloroplastTaxonomyEvolutionary BiologyCoffea arabicaCoffeafungiBiology and Life SciencesComputational BiologyMolecular Sequence AnnotationSequence Analysis DNACell Biology15. Life on landbiology.organism_classificationGenome Analysis[INFO.INFO-MO]Computer Science [cs]/Modeling and SimulationGenome Annotation030104 developmental biologyEvolutionary biology[INFO.INFO-ET]Computer Science [cs]/Emerging Technologies [cs.ET]Plant BiotechnologySequence AlignmentPloS one
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Comparative Mitogenomics of Leeches (Annelida: Clitellata): Genome Conservation and Placobdella-Specific trnD Gene Duplication.

2015

Mitochondrial DNA sequences, often in combination with nuclear markers and morphological data, are frequently used to unravel the phylogenetic relationships, population dynamics and biogeographic histories of a plethora of organisms. The information provided by examining complete mitochondrial genomes also enables investigation of other evolutionary events such as gene rearrangements, gene duplication and gene loss. Despite efforts to generate information to represent most of the currently recognized groups, some taxa are underrepresented in mitochondrial genomic databases. One such group is leeches (Annelida: Hirudinea: Clitellata). Herein, we expand our knowledge concerning leech mitochon…

0106 biological sciences0301 basic medicineClitellatalcsh:MedicineBiochemistry01 natural sciencesGenomeDatabase and Informatics MethodsRNA TransferGene DuplicationGene OrderInvertebrate GenomicsGene duplicationAnnelidslcsh:SciencePhylogenyEnergy-Producing OrganellesData ManagementGeneticseducation.field_of_studyMultidisciplinaryPhylogenetic treePhylogenetic AnalysisGenomicsGenomic DatabasesMitochondriaNucleic acidsPhylogeneticsGenes MitochondrialPlacobdella parasiticaCellular Structures and OrganellesTransfer RNAResearch ArticleComputer and Information SciencesMitochondrial DNAPopulationBioenergeticsBiologyResearch and Analysis Methods010603 evolutionary biologyEvolution MolecularOpen Reading Frames03 medical and health sciencesPhylogeneticsLeechesGeneticsAnimalsEvolutionary Systematics14. Life underwaterCodonMolecular Biology TechniquesNon-coding RNAeducationMolecular BiologyTaxonomyMolecular Biology Assays and Analysis TechniquesEvolutionary Biologylcsh:ROrganismsBiology and Life SciencesComputational BiologyCell BiologyGenome Analysisbiology.organism_classificationInvertebratesBiological Databases030104 developmental biologyAnimal GenomicsGenome MitochondrialRNAlcsh:QPLoS ONE
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Towards a phylogenetic classification of Leptothecata (Cnidaria, Hydrozoa)

2016

AbstractLeptothecata are hydrozoans whose hydranths are covered by perisarc and gonophores and whose medusae bear gonads on their radial canals. They develop complex polypoid colonies and exhibit considerable morphological variation among species with respect to growth, defensive structures and mode of development. For instance, several lineages within this order have lost the medusa stage. Depending on the author, traditional taxonomy in hydrozoans may be either polyp- or medusa-oriented. Therefore, the absence of the latter stage in some lineages may lead to very different classification schemes. Molecular data have proved useful in elucidating this taxonomic challenge. We analyzed a supe…

0106 biological sciences0301 basic medicineCnidariaLikelihood FunctionsMultidisciplinarybiologyPhylogenetic treeZoologybiology.organism_classification010603 evolutionary biology01 natural sciencesArticlePhylogeography03 medical and health sciencesHydrozoa030104 developmental biologyTaxonPhylogeneticsAnimalsTaxonomy (biology)CladePhylogenyHydrozoaPhylogenetic nomenclatureScientific Reports
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Throwing down a genomic gauntlet on fisheries-induced evolution

2021

Beginning with studies on crypsis and camouflage, the hypothesis that predators can generate evolutionary change in their prey has a long and rich history (1). Few predators, however, rival humans in their potential to generate selection responses and concomitant phenotypic change on contemporary timescales. In the 1930s, J. B. S. Haldane (2) mused that fishing would be an ideal candidate for such “observable evolution” within a human lifetime, proceeding “with extreme and abnormal speed.” However, it was not until the late 1970s that research on fisheries-induced evolution (FIE) gained a substantive scientific foothold, beginning with thought-provoking work on Canadian whitefish ( Coregonu…

0106 biological sciences0301 basic medicineCoregonus clupeaformisFishingFisheriesevoluutioBiodiversity437430Polymorphism Single Nucleotide010603 evolutionary biology01 natural sciencesPredation03 medical and health sciencesPer capitaAnimals14. Life underwaterSemelparity and iteroparityPopulation DensityMultidisciplinaryPopulation BiologybiologykalakannatFishesGenomicsgenomiikkaBiological Sciencesbiology.organism_classificationBiological EvolutionkalastusFisherykalatalousOverexploitation030104 developmental biologyCrypsisCommentaryProceedings of the National Academy of Sciences
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Characterization of the resistance to Vip3Aa in Helicoverpa armigera from Australia and the role of midgut processing and receptor binding.

2016

AbstractCrops expressing genes from Bacillus thuringiensis (Bt crops) are among the most successful technologies developed for the control of pests but the evolution of resistance to them remains a challenge. Insect resistant cotton and maize expressing the Bt Vip3Aa protein were recently commercialized, though not yet in Australia. We found that, although relatively high, the frequency of alleles for resistance to Vip3Aa in field populations of H. armigera in Australia did not increase over the past four seasons until 2014/15. Three new isofemale lines were determined to be allelic with previously isolated lines, suggesting that they belong to one common gene and this mechanism is relative…

0106 biological sciences0301 basic medicineCrops AgriculturalInsecticidesHelicoverpa armigeraPlant disease resistanceMothsmedicine.disease_cause01 natural sciencesArticleMicrobiology03 medical and health sciencesBacterial ProteinsBacillus thuringiensisBotanymedicineAnimalsBinding siteGeneAllelesDisease ResistancePlant DiseasesMultidisciplinarybiologyToxinfungiAustraliaMidgutbiology.organism_classificationPlants Genetically Modified010602 entomology030104 developmental biologyCry1AcScientific reports
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Parallel diversifications of Cremastosperma and mosannona (annonaceae), tropical rainforest trees tracking neogene upheaval of South America

2018

Much of the immense present day biological diversity of Neotropical rainforests originated from the Miocene onwards, a period of geological and ecological upheaval in South America. We assess the impact of the Andean orogeny, drainage of Lake Pebas and closure of the Panama isthmus on two clades of tropical trees ( Cremastosperma , ca 31 spp.; and Mosannona , ca 14 spp.; both Annonaceae). Phylogenetic inference revealed similar patterns of geographically restricted clades and molecular dating showed diversifications in the different areas occurred in parallel, with timing consistent with Andean vicariance and Central American geodispersal. Ecological niche modelling approaches show phyloge…

0106 biological sciences0301 basic medicineDIVERSITY01 natural sciencesNiche modellingDISPERSALlcsh:ScienceMultidisciplinarybiologyEcologyAmazon rainforest70Biology (Whole Organism)ANDEAN UPLIFTPE&RCBiosystematieknicheGeographyGeodispersalinternationalISTHMUSMolecular datingCLADESPebas systemResearch Article1001Neotropics201004PHYLOGENY RECONSTRUCTIONRainforest010603 evolutionary biologymodelling03 medical and health sciencesHISTORICAL BIOGEOGRAPHYDIVERGENCEVicarianceSPECIATIONLaboratorium voor NematologieEcological nicheAndean orogenyAndean orogenyBiology and Life Sciencesbiology.organism_classificationEVOLUTION030104 developmental biologyMosannonaPanama isthmusBiosystematicslcsh:QEPSLaboratory of NematologyTropical rainforestRoyal Society Open Science
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