Search results for "Nonlinear"

showing 10 items of 3684 documents

A non-linear optimization procedure to estimate distances and instantaneous substitution rate matrices under the GTR model.

2006

Abstract Motivation: The general-time-reversible (GTR) model is one of the most popular models of nucleotide substitution because it constitutes a good trade-off between mathematical tractability and biological reality. However, when it is applied for inferring evolutionary distances and/or instantaneous rate matrices, the GTR model seems more prone to inapplicability than more restrictive time-reversible models. Although it has been previously noted that the causes for intractability are caused by the impossibility of computing the logarithm of a matrix characterised by negative eigenvalues, the issue has not been investigated further. Results: Here, we formally characterize the mathematic…

Statistics and ProbabilityOptimization problemBase Pair MismatchBiochemistryLinkage DisequilibriumNonlinear programmingInterpretation (model theory)Evolution MolecularApplied mathematicsComputer SimulationDivergence (statistics)Molecular BiologyEigenvalues and eigenvectorsPhylogenyMathematicsSequenceModels GeneticSubstitution (logic)Chromosome MappingGenetic VariationSequence Analysis DNAComputer Science ApplicationsComputational MathematicsComputational Theory and MathematicsNonlinear DynamicsLogarithm of a matrixAlgorithmAlgorithmsBioinformatics (Oxford, England)
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Haldane Model at finite temperature

2019

We consider the Haldane model, a 2D topological insulator whose phase is defined by the Chern number. We study its phases as temperature varies by means of the Uhlmann number, a finite temperature generalization of the Chern number. Because of the relation between the Uhlmann number and the dynamical transverse conductivity of the system, we evaluate also the conductivity of the model. This analysis does not show any sign of a phase transition induced by the temperature, nonetheless it gives a better understanding of the fate of the topological phase with the increase of the temperature, and it provides another example of the usefulness of the Uhlmann number as a novel tool to study topolog…

Statistics and ProbabilityPhase transitionGeneralizationFOS: Physical sciencesConductivity01 natural sciences010305 fluids & plasmasCondensed Matter - Strongly Correlated ElectronsPhase (matter)0103 physical sciencesStatistical physics010306 general physicsCondensed Matter - Statistical MechanicsPhysicstopological insulatorQuantum PhysicsChern classStatistical Mechanics (cond-mat.stat-mech)Strongly Correlated Electrons (cond-mat.str-el)Topological phase of matter phase transition geometric phase quantum transportStatistical and Nonlinear PhysicsTransverse planeTopological insulatorStatistics Probability and UncertaintyQuantum Physics (quant-ph)Sign (mathematics)
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Fisher Renormalization for Logarithmic Corrections

2008

For continuous phase transitions characterized by power-law divergences, Fisher renormalization prescribes how to obtain the critical exponents for a system under constraint from their ideal counterparts. In statistical mechanics, such ideal behaviour at phase transitions is frequently modified by multiplicative logarithmic corrections. Here, Fisher renormalization for the exponents of these logarithms is developed in a general manner. As for the leading exponents, Fisher renormalization at the logarithmic level is seen to be involutory and the renormalized exponents obey the same scaling relations as their ideal analogs. The scheme is tested in lattice animals and the Yang-Lee problem at t…

Statistics and ProbabilityPhase transitionLogarithmStatistical Mechanics (cond-mat.stat-mech)Multiplicative functionFOS: Physical sciencesStatistical and Nonlinear PhysicsStatistical mechanicsRenormalizationIdeal (order theory)Statistics Probability and UncertaintyCritical exponentScalingCondensed Matter - Statistical MechanicsMathematical physicsMathematics
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Generalized Heisenberg algebra and (non linear) pseudo-bosons

2018

We propose a deformed version of the generalized Heisenberg algebra by using techniques borrowed from the theory of pseudo-bosons. In particular, this analysis is relevant when non self-adjoint Hamiltonians are needed to describe a given physical system. We also discuss relations with nonlinear pseudo-bosons. Several examples are discussed.

Statistics and ProbabilityPhysical systemGeneral Physics and AstronomyFOS: Physical sciences01 natural sciencesbiorthogonal bases in quantum mechanicPhysics and Astronomy (all)0103 physical sciencesMathematical PhysicAlgebra over a field010306 general physicsSettore MAT/07 - Fisica MatematicaMathematical PhysicsComputingMilieux_MISCELLANEOUSMathematicsBoson[PHYS]Physics [physics]Quantum Physics010308 nuclear & particles physicsStatistical and Nonlinear PhysicsMathematical Physics (math-ph)pseudo-bosonAlgebraNonlinear systemModeling and Simulationgeneralized Heisenberg algebraQuantum Physics (quant-ph)[PHYS.ASTR]Physics [physics]/Astrophysics [astro-ph]Statistical and Nonlinear Physic
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Degree stability of a minimum spanning tree of price return and volatility

2002

We investigate the time series of the degree of minimum spanning trees obtained by using a correlation based clustering procedure which is starting from (i) asset return and (ii) volatility time series. The minimum spanning tree is obtained at different times by computing correlation among time series over a time window of fixed length $T$. We find that the minimum spanning tree of asset return is characterized by stock degree values, which are more stable in time than the ones obtained by analyzing a minimum spanning tree computed starting from volatility time series. Our analysis also shows that the degree of stocks has a very slow dynamics with a time-scale of several years in both cases.

Statistics and ProbabilityPhysics - Physics and SocietyFOS: Physical sciencesPhysics and Society (physics.soc-ph)Minimum spanning treeFOS: Economics and businessTime windowsStatisticsMathematical PhysicCluster analysisStock (geology)Condensed Matter - Statistical MechanicsMathematicsSpanning treeStatistical Finance (q-fin.ST)Statistical Mechanics (cond-mat.stat-mech)EconophysicQuantitative Finance - Statistical FinanceStatistical and Nonlinear PhysicsAsset returnCondensed Matter PhysicsSettore FIS/07 - Fisica Applicata(Beni Culturali Ambientali Biol.e Medicin)VolatilityCorrelation-based clusteringPrice returnVolatility (finance)
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First results on applying a non-linear effect formalism to alliances between political parties and buy and sell dynamics

2016

We discuss a non linear extension of a model of alliances in politics, recently proposed by one of us. The model is constructed in terms of operators, describing the \emph{interest} of three parties to form, or not, some political alliance with the other parties. The time evolution of what we call \emph{the decision functions} is deduced by introducing a suitable hamiltonian, which describes the main effects of the interactions of the parties amongst themselves and with their \emph{environments}, {which are }generated by their electors and by people who still have no clear {idea }for which party to vote (or even if to vote). The hamiltonian contains some non-linear effects, which takes into…

Statistics and ProbabilityPhysics - Physics and SocietyFormal structureFOS: Physical sciencesPhysics and Society (physics.soc-ph)01 natural sciences010305 fluids & plasmassymbols.namesakePolitics0103 physical sciencesQuantum models in macroscopic system010306 general physicsSettore MAT/07 - Fisica MatematicaMathematical PhysicsMathematicsEconophysicsEconophysicMathematical Physics (math-ph)Condensed Matter PhysicsNonlinear systemFormalism (philosophy of mathematics)AlliancesymbolsDecision processHamiltonian (quantum mechanics)Mathematical economicsPhysica A: Statistical Mechanics and its Applications
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Damping in quantum love affairs

2011

In a series of recent papers we have used an operatorial technique to describe stock markets and, in a different context, {\em love affairs} and their time evolutions. The strategy proposed so far does not allow any dumping effect. In this short note we show how, within the same framework, a strictly non periodic or quasi-periodic effect can be introduced in the model by describing in some details a linear Alice-Bob love relation with damping.

Statistics and ProbabilityPhysics - Physics and SocietyQuantum PhysicsQuantum tools for classical systemsFOS: Physical sciencesPhysics and Society (physics.soc-ph)Nonlinear Sciences - Chaotic DynamicsCondensed Matter PhysicsSocial systemDumpingEconomicsChaotic Dynamics (nlin.CD)Quantum Physics (quant-ph)Settore MAT/07 - Fisica MatematicaMathematical economicsQuantumStock (geology)Physica A: Statistical Mechanics and its Applications
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Quantum jump statistics with a shifted jump operator in a chiral waveguide

2019

Resonance fluorescence, consisting of light emission from an atom driven by a classical oscillating field, is well-known to yield a sub-Poissonian photon counting statistics. This occurs when only emitted light is detected, which corresponds to a master equation (ME) unraveling in terms of the canonical jump operator describing spontaneous decay. Formally, an alternative ME unraveling is possible in terms of a shifted jump operator. We show that this shift can result in sub-Poissonian, Poissonian or super-Poissonian quantum jump statistics. This is shown in terms of the Mandel Q parameter in the limit of long counting times, which is computed through large deviation theory. We present a wav…

Statistics and ProbabilityPhysics---Quantum PhysicsField (physics)FOS: Physical sciencesStatistical and Nonlinear Physics01 natural sciencesPhoton counting010305 fluids & plasmasOperator (computer programming)Resonance fluorescence0103 physical sciencesMaster equationStatisticsJumpdissipative systemsLight emissioncorrelation functionStatistics Probability and Uncertainty010306 general physicsQuantum Physics (quant-ph)Quantum
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Theory of the evaporation/condensation transition of equilibrium droplets in finite volumes

2003

Abstract A phenomenological theory of phase coexistence of finite systems near the coexistence curve that occurs in the thermodynamic limit is formulated for the generic case of d-dimensional ferromagnetic Ising lattices of linear dimension L with magnetization m slightly less than mcoex. It is argued that in the limit L→∞ an unconventional first-order transition occurs at a characteristic value mt

Statistics and ProbabilityPhysicsBinodalMagnetizationPhase transitionCondensed matter physicsFerromagnetismThermodynamic limitEvaporation condensationFinite systemThermodynamicsStatistical and Nonlinear PhysicsIsing modelPhysica A: Statistical Mechanics and its Applications
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Coulomb-interacting billiards in circular cavities

2013

We apply a molecular dynamics scheme to analyze classically chaotic properties of a two-dimensional circular billiard system containing two Coulomb-interacting electrons. As such, the system resembles a prototype model for a semiconductor quantum dot. The interaction strength is varied from the noninteracting limit with zero potential energy up to the strongly interacting regime where the relative kinetic energy approaches zero. At weak interactions the bouncing maps show jumps between quasi-regular orbits. In the strong-interaction limit we find an analytic expression for the bouncing map. Its validity in the general case is assessed by comparison with our numerical data. To obtain a more …

Statistics and ProbabilityPhysicsChaoticGeneral Physics and AstronomyStatistical and Nonlinear PhysicsElectronKinetic energyPotential energyMolecular dynamicsClassical mechanicsModeling and SimulationPhase spaceCoulombDynamical billiardsMathematical PhysicsJournal of Physics A: Mathematical and Theoretical
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