Search results for "OTA"

showing 10 items of 33012 documents

Barcoding of parasitoid wasps (Braconidae and Chalcidoidea) associated with wild and cultivated olives in the Western Cape of South Africa

2019

Wild and cultivated olives harbor and share a diversity of insects, some of which are considered agricultural pests, such as the olive fruit fly. The assemblage of olive-associated parasitoids and seed wasps is rich and specialized in sub-Saharan Africa, with native species possibly coevolving with their hosts. Although historical entomological surveys reported on the diversity of olive wasp species in the Western Cape Province of South Africa, no comprehensive study has been performed in the region in the molecular era. In this study, a dual approach combining morphological and DNA-based methods was used for the identification of adult specimens reared from olive fruits. Four species of B…

0106 biological sciences0301 basic medicineOlive fruit flyWaspsParasitismmedicine.disease_cause010603 evolutionary biology01 natural sciencesDNA barcodingParasitoid03 medical and health sciencesSouth AfricaOleaBotanyInfestationGeneticsmedicineAnimalsDNA Barcoding TaxonomicMolecular BiologyPhylogenybiologyfungiGeneral MedicineBiodiversityDNAbiology.organism_classification030104 developmental biologyGenetic distanceTaxonomy (biology)BraconidaeBiotechnologyGenome
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In-Field and Early Detection of Xylella fastidiosa Infections in Olive Using a Portable Instrument

2019

Xylella fastidiosa subsp. pauca (Xfp) is a gram-negative pathogenic bacteria responsible for serious diseases (Purcell, 2013) that inflicts considerable economic loss (Li et al., 2007; Luvisi et al., 2017). The pathogen has been linked to olive quick decline syndrome (OQDS). This devastating olive disease was first observed in Salento (Apulia, southeastern Italy) in 2009. Infected trees respond to Xfp infection with scattered desiccation of twigs and small branches in the upper crown, which extend to the rest of the canopy, showing the characteristic blight effect. The disease causes tree death within a few years from the onset of symptoms (Martelli, 2016). The primary agronomic procedure f…

0106 biological sciences0301 basic medicineOpinionmedia_common.quotation_subjectEarly detectionPlant BiologyPlant Sciencelcsh:Plant culture01 natural sciencesolive03 medical and health sciencesPhysics and Astronomy (all)olive quick decline syndromelcsh:SB1-1110media_commonXylella fastidiosabiologyin-field detectionArtbiology.organism_classificationIn-field detection; Olive; Olive quick decline syndrome; Portable instrument; Xylella fastidiosa030104 developmental biologyportable instrumentXylella fastidiosaHumanities010606 plant biology & botanyFrontiers in Plant Science
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Loncomelos koprulense (Asparagaceae), a new species from southern Turkey

2021

A new species, Loncomelos koprulense (Asparagaceae), is described and illustrated from southern Turkey. It is a very rare endemic species growing on small semi-rocky escarpments within the Köprülü Kanyon in the province of Antalya. Morphologically for its hairy leaves, L. koprulense shows some relationships with L. malatyanum and L. tardum, species localized in Anatolia too. The chromosome number of the new species is 2n = 2x = 22. Geographical distribution map for L. koprulense, L. malatyanum and L. tardum is provided.

0106 biological sciences0301 basic medicineOrnithogaleaeChromosome numberTurkeyLiliopsidaZoologyAsparagalesPlant ScienceOrnithogalum s.l.BiologyDistributionMediterranean01 natural sciences03 medical and health sciencesDistribution karyology Mediterranean Ornithogalum s.l. Ornithogaleae taxonomykaryologytaxonomyAsparagaceaeLoncomelosHyacinthaceaeEndemismPlantaeEcology Evolution Behavior and SystematicsAsparagaceaeSettore BIO/02 - Botanica SistematicaBotanyKaryotype030108 mycology & parasitologybiology.organism_classificationTracheophytaQK1-989Taxonomy (biology)Loncomelos010606 plant biology & botanyResearch ArticlePhytoKeys
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Pearl grafting: tracking the biological origin of nuclei by straightforward immunological methods.

2018

9 pages; International audience; French Polynesia is renowned for the production of Tahitian black pearl. These gems are obtained by grafting a nucleus into the gonad of a receiving oyster together with a graft, i.e. a small section of mantle tissue of a donor oyster. This procedure initiates the formation of a pearl sack around the nucleus, and subsequently, the deposition of concentric layers of nacre. The nucleus plays a key-role in pearl formation and its characteristics influence markedly the quality of the final product. As it is manufactured from mollusc shells, it contains a small percentage of organics. In the present paper, we used a set of biochemical techniques to characterize a…

0106 biological sciences0301 basic medicineOystermatrix proteinsAquatic Science01 natural sciences[ CHIM ] Chemical SciencesPinctada margaritifera03 medical and health sciences[ CHIM.ORGA ] Chemical Sciences/Organic chemistrybiology.animal[SDV.BBM.GTP]Life Sciences [q-bio]/Biochemistry Molecular Biology/Genomics [q-bio.GN]Botanymedicinebiology010604 marine biology & hydrobiologyPearl oysterPinctada margaritiferanucleusAmblemaMusselbiology.organism_classificationAmblema plicataAmblema plicata030104 developmental biologymedicine.anatomical_structureBiochemistry[ SDV.BBM.GTP ] Life Sciences [q-bio]/Biochemistry Molecular Biology/Genomics [q-bio.GN]ELISApearl oysterNucleusPinctada
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Biological control of potato soft rot caused by Dickeya solani and the survival of bacterial antagonists under cold storage conditions

2018

Dickeya and Pectobacterium are responsible for causing blackleg of plants and soft rot of tubers in storage and in the field, giving rise to losses in seed potato production. In an attempt to improve potato health, biocontrol activity of known and putative antagonists was screened using in vitro and in planta assays, followed by analysis of their persistence at various storage temperatures. Most antagonists had low survival on potato tuber surfaces at 4 °C. The population dynamics of the best low‐temperature tolerant strain and also the most efficient antagonist, Serratia plymuthica A30, along with Dickeya solani as target pathogen, was studied with TaqMan real‐time PCR throughout the stora…

0106 biological sciences0301 basic medicinePectobacteriumPopulationBlacklegCold storageblacklegDickeyaPlant ScienceHorticultureSerratia plymuthica A3001 natural sciencesEndophytebakteeritBiointeractions and Plant Health03 medical and health sciencespopulation dynamicsGeneticsserratia plymuthica A30kasvitauditCultivarta414education2. Zero hungereducation.field_of_studybiologyta1183fungifood and beveragesta4111biology.organism_classificationTaqMan real-time PCRpopulaatiodynamiikkabiocontrol agentHorticulture030104 developmental biologymärkämätäDickeya solaniAgronomy and Crop Science010606 plant biology & botanybiologinen torjunta
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Cultivar- and Wood Area-Dependent Metabolomic Fingerprints of Grapevine Infected by Botryosphaeria Dieback

2020

International audience; Botryosphaeria dieback is one of the most significant grapevine trunk diseases that affects the sustainability of the vineyards and provokes economic losses. The causal agents, Botryosphaeriaceae species, live in and colonize the wood of the perennial organs causing wood necrosis. Diseased vines show foliar symptoms, chlorosis, or apoplexy, associated to a characteristic brown stripe under the bark. According to the susceptibility of the cultivars, specific proteins such as PR-proteins and other defense-related proteins are accumulated in the brown stripe compared with the healthy woody tissues. In this study, we enhanced the characterization of the brown stripe and …

0106 biological sciences0301 basic medicinePerennial plant[SDV]Life Sciences [q-bio]Plant Science01 natural sciences03 medical and health sciencesMetabolomicsAscomycotaMetabolomicsVitisCultivarBotryosphaeriaPlant DiseasesChlorosisbiologyfood and beveragesBotryosphaeriaceaebiology.organism_classificationWoodHorticulture030104 developmental biologyPhytochemicalvisual_artvisual_art.visual_art_mediumBarkAgronomy and Crop Science010606 plant biology & botanyPhytopathology®
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Essential Oil Yield, Chemical Composition, and Total Citral Content of Nine Cultivars of Cymbopogon Species from Western India

2016

ABSTRACTThe essential oil composition of five elite Cymbopogon varieties (OD-19, Pragati, RRL-16, NLG-84) and a hybrid (CPK-25) and four new selections (LS-1 to LS-4) were determined by gas chromatography (GC) and gas chromatography-mass spectrometry (GC-MS). The oil yield ranged from 0.31% to 1.0% with CPK-25 (1.0%) and LS-2 (0.95%) containing the highest. A total of 66 compounds, constituting 84.6–94.3% of the oils, were identified. The main compounds were geranial (29.9–41.6%), neral (25.8–32.5%), citronellol (0.3–12.8%), geranyl acetate (1.2–8.4%), and geraniol (1.8–8.2%). Of the cultivars, OD-19 (74.1%) had the highest and LS-3 (55.7%) contained the lowest amount of total citral. CKP-2…

0106 biological sciences0301 basic medicinePharmacologyCitronellolGeranyl acetateCitral01 natural scienceslaw.invention03 medical and health scienceschemistry.chemical_compoundHorticulture030104 developmental biologyComplementary and alternative medicinechemistrylawBotanyComposition (visual arts)CultivarGas chromatographyEssential oilGeraniol010606 plant biology & botanyJournal of Herbs, Spices & Medicinal Plants
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Rhynchophorus ferrugineus attack affects a group of compounds rather than rearranging Phoenix canariensis metabolic pathways

2015

The red palm weevil (RPW; Rhynchophorus ferrugineus) is spreading worldwide and severely harming many palm species. However, most studies on RPW focused on insect biology, and little information is available about the plant response to the attack. In the present experiment, we used metabolomics to study the alteration of the leaf metabolome of Phoenix canariensis at initial (1st stage) or advanced (2nd stage) attack by RPW compared with healthy (unattacked) plants. The leaf metabolome significantly varied among treatments. At the 1st stage of attack, plants showed a reprogramming of carbohydrate and organic acid metabolism; in contrast, peptides and lipid metabolic pathways underwent more c…

0106 biological sciences0301 basic medicinePhenylpropanoidWeevilfood and beveragesPlant ScienceBiologybiology.organism_classification01 natural sciencesBiochemistryGeneral Biochemistry Genetics and Molecular BiologyTerpenoid03 medical and health sciencesMetabolic pathwayRhynchophorus030104 developmental biologyMetabolomicsBiochemistryPhoenix canariensisBotanyMetabolome010606 plant biology & botanyJournal of Integrative Plant Biology
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X!TandemPipeline: a tool to manage sequence redundancy for protein inference and phosphosite identification

2017

X!TandemPipeline is a software designed to perform protein inference and to manage redundancy in the results of phosphosite identification by database search. It provides the minimal list of proteins or phosphosites that are present in a set of samples using grouping algorithms based on the principle of parsimony. Regarding proteins, a two-level classification is performed, where groups gather proteins sharing at least one peptide and subgroups gather proteins that are not distinguishable according to the identified peptides. Regarding phosphosites, an innovative approach based on the concept of phosphoisland is used to gather overlapping phosphopeptides. The graphical interface of X!Tandem…

0106 biological sciences0301 basic medicinePhosphopeptidesProteomicsphosphopeptideComputer sciencecomputer.internet_protocolcomputer.software_genre01 natural sciencesBiochemistrydatabase search03 medical and health sciencesSearch engineUser-Computer InterfaceRedundancy (information theory)SoftwareTandem Mass Spectrometry[ INFO.INFO-BI ] Computer Science [cs]/Bioinformatics [q-bio.QM]HumansDatabase search engineAmino Acid SequenceDatabases ProteinGraphical user interfacemass spectrometrybusiness.industrysoftwareprotein inferenceProteinsGeneral ChemistrybioinformaticsSearch EngineBenchmarking030104 developmental biologyComputingMethodologies_PATTERNRECOGNITIONProtein inferenceData mining[INFO.INFO-BI]Computer Science [cs]/Bioinformatics [q-bio.QM]businesscomputerXMLAlgorithms010606 plant biology & botany
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Propagule pressure increase and phylogenetic diversity decrease community’s susceptibility to invasion

2017

Background Invasions pose a large threat to native species, but the question of why some species are more invasive, and some communities more prone to invasions than others, is far from solved. Using 10 different three-species bacterial communities, we tested experimentally if the phylogenetic relationships between an invader and a resident community and the propagule pressure affect invasion probability. Results We found that greater diversity in phylogenetic distances between the members of resident community and the invader lowered invasion success, and higher propagule pressure increased invasion success whereas phylogenetic distance had no clear effect. In the later stages of invasion,…

0106 biological sciences0301 basic medicinePhylogenetic similarity and propagule pressuremedia_common.quotation_subjectPhylogenetic distanceIntroduced speciesphylogenetic distanceBiologyBacterial Physiological Phenomena010603 evolutionary biology01 natural sciencesCompetition (biology)bakteerit03 medical and health sciencesInvasionphylogenetic similarity and propagule pressureAnimalsPhylogenySerratia marcescensQH540-549.5Ecology Evolution Behavior and SystematicsGeneral Environmental Sciencemedia_commonBacteriaCompetitionEcologyPhylogenetic treeEcologyCommunity identityPropagule pressureGenetic Variation15. Life on landinvasionPhylogenetic diversity030104 developmental biologyPhylogenetic distancecompetitionResearch ArticleBMC Ecology
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