Search results for "Ordination"
showing 10 items of 1367 documents
Do environmental diversity approaches lead to improved site selection? A comparison with the multi-species approach
2008
This paper suggests a new approach to select conservation areas cost-effectively according to the concept of complementarity and representation of focal natural features. The suggested environmental diversity (ED) site selection model maximizes ecological diversity, measured via ordination of the chosen taxa communities. Given their fundamental role in ecosystem functioning, vascular plants are chosen as the indicator taxa. We test the ED indicator model by contrasting it to the conventional site selection indicator (MS model), which maximizes the representation of species number in the indicator taxa. We demonstrate that the ED model is more cost-effective than the MS model. More important…
Model‐based approaches to unconstrained ordination
2014
Summary Unconstrained ordination is commonly used in ecology to visualize multivariate data, in particular, to visualize the main trends between different sites in terms of their species composition or relative abundance. Methods of unconstrained ordination currently used, such as non-metric multidimensional scaling, are algorithm-based techniques developed and implemented without directly accommodating the statistical properties of the data at hand. Failure to account for these key data properties can lead to misleading results. A model-based approach to unconstrained ordination can address this issue, and in this study, two types of models for ordination are proposed based on finite mixtu…
A novel method to predict dark diversity using unconstrained ordination analysis
2019
[Questions] Species pools are the product of complex ecological and evolutionary mechanisms, operating over a range of spatial scales. Here, we focus on species absent from local sites but with the potential to establish within communities — known as dark diversity. Methods for estimating dark diversity are still being developed and need to be compared, as well as tested for the type, and amount, of reference data needed to calibrate these methods. [Location] South Bohemia (48°58′ N, 14°28′ E) and Železné Hory (49°52′ N, 15°34′ E), Czech Republic. [Method] We compared a widely accepted algorithm to estimate species pools (Beals smoothing index, based on species co-occurrence) against a nove…
Classification of European and Mediterranean coastal dune vegetation
2018
Aims: Although many phytosociological studies have provided detailed local and regional descriptions of coastal dune vegetation, a unified classification of this vegetation in Europe and the Mediterranean Basin has been missing. Our aim is to produce a formalized classification of this vegetation and to identify the main factors driving its plant species composition at a continental scale. LocationAtlantic and Baltic coasts of Europe, Mediterranean Basin and the Black Sea region. - Methods: We compiled a database of 30,759 plots of coastal vegetation, which were resampled to reduce unbalanced sampling effort, obtaining a data set of 11,769 plots. We classified these plots with TWINSPAN, int…
Sampling effort and information quality provided by rare and common species in estimating assemblage structure
2020
Made available in DSpace on 2020-12-12T01:06:11Z (GMT). No. of bitstreams: 0 Previous issue date: 2020-03-01 Coordenação de Aperfeiçoamento de Pessoal de Nível Superior (CAPES) Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP) Academy of Finland Conselho Nacional de Desenvolvimento Científico e Tecnológico (CNPq) Reliable biological assessments are essential to answer ecological and management questions but require well-designed studies and representative sample sizes. However, large sampling effort is rarely possible, because it demands large financial resources and time, restricting the number of sites sampled, the duration of the study and the sampling effort at each site. In…
Variational Approximations for Generalized Linear Latent Variable Models
2017
Generalized linear latent variable models (GLLVMs) are a powerful class of models for understanding the relationships among multiple, correlated responses. Estimation, however, presents a major challenge, as the marginal likelihood does not possess a closed form for nonnormal responses. We propose a variational approximation (VA) method for estimating GLLVMs. For the common cases of binary, ordinal, and overdispersed count data, we derive fully closed-form approximations to the marginal log-likelihood function in each case. Compared to other methods such as the expectation-maximization algorithm, estimation using VA is fast and straightforward to implement. Predictions of the latent variabl…
The flourishing diversity of models in theoretical morphology: from current practices to future macroevolutionary and bioenvironmental challenges.
2008
17 pages; International audience; For decades, theoretical morphological studies of different groups of organisms have been successfully pursued in biological, paleontological, and computational contexts, often with distinct modeling approaches and research questions. A regular influx of new perspectives and varied expertise has contributed to the emergence of a veritable multidisciplinary outlook for theoretical morphology. The broadening of this discipline is reflected in a substantial increase in the number of models, leading to a bewildering diversity that has yet to be scrutinized. In this work, we tackle this issue in a synthetic fashion, with a quantitativemeta-analysis that allows a…
Do plant-based biogeographical regions shape aphyllophoroid fungal communities in Europe?
2018
Aim: Aphyllophoroid fungi are associated with plants, either using plants as a resource (as parasites or decomposers) or as symbionts (as mycorrhizal partners). In spite of their strong association with plants, it is unknown how much plant distributions determine their biogeographical patterns compared with environmental factors such as climate and human land use. In this study, our aims are to (1) describe the spatial diversity patterns of aphyllophoroid fungi in Europe and (2) identify the factors shaping these patterns. Location: Europe, as well as the adjacent Subarctic to Arctic islands (Greenland, Faroe Islands, Iceland, Svalbard), Palestine and the south-east coast of the Caspian Sea…
Formalized classification of European fen vegetation at the alliance level
2017
AimsPhytosociological classification of fen vegetation (Scheuchzerio palustris-Caricetea fuscae class) differs among European countries. Here we propose a unified vegetation classification of European fens at the alliance level, provide unequivocal assignment rules for individual vegetation plots, identify diagnostic species of fen alliances, and map their distribution.LocationEurope, western Siberia and SE Greenland.Methods29 049 vegetation-plot records of fens were selected from databases using a list of specialist fen species. Formal definitions of alliances were created using the presence, absence and abundance of Cocktail-based species groups and indicator species. DCA visualized the s…
Identification of weed community traits response to conservation agriculture
2013
International audience; Conservation agriculture is designed to deliver more sustainable cropping systems by preserving agricultural soils with tillage abandonment. However, knowledge on the impacts of Conservation agriculture adoption on weed infestation level and potential shifts in the composition of weed communities appears low and contradictory. We used a trait-based approach to investigate whether there are shifts in values of a set of traits within weed communities following the adoption of Direct Drilling with cover-crop (DD) which is one of the Conservation Agriculture practices. Weed surveys were conducted across a range of times since conversion to DD in 52 winter wheat fields lo…