Search results for "Organic Compounds"

showing 10 items of 271 documents

Aromatic and proteomic analyses corroborate the distinction between Mediterranean landraces and modern varieties of durum wheat

2016

AbstractIn this paper volatile organic compounds (VOCs) from durum wheat cultivars and landraces were analyzed using PTR-TOF-MS. The aim was to characterize the VOC’s profile of the wholemeal flour and of the kernel to find out if any VOCs were specific to varieties and sample matrices. The VOC data is accompanied by SDS-PAGE analyses of the storage proteins (gliadins and glutenins). Statistical analyses was carried out both on the signals obtained by MS and on the protein profiles. The difference between the VOC profile of two cultivars or two preparations of the same sample - matrices, in this case kernel vs wholemeal flour - can be very subtle; the high resolution of PTR-TOF-MS - down to…

0301 basic medicineMediterranean climateVOLATILE COMPOUNDSPTR-TOF-MS; VOLATILE COMPOUNDS; GLUTEN STRENGTH; RAPID CHARACTERIZATION; PROTEIN-COMPOSITION; EXTRUSION-COOKING; QUALITY; CULTIVARS; FLOUR; SUBUNITS02 engineering and technologyPROTEIN-COMPOSITIONGliadinFLOURSettore BIO/04 - Fisiologia VegetaleCultivarFood scienceTriticumMathematicschemistry.chemical_classificationPrincipal Component AnalysisMultidisciplinarybiologyvolatile organic compounds; protein composition; gluten strength; quality; cultivars021001 nanoscience & nanotechnologyWholemeal flourBiological EvolutionSUBUNITSCULTIVARSSettore AGR/02 - Agronomia E Coltivazioni ErbaceeItalyPlant proteinSeedsPrincipal component analysis0210 nano-technologyGLUTEN STRENGTHRAPID CHARACTERIZATIONGlutensArticle03 medical and health sciencesfoodBotanyQUALITYStorage proteinPlant breedingVolatile Organic CompoundsEXTRUSION-COOKINGDurum wheat Volatile Organic Compounds VOC profilefood.foodPlant Breeding030104 developmental biologychemistrySpectrometry Mass Matrix-Assisted Laser Desorption-Ionizationbiology.proteinPTR-TOF-MSGliadinScientific Reports
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In silico discovery of substituted pyrido[2,3-d]pyrimidines and pentamidine-like compounds with biological activity in myotonic dystrophy models

2016

Myotonic dystrophy type 1 (DM1) is a rare multisystemic disorder associated with an expansion of CUG repeats in mutant DMPK (dystrophia myotonica protein kinase) transcripts; the main effect of these expansions is the induction of pre-mRNA splicing defects by sequestering muscleblind-like family proteins (e.g. MBNL1). Disruption of the CUG repeats and the MBNL1 protein complex has been established as the best therapeutic approach for DM1, hence two main strategies have been proposed: targeted degradation of mutant DMPK transcripts and the development of CUG-binding molecules that prevent MBNL1 sequestration. Herein, suitable CUG-binding small molecules were selected using in silico approach…

0301 basic medicineMolecular biologyPhysiologyMutantMyotonic dystrophyDruggabilitylcsh:Medicine01 natural sciencesBiochemistryPhysical ChemistryMyoblastschemistry.chemical_compoundAnabolic AgentsMedicaments--InteraccióAnimal CellsDrug DiscoveryMedicine and Health SciencesMBNL1Drosophila ProteinsMyotonic Dystrophylcsh:ScienceRNA structureConnective Tissue CellsMultidisciplinaryMolecular StructureOrganic CompoundsStem CellsPhysicsRNA-Binding ProteinsBiological activityPhenotypeClimbingMolecular Docking SimulationNucleic acidsChemistryDrosophila melanogasterBiochemistryGenetic DiseasesConnective TissueRNA splicingPhysical SciencesCellular TypesAnatomyLocomotion57 - BiologiaSignal TransductionResearch ArticleBiotechnologyHydrogen bondingcongenital hereditary and neonatal diseases and abnormalitiesIn silicoPrimary Cell CultureComputational biologyBiology010402 general chemistryMyotonic dystrophyMyotonin-Protein KinaseDrug interactionsSmall Molecule Libraries03 medical and health sciencesStructure-Activity RelationshipmedicineAnimalsHumansRNA MessengerEnllaços d'hidrogenClinical GeneticsChemical PhysicsBiology and life sciencesChemical BondingBiological Locomotionlcsh:ROrganic ChemistryEstructura molecularChemical CompoundsHydrogen BondingCell BiologyFibroblastsmedicine.disease0104 chemical sciencesBenzamidinesAlternative SplicingDisease Models AnimalMacromolecular structure analysis030104 developmental biologyPyrimidinesBiological TissuechemistrySmall MoleculesRNAlcsh:QTrinucleotide Repeat ExpansionMolecular structure
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The Volatilomic Footprints of Human HGC-27 and CLS-145 Gastric Cancer Cell Lines

2021

The presence of certain volatile biomarkers in the breath of patients with gastric cancer has been reported by several studies; however, the origin of these compounds remains controversial. In vitro studies, involving gastric cancer cells may address this problem and aid in revealing the biochemical pathways underlying the production and metabolism of gastric cancer volatile indicators. Gas chromatography with mass spectrometric detection, coupled with headspace needle trap extraction as the pre-concentration technique, has been applied to map the volatilomic footprints of human HGC-27 and CLS-145 gastric cancer cell lines and normal Human Stomach Epithelial Cells (HSEC). In total, 27 volat…

0301 basic medicineNonanalEthyl acetateHexanalBiochemistry Genetics and Molecular Biology (miscellaneous)Biochemistry03 medical and health scienceschemistry.chemical_compound0302 clinical medicinevolatile organic compoundsMolecular Bioscienceslcsh:QH301-705.5Molecular BiologyOriginal ResearchChemistrygastric cancerMetabolismCLS-145HGC-27Heptanal030104 developmental biologychemical footprintBiochemistrylcsh:Biology (General)Cell culture030220 oncology & carcinogenesisCancer cellGas chromatography–mass spectrometryGC-MSFrontiers in Molecular Biosciences
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Mesopolysaccharides: The extracellular surface layer of visceral organs

2020

The mesothelium is a dynamic and specialized tissue layer that covers the somatic cavities (pleural, peritoneal, and pericardial) as well as the surface of the visceral organs such as the lung, heart, liver, bowel and tunica vaginalis testis. The potential therapeutic manipulation of visceral organs has been complicated by the carbohydrate surface layer—here, called the mesopolysaccharide (MPS)—that coats the outer layer of the mesothelium. The traditional understanding of MPS structure has relied upon fixation techniques known to degrade carbohydrates. The recent development of carbohydrate-preserving fixation for high resolution imaging techniques has provided an opportunity to re-examine…

0301 basic medicinePathologyRespiratory Systemlcsh:MedicineBiochemistryEpitheliumMice0302 clinical medicineLectinsMedicine and Health SciencesElectron Microscopylcsh:ScienceLungFixation (histology)MicroscopyMultidisciplinaryMembrane GlycoproteinsMicrovilliOrganic CompoundsChemistryQRThoraxExtracellular MatrixChemistrymedicine.anatomical_structureLiverTransmission electron microscopy030220 oncology & carcinogenesisPhysical SciencesPleuraeMedicineCellular Structures and OrganellesAnatomyResearch ArticleChemical Elementsmedicine.medical_specialtyScienceCarbohydratesResearch and Analysis MethodsRuthenium03 medical and health sciencesMicroscopy Electron TransmissionPolysaccharidesmedicineExtracellularAnimalsSurface layerProcess (anatomy)LungMyocardiumOrganic Chemistrylcsh:RChemical CompoundsBiology and Life SciencesProteinsCell BiologyMesothelium030104 developmental biologyMurine lungTransmission Electron Microscopylcsh:QLungsPLoS ONE
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A Thermodynamic Model of Monovalent Cation Homeostasis in the Yeast Saccharomyces cerevisiae

2016

Cationic and heavy metal toxicity is involved in a substantial number of diseases in mammals and crop plants. Therefore, the understanding of tightly regulated transporter activities, as well as conceiving the interplay of regulatory mechanisms, is of substantial interest. A generalized thermodynamic description is developed for the complex interplay of the plasma membrane ion transporters, membrane potential and the consumption of energy for maintaining and restoring specific intracellular cation concentrations. This concept is applied to the homeostasis of cation concentrations in the yeast cells of S. cerevisiae. The thermodynamic approach allows to model passive ion fluxes driven by the…

0301 basic medicinePhysiologyATPaseAntiporterYeast and Fungal ModelsPhysical ChemistryBiochemistryIon ChannelsCation homeostasisMedicine and Health SciencesHomeostasislcsh:QH301-705.5Membrane potentialEcologybiologyChemistryOrganic CompoundsPhysicsMonosaccharidesElectrophysiologyChemistryComputational Theory and MathematicsBiochemistryModeling and SimulationPhysical SciencesThermodynamicsProtonsAlgorithmsResearch ArticleChemical ElementsSaccharomyces cerevisiaeCarbohydratesSaccharomyces cerevisiaeResearch and Analysis MethodsMembrane PotentialModels Biological03 medical and health sciencesCellular and Molecular NeuroscienceSaccharomycesModel OrganismsCationsGeneticsMolecular BiologyEcology Evolution Behavior and SystematicsIon transporterNuclear PhysicsNucleonsIonsOrganic ChemistrySodiumChemical CompoundsOrganismsFungiBiology and Life SciencesComputational BiologyBiological Transportbiology.organism_classificationYeast030104 developmental biologyGlucoseMetabolismlcsh:Biology (General)SymporterActive transportbiology.proteinBiophysicsPLoS Computational Biology
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Insights into the inhibited form of the redox-sensitive SufE-like sulfur acceptor CsdE

2017

17 p.-8 fig.

0301 basic medicineProtein ConformationDimerlcsh:MedicineMolecular DynamicsCrystallography X-RayPhysical ChemistryBiochemistryDEAD-box RNA HelicasesMolecular dynamicschemistry.chemical_compoundComputational ChemistryNucleophileBiochemical Simulationslcsh:ScienceMultidisciplinaryCrystallographyChemistryOrganic CompoundsPhysicsEscherichia coli ProteinsCondensed Matter Physics3. Good healthPhysical sciencesChemistryCarbon-Sulfur LyasesBiochemistryCrystal StructureResearch ArticleChemical ElementsProtein subunitChemical physicschemistry.chemical_elementOxidative phosphorylationMolecular Dynamics Simulation03 medical and health sciencesThiolsEscherichia coliSolid State PhysicsProtein Interaction Domains and MotifsChemical BondingOrganic Chemistrylcsh:RChemical CompoundsBiology and Life SciencesComputational BiologyDimers (Chemical physics)Hydrogen BondingCell BiologySulfurAcceptorRedox sensitiveOxidative Stress030104 developmental biologyBiophysicslcsh:QProtein MultimerizationSulfur
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Performances of Different Metabolic Lactobacillus Groups During the Fermentation of Pizza Doughs Processed from Semolina

2018

The main hypothesis of this work is that facultative and obligate heterofermentative Lactobacillus species can differently impact the final characteristics of pizza. The objective was to evaluate separately the behaviors of the obligate heterofermentative species (OHS), such as Lactobacillus sanfranciscensis, Lactobacillus brevis, and Lactobacillus rossiae, and the facultative heterofermentative species (FHS), including Lactobacillus plantarum, and Lactobacillus curvatus, in the sourdoughs to be used for pizza production. The production of the experimental pizzas was carried out with semolina (Triticum turgidum L. ssp. durum). The acidification process—which was followed by pH, total titrat…

0301 basic medicineSeasoningsourdough fermentationfacultative heterofermentative species030106 microbiologyLactobacillus sanfranciscensisTitratable acidPlant ScienceBiochemistry Genetics and Molecular Biology (miscellaneous)03 medical and health scienceschemistry.chemical_compoundLactobacilluspizzavolatile organic compoundsFood scienceobligate heterofermentative specieobligate heterofermentative specieslcsh:TP500-660biologyfacultative heterofermentative speciefood and beveragesSettore AGR/15 - Scienze E Tecnologie Alimentaribiology.organism_classificationlcsh:Fermentation industries. Beverages. AlcoholLactic acidlactic acid bacteriachemistryFermentationshape descriptorshape descriptorsBacteriaLactobacillus plantarumFood ScienceSettore AGR/16 - Microbiologia Agraria
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The individual contribution of starter and non-starter lactic acid bacteria to the volatile organic compound composition of Caciocavallo Palermitano …

2017

Abstract The contribution of two starter ( Lactobacillus delbrueckii and Streptococcus thermophilus ) and nine non-starter ( Enterococcus casselliflavus , Enterococcus faecalis , Enterococcus durans , Enterococcus gallinarum , Lactobacillus casei , Lactobacillus paracasei , Lactobacillus rhamnosus , Pediococcus acidilactici and Pediococcus pentosaceus ) species of lactic acid bacteria (LAB) to the volatile organic compounds (VOCs) of Caciocavallo Palermitano cheese was investigated. The strains used in this study were isolated during the production/ripening of the stretched cheese and tested in a cheese-based medium (CBM). The fermented substrates were analyzed for the growth of the single …

0301 basic medicineStreptococcus thermophilusLactobacillus caseiSettore AGR/19 - Zootecnica SpecialeCheese based mediumLactobacillus paracaseiButanols030106 microbiologyCaciocavallo PalermitanoCaciocavallo Palermitano; Cheese based medium; Lactic acid bacteria; Ripened cheese; Volatile organic compounds; Food Science; MicrobiologyDiacetylXylenesMicrobiology03 medical and health sciencesEnterococcus gallinarumLactobacillus rhamnosusCheeseLactobacillusLactic acid bacteriaAnimalsLactobacillus rhamnosusStreptococcus thermophilusFood scienceLactobacillus delbrueckiiVolatile Organic CompoundsbiologyChemistryLacticaseibacillus rhamnosusPediococcus acidilacticifood and beveragesGeneral MedicineVolatile organic compoundbiology.organism_classificationCaciocavallo Palermitano; Cheese based medium; Lactic acid bacteria; Ripened cheese; Volatile organic compounds; Animals; Butanols; Butanones; Cheese; Diacetyl; Enterococcus; Fermentation; Hexanols; Lactobacillus casei; Lactobacillus delbrueckii; Lactobacillus rhamnosus; Milk; Streptococcus thermophilus; Volatile Organic Compounds; Xylenes; Food Science; MicrobiologyEnterococcus duransRipened cheeseButanonesLactic acid bacteria Caciocavallo Palermitano Ripened cheese Volatile organic compounds Cheese based mediumLacticaseibacillus casei030104 developmental biologyMilkFermentationbacteriaHexanolsLactobacillus caseiEnterococcusSettore AGR/16 - Microbiologia AgrariaFood Science
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Rett Syndrome Mutant Neural Cells Lacks MeCP2 Immunoreactive Bands.

2016

Dysfunctions of MeCP2 protein lead to various neurological disorders such as Rett syndrome and Autism. The exact functions of MeCP2 protein is still far from clear. At a molecular level, there exist contradictory data. MeCP2 protein is considered a single immunoreactive band around 75 kDa by western-blot analysis but several reports have revealed the existence of multiple MeCP2 immunoreactive bands above and below the level where MeCP2 is expected. MeCP2 immunoreactive bands have been interpreted in different ways. Some researchers suggest that multiple MeCP2 immunoreactive bands are unidentified proteins that cross-react with the MeCP2 antibody or degradation product of MeCP2, while others…

0301 basic medicineThreonineHeredityMethyl-CpG-Binding Protein 2Genetic LinkageMutantFluorescent Antibody TechniqueSocial Scienceslcsh:MedicinePC12 CellsBiochemistryEpitopeImmunoenzyme TechniquesCell FusionNeuroblastomaFluorescence MicroscopyAnimal CellsMedicine and Health SciencesPsychologyPost-Translational ModificationPhosphorylationAmino Acidslcsh:ScienceCells CulturedCross ReactivityNeuronsStainingMicroscopyMultidisciplinaryReverse Transcriptase Polymerase Chain ReactionOrganic CompoundsCell StainingLight MicroscopyTransfectionChemistryX-Linked TraitsSex LinkagePhysical SciencesCellular TypesResearch ArticleCell signalingCell Physiologycongenital hereditary and neonatal diseases and abnormalitiesBlotting WesternImmunologyRett syndromeBiologyReal-Time Polymerase Chain ReactionResearch and Analysis MethodsMECP203 medical and health sciencesNeurologiaAntigenHydroxyl Amino Acidsmental disordersmedicineRett SyndromeGeneticsAnimalsHumansRNA MessengerClinical GeneticsHEK 293 cellsOrganic Chemistrylcsh:RChemical CompoundsBiology and Life SciencesProteinsCell Biologymedicine.diseaseMolecular biologyRatsnervous system diseases030104 developmental biologyHEK293 CellsSpecimen Preparation and TreatmentCellular NeuroscienceMutationDevelopmental PsychologyMalaltieslcsh:QNeuroscience
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Shelf life study of healthy pork liver pate with added seaweed extracts from Ascophyllum nodosum, Fucus vesiculosus and Bifurcaria bifurcata

2018

The effect of the addition of seaweed extracts from three brown algae species [Ascophyllum nodosum (AN), Fucus vesiculosus (FV) and Bifurcaria bifurcata (BB which are a great source of natural antioxidants, on the oxidative stability of refrigerated low-fat pork liver pates was studied. In the studied pates, half of pork fat was replaced with a mixture consisting of canola and high-oleic sunflower oil (75:25, v/v), thus improving their fatty acid profile in terms of polyunsaturated fatty acids (PUFA). In order to avoid the oxidation of PUFA in the new samples, seaweed extracts (500 ppm) were added. In addition, some samples were formulated with a synthetic antioxidant (BHT at 50 ppm) (BHT) …

0301 basic medicineTime FactorsAntioxidantBifurcaria bifurcatamedicine.medical_treatmentSus scrofaAntioxidantsRefrigerationHealthy pateSunflower OilFood scienceDiet Fat-RestrictedAscophyllumchemistry.chemical_classificationbiologyChemistryAscophyllum nodosumFucus vesiculosus04 agricultural and veterinary sciences040401 food scienceMeat ProductsVolatile compoundsNutritive ValueOxidation-ReductionPolyunsaturated fatty acidfood.ingredientSeaweed extractsFucus vesiculosusShelf life03 medical and health sciences0404 agricultural biotechnologyfoodFood PreservationmedicineTBARSAnimalsOxidative stabilityVolatile Organic Compounds030109 nutrition & dieteticsSunflower oilFatty acidSeaweedbiology.organism_classificationRed MeatFucusFood MicrobiologyFood PreservativesRapeseed OilAscophyllumFood Science
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