Search results for "Osca"
showing 10 items of 1292 documents
The exceptionality of stress response in Magnaporthe oryzae: a set of “salt stress-induced” genes unique to the rice blast fungus
2017
The ability of pathogens to signal perception and adaptation to environmental changes is an important prerequisite for successful colonization of the host organism. Filamentous phytopathogenic fungi, for example, have to cope with rapid changes in the environment during invasive growth in planta. Consequently, they have evolved a range of specific factors contributing to environmental adaptation facilitating host invasion. In addition to conserved pathways, including genes participating in stress response, unique/individual genes within the pathogens might represent determinants of pathogenicity. Therefore, identification of unique genes could provide a set of excellent candidates for novel…
Temperature controls organic carbon sequestration in a subarctic lake
2016
AbstractWidespread ecological reorganizations and increases in organic carbon (OC) in lakes across the Northern Hemisphere have raised concerns about the impact of the ongoing climate warming on aquatic ecosystems and carbon cycling. We employed diverse biogeochemical techniques on a high-resolution sediment record from a subarctic lake in northern Finland (70°N) to examine the direction, magnitude and mechanism of change in aquatic carbon pools prior to and under the anthropogenic warming. Coupled variation in the elemental and isotopic composition of the sediment and a proxy-based summer air temperature reconstruction tracked changes in aquatic production, depicting a decline during a coo…
Pre and post-settlement movements of juvenile green turtles in the Southwestern Atlantic Ocean
2018
Abstract Detailed knowledge on migratory routes connecting distant breeding, developmental and foraging areas is a key prerequisite for the successful management of marine vertebrates. The present study combines stable isotopes analysis of carapace scutes and satellite tracking of juvenile green turtles as an experimental approach to understand the pre and post settlement (recruit to neritic habitats) movements in the Southwestern Atlantic Ocean. To this end, carapace scute biopsies were collected from 20 turtles foraging on coastal rocky outcrops in East Uruguay and sliced in successive 30-μm layers using a cryostat. The δ15N and δ13C values of the newest layer increased significantly with…
Land-use and climate related drivers of change in the reindeer management system in Finland: geography of perceptions
2021
Drivers of change in the reindeer management system are rather well-known. But when developing the gover-nance to support the traditional livelihoods, it is crucial to understand also practitioner perceptions. Systematic research on these is lacking. We analyzed the land-use and climate related drivers within the reindeer man-agement area (RMA) in Finland, and, using a perception geography approach, studied the herder perceptions towards these. We conducted an on-site questionnaire survey with herders from 51 herding districts. Factors directly affecting the welfare of reindeer were perceived as crucial by herders, for example basal icing affecting the forage availability, and land-use rela…
Long-Term Climate Trends and Extreme Events in Northern Fennoscandia (1914–2013)
2017
We studied climate trends and the occurrence of rare and extreme temperature and precipitation events in northern Fennoscandia in 1914–2013. Weather data were derived from nine observation stations located in Finland, Norway, Sweden and Russia. The results showed that spring and autumn temperatures and to a lesser extent summer temperatures increased significantly in the study region, the observed changes being the greatest for daily minimum temperatures. The number of frost days declined both in spring and autumn. Rarely cold winter, spring, summer and autumn seasons had a low occurrence and rarely warm spring and autumn seasons a high occurrence during the last 20-year interval (1994–2013…
A new species of Arctoseius Thor, 1930 (Acari: Ascidae) from taiga regions of the Palaearctic, with a key to Arctoseius species of Fennoscandia, NW E…
2017
A new mesostigmatid mite species belonging to the genus Arctoseius Thor, 1930, is described based on material from subarctic coniferous forests, Finland, and Altai highlands, Russia. Arctoseius ambiguus sp. nov. is similar to Arctoseius venustulus (Berlese, 1916), but can be distinguished from the latter by its larger size, wider dorsal shield, weakly sclerotized presternal platelets, pronounced differences in the length of opisthonotal setae, and distinct punctation of the anal shield. A key for 15 Arctoseius species recorded in continental North-Western Europe (Fennoscandia) is given. The Fennoscandian fauna of Arctoseius species is rather specialised. It includes four European temperate …
Oxygen and carbon isoscapes for the Baltic Sea : Testing their applicability in fish migration studies
2017
Conventional tags applied to individuals have been used to investigate animal movement, but these methods require tagged individuals be recaptured. Maps of regional isotopic variability known as “isoscapes” offer potential for various applications in migration research without tagging wherein isotope values of tissues are compared to environmental isotope values. In this study, we present the spatial variability in oxygen (δ18OH2O) and dissolved inorganic carbon (δ13CDIC) isotope values of Baltic Sea water. We also provide an example of how these isoscapes can reveal locations of individual animal via spatial probability surface maps, using the high-resolution salmon otolith isotope data fr…
Refining the Baveno VI elastography criteria for the definition of compensated advanced chronic liver disease
2021
Background: The Baveno VI consensus proposed a dual liver stiffness (LS) by transient elastography threshold of <10 and >15 kPa for excluding and diagnosing compensated advanced chronic liver disease (cACLD) in the absence of other clinical signs. Herein, we aimed to validate these criteria in a real-world multicentre study. Methods: We included 5,648 patients (mean age 51 ± 13 years, 53% males) from 10 European liver centres who had a liver biopsy and LS measurement within 6 months. We included patients with chronic hepatitis C (n = 2,913, 52%), non-alcoholic fatty liver disease (NAFLD, n = 1,073, 19%), alcohol-related liver disease (ALD, n = 946, 17%) or chronic hepatitis B (n = 716…
The cytoprotective protein MANF promotes neuronal survival independently from its role as a GRP78 cofactor
2021
Mesencephalic astrocyte-derived neurotrophic factor (MANF) is an endoplasmic reticulum (ER)-stress-regulated protein exhibiting cytoprotective properties through a poorly understood mechanism in various in vitro and in vivo models of neuronal and non-neuronal damage. Although initially characterized as a secreted neurotrophic factor for midbrain dopamine neurons, MANF has recently gained more interest for its intracellular role in regulating the ER homeostasis, including serving as a cofactor of the chaperone glucose-regulated protein 78 (GRP78). We aimed for a better understanding of the neuroprotective mechanisms of MANF. Here we show for the first time that MANF promotes the survival of …
EFMviz
2020
Elementary Flux Modes (EFMs) are a tool for constraint-based modeling and metabolic network analysis. However, systematic and automated visualization of EFMs, capable of integrating various data types is still a challenge. In this study, we developed an extension for the widely adopted COBRA Toolbox, EFMviz, for analysis and graphical visualization of EFMs as networks of reactions, metabolites and genes. The analysis workflow offers a platform for EFM visualization to improve EFM interpretability by connecting COBRA toolbox with the network analysis and visualization software Cytoscape. The biological applicability of EFMviz is demonstrated in two use cases on medium (Escherichia coli, iAF1…