Search results for "PHYLOGEOGRAPHY"
showing 10 items of 199 documents
Palaeoclimatic changes explain Anatolian mountain frog evolution: a test for alternating vicariance and dispersal events
2002
Holarctic biodiversity has been influenced by climatic fluctuations since the Pliocene. Asia Minor was one of the major corridors for postglacial invasions in the Palearctic. Today this area is characterized by an extraordinarily rich fauna with close affiliation to European, Asian and Indo-African biota. However, exact scenarios of range expansion and contraction are lacking. Using a phylogeographical approach we (i) identify monophyletic lineages among Anatolian mountain frogs and (ii) derive a spatio-temporal hypothesis for the invasion process in Anatolia. We sequenced 540 bp of the mitochondrial 16S rRNA gene from 40 populations of mountain frogs from Anatolia, the Elburz Mountains and…
Predicting and mapping human risk of exposure to
2019
Background Tick-borne diseases have become increasingly common in recent decades and present a health problem in many parts of Europe. Control and prevention of these diseases require a better understanding of vector distribution. Aim Our aim was to create a model able to predict the distribution of Ixodes ricinus nymphs in southern Scandinavia and to assess how this relates to risk of human exposure. Methods We measured the presence of I. ricinus tick nymphs at 159 stratified random lowland forest and meadow sites in Denmark, Norway and Sweden by dragging 400 m transects from August to September 2016, representing a total distance of 63.6 km. Using climate and remote sensing environmental …
Testing reticulate versus coalescent origins of Erica lusitanica using a species phylogeny of the northern heathers (Ericeae, Ericaceae).
2015
Whilst most of the immense species richness of heathers (Calluna, Daboecia and Erica: Ericeae; Ericaceae) is endemic to Africa, particularly the Cape Floristic Region, the oldest lineages are found in the Northern Hemisphere. We present phylogenetic hypotheses for the major clades of Ericeae represented by multiple accessions of all northern Erica species and placeholder taxa for the large nested African/Madagascan clade. We identified consistent, strongly supported conflict between gene trees inferred from ITS and chloroplast DNA sequences with regard to the position of Erica lusitanica. We used coalescent simulations to test whether this conflict could be explained by coalescent stochasti…
Data for: Genetic homogeneity in the deep-sea grenadier Macrourus berglax across the North Atlantic Ocean
2018
Microsatellite alleles in Genepop format. DNA sequences in fasta format with correspondent geographical coordinates.
Invasional meltdown via horizontal gene transfer of a European symbiosis island variant in North American nodule symbionts of Cytisus scoparius
2022
New data from sites in Spain, Sicily and North America establish that the spread of the European legume Cytisus scoparius (Scotch broom) across North America involved the concurrent invasion of a European mobile genetic element (symbiosis island [SI]) into North American Bradyrhizobium nodule bacteria. At four SI loci, bacteria from nine C. scoparius populations across the continent were all identical to haplotypes present in European Bradyrhizobium strains. At seven non-symbiotic (housekeeping) loci, these American C. scoparius bacteria grouped into eight diverse lineages related to, or in some cases identical to, symbionts from several native North American legumes. Inoculation experiment…
Genetics on Invasive Species
2002
Genetic markers are especially appropriate to reveal historical processes, as for example regarding biological invasions. Phylogenetic and population genetic methods enable to identify the taxa involved in an invasion (native and non-native species) and often lead to the perception of multiple or cryptic invasions. Phylogeographic and multi-locus approaches have been developed to assign individual invaders to potential source populations. The results may have implications for management measures. However, little is known about the genetic architecture of newly colonised populations. We introduce here genetic models for colonisations in linear habitats like rivers or coastlines. The expectat…
Geographical assemblages of European raptors and owls
2008
Abstract In this work we look for geographical structure patterns in European raptors (Order: Falconiformes) and owls (Order: Strigiformes). For this purpose we have conducted our research using freely available tools such as statistical software and databases. To perform the study, presence–absence data for the European raptors and owl species (Class Aves) were downloaded from the BirdLife International website. Using the freely available “pvclust” R-package, we applied similarity Jaccard index and cluster analysis in order to delineate biogeographical relationships for European countries. According to the cluster of similarity, we found that Europe is structured into two main geographical…
Phylogeographic analysis of the red seaweed Palmaria palmata reveals a Pleistocene marine glacial refugium in the English Channel
2005
Phylogeography has provided a new approach to the analysis of the postglacial history of a wide range of taxa but, to date, little is known about the effect of glacial periods on the marine biota of Europe. We have utilized a combination of nuclear, plastid and mitochondrial genetic markers to study the biogeographic history of the red seaweed Palmaria palmata in the North Atlantic. Analysis of the nuclear rDNA operon (ITS1-5.8S-ITS2), the plastid 16S-trnI-trnA-23S-5S, rbcL-rbcS and rpl12-rps31-rpl9 regions and the mitochondrial cox2-3 spacer has revealed the existence of a previously unidentified marine refugium in the English Channel, along with possible secondary refugia off the southwes…
Spatial and Temporal Patterns in the Evolution of the Flora of the European Alpine System
2003
This paper presents a perspective of how phylogenetic and phylogeographic hypotheses, based on nuclear DNA sequence variation (ITS) or amplified fragment length polymorphisms (AFLPs), can provide insights into the origin and evolution of the European high mountain flora. We focus on a diversity of unrelated herbaceous plant taxa that are broadly co-distributed across the European Alpine System, representing different taxonomic levels, and having either Mediterranean or Asian affinities (i.e., Anthyllis montana, Pritzelago alpina, Globularia vs. Soldanella, and Primula sect. Auricula). Our observations highlight that all taxa investigated began to diversify at the beginning of the Pleistocen…
Northern refugia and recent expansion in the North Sea: The case of the wrasse Symphodus melops (Linnaeus, 1758)
2011
Pleistocene climate changes have imposed extreme conditions to intertidal rocky marine communities, forcing many species to significant range shifts in their geographical distributions. Phylogeographic analyses based on both mitochondrial and nuclear genetic markers provide a useful approach to unravel phylogeographic patterns and processes of species after this time period, to gain general knowledge of how climatic changes affect shifts in species distributions.We analyzed these patterns on the corkwing wrasse (Symphodus melops, Labridae), a rocky shore species inhabiting North Sea waters and temperate northeastern Atlantic Ocean from Norway toMorocco including theAzores, using a fragment …