Search results for "POPULATIONS"
showing 10 items of 493 documents
The Concept of Duality and Applications to Markov Processes Arising in Neutral Population Genetics Models
1999
One possible and widely used definition of the duality of Markov processes employs functions H relating one process to another in a certain way. For given processes X and Y the space U of all such functions H, called the duality space of X and Y, is studied in this paper. The algebraic structure of U is closely related to the eigenvalues and eigenvectors of the transition matrices of X and Y. Often as for example in physics (interacting particle systems) and in biology (population genetics models) dual processes arise naturally by looking forwards and backwards in time. In particular, time-reversible Markov processes are self-dual. In this paper, results on the duality space are presented f…
A nonstationary cylinder-based model describing group dispersal in a fragmented habitat
2014
International audience; A doubly nonstationary cylinder-based model is built to describe the dispersal of a population from a point source. In this model, each cylinder represents a fraction of the population, i.e., a group. Two contexts are considered: The dispersal can occur in a uniform habitat or in a fragmented habitat described by a conditional Boolean model. After the construction of the models, we investigate their properties: the first and second order moments, the probability that the population vanishes, and the distribution of the spatial extent of the population.
Ancestral processes in population genetics-the coalescent.
2000
A special stochastic process, called the coalescent, is of fundamental interest in population genetics. For a large class of population models this process is the appropriate tool to analyse the ancestral structure of a sample of n individuals or genes, if the total number of individuals in the population is sufficiently large. A corresponding convergence theorem was first proved by Kingman in 1982 for the Wright-Fisher model and the Moran model. Generalizations to a large class of exchangeable population models and to models with overlying mutation processes followed shortly later. One speaks of the "robustness of the coalescent, as this process appears in many models as the total populati…
Remarks on ergodicity and invariant occupation measure in branching diffusions with immigration☆
2005
Abstract We give a necessary and sufficient condition for ergodicity with finite invariant occupation measure for branching diffusions with immigration. We do not assume uniformly subcritial reproduction means. We discuss the structure of the invariant occupation measure and of its density.
A Bayesian SIRS model for the analysis of respiratory syncytial virus in the region of Valencia, Spain
2014
We present a Bayesian stochastic susceptible-infected-recovered-susceptible (SIRS) model in discrete time to understand respiratory syncytial virus dynamics in the region of Valencia, Spain. A SIRS model based on ordinary differential equations has also been proposed to describe RSV dynamics in the region of Valencia. However, this continuous-time deterministic model is not suitable when the initial number of infected individuals is small. Stochastic epidemic models based on a probability of disease transmission provide a more natural description of the spread of infectious diseases. In addition, by allowing the transmission rate to vary stochastically over time, the proposed model provides…
The coalescent in population models with time-inhomogeneous environment
2002
AbstractThe coalescent theory, well developed for the class of exchangeable population models with time-homogeneous reproduction law, is extended to a class of population models with time-inhomogeneous environment, where the population size is allowed to vary deterministically with time and where the distribution of the family sizes is allowed to change from generation to generation. A new class of time-inhomogeneous coalescent limit processes with simultaneous multiple mergers arises. Its distribution can be characterized in terms of product integrals.
Role of the noise on the transient dynamics of an ecosystem of interacting species
2002
Abstract We analyze the transient dynamics of an ecosystem described by generalized Lotka–Volterra equations in the presence of a multiplicative noise and a random interaction parameter between the species. We consider specifically three cases: (i) two competing species, (ii) three interacting species (one predator–two preys), (iii) n-interacting species. The interaction parameter in case (i) is a stochastic process which obeys a stochastic differential equation. We find noise delayed extinction of one of two species, which is akin to the noise-enhanced stability phenomenon. Other two noise-induced effects found are temporal oscillations and spatial patterns of the two competing species. In…
Spatio-temporal patterns in population dynamics
2002
Abstract The transient dynamics of interacting biological species extracted from two ecosystems is investigated. We model the environment interaction by a multiplicative noise and the temperature oscillations by a periodic forcing. We find noise-induced effects such as enhanced temporal oscillations, spatial patterns and noise delayed extinction for the model of two competing species. We extend our analysis to an ecosystem of three interacting species, namely one predator and two preys. We find spatial patterns induced by the noise.
Discriminative pattern discovery for the characterization of different network populations
2023
Abstract Motivation An interesting problem is to study how gene co-expression varies in two different populations, associated with healthy and unhealthy individuals, respectively. To this aim, two important aspects should be taken into account: (i) in some cases, pairs/groups of genes show collaborative attitudes, emerging in the study of disorders and diseases; (ii) information coming from each single individual may be crucial to capture specific details, at the basis of complex cellular mechanisms; therefore, it is important avoiding to miss potentially powerful information, associated with the single samples. Results Here, a novel approach is proposed, such that two different input popul…
A stochastic interspecific competition model to predict the behaviour of Listeria monocytogenes in the fermentation process of a traditional Sicilian…
2008
The present paper discusses the use of modified Lotka-Volterra equations in order to stochastically simulate the behaviour of Listeria monocytogenes and Lactic Acid Bacteria (LAB) during the fermentation period (168 h) of a typical Sicilian salami. For this purpose, the differential equation system is set considering T, pH and aw as stochastic variables. Each of them is governed by dynamics that involve a deterministic linear decrease as a function of the time t and an "additive noise" term which instantaneously mimics the fluctuations of T, pH and aw. The choice of a suitable parameter accounting for the interaction of LAB on L. monocytogenes as well as the introduction of appropriate nois…