Search results for "PORP"

showing 10 items of 567 documents

Fe- but not Mg-protophorphyrin IX binds to a transmembrane b-type cytochrome.

2013

Transmembrane b-type cytochromes, which are crucially involved in electron transfer chains, bind one or more heme (Fe-protoporphyrin IX) molecules non-covalently. Similarly, chlorophylls are typically also non-covalently bound by several membrane integral polypeptides involved in photosynthesis. While both, chlorophyll and heme, are tetrapyrrole macrocycles, they have different substituents at the tetrapyrrole ring moiety. Furthermore, the central metal ion is Mg(2+) in chlorophyll and Fe(2+/3+) in heme. As heme and chlorophyll a have similar structures and might both be ligated by two histidine residues of a polypeptide chain, and as the local concentration of chlorophyll a might be up to …

Models MolecularChlorophyll aCytochromebiologyChemistryStereochemistryIronProtoporphyrinsCell BiologyHemeCytochromes bPhotochemistryTetrapyrroleElectron transferchemistry.chemical_compoundChlorophyllbiology.proteinMoietyMagnesiumMolecular BiologyHemeHistidineMolecular membrane biology
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Template-Assembled Synthetic G-Quadruplex (TASQ): A Useful System for Investigating the Interactions of Ligands with Constrained Quadruplex Topologies

2010

A new biomolecular device for investigating the interactions of ligands with constrained DNA quadruplex topologies, using surface plasmon resonance (SPR), is reported. Biomolecular systems containing an intermolecular-like G-quadruplex motif 1 (parallel G-quadruplex conformation), an intramolecular G-quadruplex 2, and a duplex DNA 3 have been designed and developed. The method is based on the concept of template-assembled synthetic G-quadruplex (TASQ), whereby quadruplex DNA structures are assembled on a template that allows precise control of the parallel G-quadruplex conformation. Various known G-quadruplex ligands have been used to investigate the affinities of ligands for intermolecular…

Models MolecularDna duplexPorphyrinsStereochemistryOligonucleotides010402 general chemistryG-quadruplexLigands01 natural sciencesCatalysischemistry.chemical_compoundStructure-Activity Relationship[CHIM.ANAL]Chemical Sciences/Analytical chemistry[CHIM]Chemical SciencesComputer SimulationBinding siteSurface plasmon resonancePromoter Regions GeneticNuclear Magnetic Resonance BiomolecularComputingMilieux_MISCELLANEOUSBinding SitesMolecular Structure010405 organic chemistryChemistryOrganic ChemistryGeneral ChemistryDNASurface Plasmon ResonanceAffinities0104 chemical sciencesQuadruplex DNAG-QuadruplexesIntramolecular forceNucleic Acid Conformation[ CHIM.ANAL ] Chemical Sciences/Analytical chemistryDNA
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Face-to-face held Pacman type porphyrin-fullerene dyads: design, synthesis, charge transfer interactions and photophysical studies

2008

Pacman-type face-to-face zinc-porphyrin-fullerene dyads have been newly synthesized and studied. Owing to the close proximity of the donor and acceptor entities, strong pi-pi intramolecular interactions between the porphyrin and fullerene entities resulted in modulating the spectral and electrochemical properties of the dyads. New absorption and emission bands that correspond to the charge-transfer interactions were observed in the near-IR region. Time-resolved transient absorption studies revealed efficient photoinduced electron transfer from the singlet excited porphyrin to the fullerene entity. The rate constants for photoinduced electron transfer are analyzed in terms of the Marcus theo…

Models MolecularFullereneMagnetic Resonance SpectroscopyPorphyrinsTime FactorsPhotochemistryporphyrinoids010402 general chemistryPhotochemistry01 natural sciencesCatalysisPhotoinduced electron transferElectron Transportchemistry.chemical_compoundElectron transfer[ CHIM.ORGA ] Chemical Sciences/Organic chemistryOrganometallic CompoundsComputingMilieux_MISCELLANEOUSphotosynthesisMolecular Structure010405 organic chemistryChemistry[CHIM.ORGA]Chemical Sciences/Organic chemistryOrganic Chemistrycharge transferfullerenesGeneral Chemistryelectron transferAcceptorPorphyrin0104 chemical sciencesMarcus theoryZincSpectrometry FluorescenceModels ChemicalExcited stateIntramolecular forceSpectrophotometry UltravioletDimerization
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Fluidity of liposome membranes doped with metalloporphyrins: An ESR study

2008

Changes in membrane fluidity of porphyrin-doped liposomes have been investigated to assess the kinetics of the fluidization process. Metal complexes of tert-butylphenyl mesosubstituted porphyrin, containing ions of Mg, Mn, Fe, Co, Ni and Cu, were used as dopants. Liposomes were obtained by sonication of hen egg yolk lecithin (EYL). Electron paramagnetic resonance (ESR) was applied using two spin probes, TEMPO (2,2,6,6-tetramethylpiperidine- 1-oxyl) and 16-DOXYL-stearic acid [2-ethyl-2-(15-methoxy-15-oxopentadecyl)-4,4- dimethyl-3-oxazolidinyloxyl], localized at different sites within the membrane to determine the spectroscopic parameters: partition (F) and rotation correlation time (τ), rel…

Models MolecularMembrane FluidityMetalloporphyrinsSonicationInorganic chemistryKineticsMolecular ConformationGeneral Biochemistry Genetics and Molecular Biologylaw.inventionEYL LiposomesMetalCyclic N-Oxideschemistry.chemical_compoundlawMembrane fluidityElectron paramagnetic resonanceESRLiposomeChemistryElectron Spin Resonance SpectroscopyPorphyrinKineticsMembranevisual_artLiposomesvisual_art.visual_art_mediumSpin Labels
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Design of Triads for Probing the Direct Through Space Energy Transfers in Closely Spaced Assemblies

2013

Using a selective stepwise Suzuki cross-coupling reaction, two trimers built on three different chromophores were prepared. These trimers exhibit a D(^)A1-A2 structure where the donor D (octa-β-alkyl zinc(II)porphyrin either as diethylhexamethyl, 10a, or tetraethyltetramethyl, 10b, derivatives) through space transfers the S1 energy to two different acceptors, di(4-ethylbenzene) zinc(II)porphyrin (A1; acceptor 1) placed cofacial with D, and the corresponding free base (A2; acceptor 2), which is meso-meso-linked with A1. This structure design allows for the possibility of comparing two series of assemblies, 9a,b (D(^)A1) with 10a,b (D(^)Â1-A2), for the evaluation of the S1 energy transfer for…

Models MolecularMetalloporphyrinsChemistryEnergy transferMolecular Conformationchemistry.chemical_elementFree baseZincChromophoreSpace (mathematics)AcceptorPorphyrinFluorescenceInorganic ChemistryCrystallographychemistry.chemical_compoundEnergy TransferDrug DesignPhysical and Theoretical ChemistryAtomic physicsInorganic Chemistry
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Synthesis and Self-Organization of Zinc β-(Dialkoxyphosphoryl)porphyrins in the Solid State and in Solution

2012

The first synthesis and self-organization of zinc β-phosphorylporphyrins in the solid state and in solution are reported. β-Dialkoxyphosphoryl-5,10,15,20-tetraphenylporphyrins and their Zn(II) complexes have been synthesized in good yields by using Pd- and Cu-mediated carbon-phosphorous bond-forming reactions. The Cu-mediated reaction allowed to prepare the mono-β-(dialkoxyphosphoryl)porphyrins 1 Zn-3 Zn starting from the β-bromo-substituted zinc porphyrinate ZnTPPBr (TPP = tetraphenylporphyrin) and dialkyl phosphites HP(O)(OR)(2) (R = Et, iPr, nBu). The derivatives 1 Zn-3 Zn were obtained in good yields by using one to three equivalents of CuI. When the reaction was carried out in the pres…

Models MolecularMetalloporphyrinschemistry.chemical_elementZincCrystallography X-Ray010402 general chemistryPhotochemistry01 natural sciencesCatalysisCatalysischemistry.chemical_compoundPolymer chemistryTetraphenylporphyrin[CHIM]Chemical SciencesComputingMilieux_MISCELLANEOUSMolecular Structure010405 organic chemistryOrganic ChemistryGeneral ChemistryNuclear magnetic resonance spectroscopyToluene0104 chemical sciencesSolutionsZincchemistryYield (chemistry)MethanolPalladiumChemistry - A European Journal
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Metalloporphyrin intercalation in liposome membranes: ESR study

2010

Liposomes characterized by membranes featuring diverse fluidity (liquid-crystalline and/or gel phase), prepared from egg yolk lecithin (EYL) and dipalmitoylphosphatidylcholine (DPPC), were doped with selected metalloporphyrins and the time-related structural and dynamic changes within the lipid double layer were investigated. Porphyrin complexes of Mg(II), Mn(III), Fe(III), Co(II), Ni(II), Cu(II), Zn(II), and the metal-free base were embedded into the particular liposome systems and tested for 350 h at 24°C using the electron spin resonance (ESR) spin probe technique. 5-DOXYL, 12-DOXYL, and 16-DOXYL stearic acid methyl ester spin labels were applied to explore the interior of the lipid bila…

Models MolecularOriginal PaperLiposomeMolecular StructureMetalloporphyrinsIntercalation (chemistry)Electron Spin Resonance SpectroscopyPorphyrinBiochemistryLipid bilayerSpin probeInorganic Chemistrychemistry.chemical_compoundCrystallographyMembranechemistryElectron spin resonanceDipalmitoylphosphatidylcholineLiposomesDensity functional theory calculationsOrganic chemistrylipids (amino acids peptides and proteins)Lipid bilayer phase behaviorLipid bilayerJBIC Journal of Biological Inorganic Chemistry
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Porphyrin-Based Design of Bioinspired Multitarget Quadruplex Ligands

2014

Secondary nucleic acid structures, such as DNA and RNA quadruplexes, are potential targets for cancer therapies. Ligands that interact with these targets could thus find application as anticancer agents. Synthetic G-quartets have recently found numerous applications, including use as bioinspired G-quadruplex ligands. Herein, the design, synthesis and preliminary biophysical evaluation of a new prototype multitarget G-quadruplex ligand, (PNA)PorphySQ, are reported, where peptidic nucleic acid guanine ((PNA)G) was incorporated in the porphyrin-templated synthetic G-quartet (PorphySQ). Using fluorescence resonance energy transfer (FRET)-melting experiments, PorphySQ was shown to possess enhanc…

Models MolecularPeptide Nucleic AcidsGuaninePorphyrinsStereochemistryGuanineLigands010402 general chemistryG-quadruplex01 natural sciencesBiochemistryStructure-Activity Relationship03 medical and health scienceschemistry.chemical_compoundDrug Discovery[CHIM]Chemical SciencesStructure–activity relationshipheterocyclic compoundsGeneral Pharmacology Toxicology and PharmaceuticsBinding siteComputingMilieux_MISCELLANEOUS030304 developmental biologyPharmacology0303 health sciencesBinding SitesChemistryLigandOrganic ChemistryDNA0104 chemical sciencesG-QuadruplexesFörster resonance energy transferNucleic acidNucleic Acid ConformationRNAMolecular MedicineDNAChemMedChem
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Exploring the redox reactivity of magnesium porphine. Insight into the origins of electropolymerisation.

2010

International audience; Magnesium(II) porphine, MgP (1), was synthesised according to the Lindsey procedure allowing to isolate and crystallise 1-formyldipyrromethane (2) as a synthetic intermediate. Unprecedented Xray diffraction studies revealed multiple intermolecular associations in the crystal between neighbouring units of 2, namely hydrogen bond and CH … π. The electrochemical behaviour of 1 was examined by means of cyclic voltammetry. In oxydation, two well-defined and distinct steps are assigned to macrocycle concerned electron transfers yielding initially the π-cation radical and π dication, respectively. The highly reactive dication condenses neutral magnesium porphine to form a d…

Models MolecularPorphyrinsInorganic chemistrychemistry.chemical_element010402 general chemistryElectrochemistryCrystallography X-Ray01 natural sciencesRedoxOligomerInorganic Chemistrychemistry.chemical_compound[CHIM.ANAL]Chemical Sciences/Analytical chemistryPolymer chemistryElectrochemistryOrganometallic Compounds[CHIM.COOR]Chemical Sciences/Coordination chemistryReactivity (chemistry)Magnesium[CHIM.ORGA]Chemical Sciences/Organic chemistry010405 organic chemistryHydrogen bondChemistryMagnesiumHydrogen Bonding[CHIM.MATE]Chemical Sciences/Material chemistry0104 chemical sciencesDicationCyclic voltammetryOxidation-ReductionDalton transactions (Cambridge, England : 2003)
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Photodynamics in stable complexes composed of a zinc porphyrin tripod and pyridyl porphyrins assembled by multiple coordination bonds

2010

A tripod zinc porphyrin (TPZn(3)) forms a stable 1:1 complex with gold(III) tetra(4-pyridyl)porphyrin (AuTPyP(+)) and free-base tris(4-pyridyl)porphyrin (2H-Py(3)P) in nonpolar solvents. The strong binding of TPZn(3) with AuTPyP(+) or 2H-Py(3)P results from the encapsulation of AuTPyP(+) or 2H-Py(3)P inside the cavity of TPZn(3) through multiple coordination bonds, as indicated by UV-vis-NIR, ESI-MS, (1)H NMR, electrochemistry and computational studies. The binding constants of monomer zinc porphyrin (MPZn) with AuTPyP(+) and 2H-Py(3)P drastically decrease as compared with TPZn(3). Detailed photophysical studies have been carried out on these composites using laser flash photolysis as well …

Models MolecularPorphyrinsMetalloporphyrinsPhotochemistryPyridinesTripod (photography)General Physics and Astronomychemistry.chemical_elementZincElectrochemistryPhotochemistryPorphyrinElectron TransportElectron transferchemistry.chemical_compoundMonomerchemistryFlash photolysisSinglet statePhysical and Theoretical ChemistryPhysical Chemistry Chemical Physics
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