Search results for "PPI"
showing 10 items of 7396 documents
A haplotype-resolved, de novo genome assembly for the wood tiger moth (Arctia plantaginis) through trio binning
2020
ABSTRACT Background Diploid genome assembly is typically impeded by heterozygosity because it introduces errors when haplotypes are collapsed into a consensus sequence. Trio binning offers an innovative solution that exploits heterozygosity for assembly. Short, parental reads are used to assign parental origin to long reads from their F1 offspring before assembly, enabling complete haplotype resolution. Trio binning could therefore provide an effective strategy for assembling highly heterozygous genomes, which are traditionally problematic, such as insect genomes. This includes the wood tiger moth (Arctia plantaginis), which is an evolutionary study system for warning colour polymorphism. F…
GeneSys-Beet: A model of the effects of cropping systems on gene flow between sugar beet and weed beet
2008
A weedy form of the genus Beta, i.e. Beta vulgaris ssp. vulgaris (hence ''weed beet'') frequently found in sugar beet is impossible to eliminate with herbicides because of its genetic proximity to the crop. It is presumed to be the progeny of accidental hybrids between sugar beet (ssp. vulgaris) and wild beet (ssp. maritima), or of sugar beet varieties sensitive to vernalization and sown early in years with late cold spells. In this context, genetically modified (GM) sugar beet varieties tolerant to non-selective herbicides would be interesting to manage weed beet. However, because of the proximity of the weed to the crop, it is highly probable that the herbicide-tolerance transgene would b…
Record of a 10-year old European Wildcat Felis silvestris silvestris Schreber, 1777 (Mammalia: Carnivora: Felidae) from Mt. Etna, Sicily, Italy
2020
Longevity data for wild felids are lacking in the literature. Here we report a camera trap recapture of a European Wildcat Felis silvestris at Mt. Etna in Sicily, Italy after nine years. This individual was clearly identifiable as its tail ended with a white ring rather than the typical black ring and had a unique shape of the dorsal stripe. At first capture on 26 May 2009, this cat was assessed as an adult, so that the likely minimum age of this individual at the time of recapture on 10 June 2018 must have been be at least 10 years. This finding represents the oldest known European Wildcat in the wild and provides insight into age structure in wildcat populations.
Weed and Weeding Effects on Medicinal Herbs
2017
Competition with weeds exerts significant depressive effects on yield and quality features of Medicinal Plants (MPs). According to the crop, the part of plant to be harvested, the environmental features (including cropping technique) and the severity of infestation, yield losses due to the presence of weeds may vary within wide intervals. Furthermore, unlike the majority of other crops, MPs are cultivated with the goal to obtain relevant quantities of specific secondary metabolites, whose final quantity determines the quality level (and, consequently, the market value) of the harvested drug. Almost all papers addressed to this topic agree on the statement that unrestricted weed growth may a…
Crop and density effects on weed beet growth and reproduction
2004
Summary Weed beet populations growing in each crop of the arable rotation could be a relay for the gene flow from adjacent transgenic herbicide-resistant sugarbeet. In this study, weed beet growth and reproduction were assessed under several conditions which could be found in the rotation: various weed beet densities (ranging from 1 to 120 plants m−2) and various crops (winter wheat, spring barley, spring pea, sugarbeet, maize, ryegrass). Measurements were carried out both on life-cycle dynamics (bolting time, time to flowering onset, dynamics of flower opening) and on other quantitative data (survival rate, bolting rate and pollen, flower and seed production). Increasing weed beet density …
Identification of weed community traits response to conservation agriculture
2013
International audience; Conservation agriculture is designed to deliver more sustainable cropping systems by preserving agricultural soils with tillage abandonment. However, knowledge on the impacts of Conservation agriculture adoption on weed infestation level and potential shifts in the composition of weed communities appears low and contradictory. We used a trait-based approach to investigate whether there are shifts in values of a set of traits within weed communities following the adoption of Direct Drilling with cover-crop (DD) which is one of the Conservation Agriculture practices. Weed surveys were conducted across a range of times since conversion to DD in 52 winter wheat fields lo…
Social information use about novel aposematic prey is not influenced by a predator’s previous experience with toxins
2019
Aposematism is an effective antipredator strategy. However, the initial evolution and maintenance of aposematism are paradoxical because conspicuous prey are vulnerable to attack by naive predators. Consequently, the evolution of aposematic signal mimicry is also difficult to explain. The cost of conspicuousness can be reduced if predators learn about novel aposematic prey by observing another predator's response to that same prey. On the other hand, observing positive foraging events might also inform predators about the presence of undefended mimics, accelerating predation on both mimics and their defended models. It is currently unknown, however, how personal and social information combi…
Movement of forest-dependent dung beetles through riparian buffers in Bornean oil palm plantations
2022
1. Fragmentation of tropical forests is increasing globally, with negative impacts for biodiversity. In Southeast Asia, expansion of oil palm agriculture has caused widespread deforestation, forest degradation and fragmentation. 2. Persistence of forest-dependent species within these fragmented landscapes is likely to depend on the capacity of individuals to move between forest patches. In oil palm landscapes, riparian buffers along streams and rivers are potential movement corridors, but their use by moving animals is poorly studied. 3. We examined how six dung beetle species traversed riparian buffers connected to a continuous forest reserve area within an oil palm plantation in Sabah, Ma…
Social learning within and across predator species reduces attacks on novel aposematic prey
2020
Abstract To make adaptive foraging decisions, predators need to gather information about the profitability of prey. As well as learning from prey encounters, recent studies show that predators can learn about prey defences by observing the negative foraging experiences of conspecifics. However, predator communities are complex. While observing heterospecifics may increase learning opportunities, we know little about how social information use varies across predator species.Social transmission of avoidance among predators also has potential consequences for defended prey. Conspicuous aposematic prey are assumed to be an easy target for naïve predators, but this cost may be reduced if multipl…
Automatic Profiling of Open-Ended Survey Data on Medical Workplace Teaching
2019
On-the-job medical training is known to be challenging due to the fast-paced environment and strong vocational profile. It relies on on-site supervisors, mainly doctors and nurses with long practical experience, who coach and teach their less experienced colleagues, such as residents and healthcare students. These supervisors receive pedagogical training to ensure that their guidance and teaching skills are constantly improved. The aim of such training is to develop participants’ patient, collegiate and student guidance skills in a multiprofessional environment, and to expand their understanding of guidance as part of their work as supervisors of healthcare professionals. In this paper, we …