Search results for "Peat"
showing 10 items of 1026 documents
The role of the Strait of Gibraltar in shaping the genetic structure of the Mediterranean Grenadier, Coryphaenoides mediterraneus, between the Atlant…
2017
24 pages, 4 figures, 4 tables, supplementary information https://dx.doi.org/10.1371/journal.pone.0174988.-- Data Availability: The mtDNA COI sequences can be accessed at BOLD systems through the sample ID: ME-9911; ME-11972; ME-13727; GLF011. New mtDNA COI sequences can be accessed at GenBank by the accession numbers KY345206 - KY345398. GenBank accession numbers for close related species of C. mediterraneus are: Coryphaenoides striaturus - KX656427.1, KX656428.1; Coryphaenoides murray - KX656411.1, KX656410.1; Coryphaenoides carapinus - KX656382.1, KX656381.1; Coryphaenoides brevibarbis - KX656377.1, KX656376.1, KX656375.1. An alignment in fasta with all the haplotypes and respective frequ…
Genetic variation of naturally growing olive trees in Israel: from abandoned groves to feral and wild?
2016
Background Naturally growing populations of olive trees are found in the Mediterranean garrigue and maquis in Israel. Here, we used the Simple Sequence Repeat (SSR) genetic marker technique to investigate whether these represent wild var. sylvestris. Leaf samples were collected from a total of 205 trees at six sites of naturally growing olive populations in Israel. The genetic analysis included a multi-locus lineage (MLL) analysis, Rousset’s genetic distances, Fst values, private alleles, other diversity values and a Structure analysis. The analyses also included scions and suckers of old cultivated olive trees, for which the dominance of one clone in scions (MLL1) and a second in suckers (…
Is the ballan wrasse (Labrus bergylta) two species? Genetic analysis reveals within-species divergence associated with plain and spotted morphotype f…
2016
Abstract The ballan wrasse (Labrus bergylta) is a marine fish belonging to the family Labridae characterized by 2 main morphotypes that occur in sympatry: spotty and plain. Previous studies have revealed differences in their life‐history traits, such as growth and maturation; however, the genetic relationship between forms is presently unknown. Using 20 recently developed microsatellite markers, we conducted a genetic analysis of 41 and 48 spotty and plain ballan wrasse collected in Galicia (northwest Spain). The 2 morphotypes displayed highly significant genetic differences to each other (F ST = 0.018, P < 0.0001). A similar degree of genetic differentiation (F ST = 0.025, P < 0.0001) was …
Variation in gene expression within clones of the earthworm Dendrobaena octaedra
2017
Gene expression is highly plastic, which can help organisms to both acclimate and adapt to changing environments. Possible variation in gene expression among individuals with the same genotype (among clones) is not widely considered, even though it could impact the results of studies that focus on gene expression phenotypes, for example studies using clonal lines. We examined the extent of within and between clone variation in gene expression in the earthworm Dendrobaena octaedra, which reproduces through apomictic parthenogenesis. Five microsatellite markers were developed and used to confirm that offspring are genetic clones of their parent. After that, expression of 12 genes was measured…
The effects of drainage and restoration of pine mires on habitat structure, vegetation and ants
2016
Habitat loss and degradation are the main threats to biodiversity worldwide. For example, nearly 80% of peatlands in southern Finland have been drained. There is thus a need to safeguard the remaining pristine mires and to restore degraded ones. Ants play a pivotal role in many ecosystems and like many keystone plant species, shape ecosystem conditions for other biota. The effects of mire restoration and subsequent vegetation succession on ants, however, are poorly understood. We inventoried tree stands, vegetation, water-table level, and ants (with pitfall traps) in nine mires in southern Finland to explore differences in habitats, vegetation and ant assemblages among pristine, drained (30…
Substantial decline of Northern European peatland bird populations: Consequences of drainage
2017
Northern European peatlands are important habitats for biological conservation because they support rich biodiversity and unique species compositions. However, historical management of peatland habitats has had negative consequences for biodiversity and their degradation remains a major conservation concern. Despite increasing awareness of the conservation value of peatlands, the statuses and ecological requirements of peat land species have remained largely understudied. Here, we first analysed temporal trends of Northern European peatland birds to document the status of their populations using bird data from five different countries. Second, we used Finnish monitoring data to assess habit…
Emergence phenology and ecology of aquatic and semi-terrestrial insects on a boreal raised bog in Central Finland
1988
Emergence of peatland insects was studied in Central Finland by sampling insects on a raised bog with tent traps from five different surfaces: muddy hollow without vegetation; hollow covered with Sphagnum; deep (0.7-0.9 m) open-water pool; shallow (about 0.3 m) pool with bottom covered by Carex vegetation; shallow (about 0.3 m) pool with bare muddy bottom. The material was collected at two-days intervals from 13 May until 31 August in 1981. Biomass emerging from the sites varied considerably. In general, aquatic sites were clearly more productive than semi-terrestrial sites. Corrected total biomass values for deep pools, shallow Carex pools, and shallow mud pools were 2.471, 1.066, and 0.51…
Lack of molluscan host diversity and the transmission of an emerging parasitic disease in Bolivia.
2001
Fasciolosis is a re-emerging parasitic disease that affects an increasing number of people in developing countries. The most severe endemic affects the Bolivian Altiplano, where the liver fluke (Fasciola hepatica) and its hermaphroditic snail host, Lymnaea truncatula, have been introduced from Europe. To achieve a better understanding of the epidemiological situation and the consequences of the colonization event of this invasive species, genetic analysis of Bolivian snail populations was needed. Here we compare the genetic diversity and population structure of snail samples from the Bolivian Altiplano with samples from the Old World at six polymorphic microsatellite loci. Whereas some vari…
Specialist butterflies benefit most from the ecological restoration of mires
2016
Abstract Anthropogenic disturbances cause biotic homogenization through the replacement of specialist species with generalists. Restoration has the potential to counteract these negative effects. Recently, restoration in the peatlands of Northern Europe has started to show positive effects on biodiversity. However, seldom have studies evaluated the response of insects to restoration by comparing populations prior to restoration to those thereafter with a Before-After Control-Impact (BACI) design. The aim of this study was to evaluate whether the restoration actions taken were appropriate to facilitate the successful recolonization of mire butterflies and plants. We found that, generally, dr…
De novo genome assembly of the land snail Candidula unifasciata (Mollusca: Gastropoda)
2021
Abstract Among all molluscs, land snails are a scientifically and economically interesting group comprising edible species, alien species and agricultural pests. Yet, despite their high diversity, the number of genome drafts publicly available is still scarce. Here, we present the draft genome assembly of the land snail Candidula unifasciata, a widely distributed species along central Europe, belonging to the Geomitridae family, a highly diversified taxon in the Western-Palearctic region. We performed whole genome sequencing, assembly and annotation of an adult specimen based on PacBio and Oxford Nanopore long read sequences as well as Illumina data. A genome draft of about 1.29 Gb was gene…