Search results for "Peat"
showing 10 items of 1026 documents
APOBEC4 Enhances the Replication of HIV-1
2016
APOBEC4 (A4) is a member of the AID/APOBEC family of cytidine deaminases. In this study we found a high mRNA expression of A4 in human testis. In contrast, there were only low levels of A4 mRNA detectable in 293T, HeLa, Jurkat or A3.01 cells. Ectopic expression of A4 in HeLa cells resulted in mostly cytoplasmic localization of the protein. To test whether A4 has antiviral activity similar to that of proteins of the APOBEC3 (A3) subfamily, A4 was co-expressed in 293T cells with wild type HIV-1 and HIV-1 luciferase reporter viruses. We found that A4 did not inhibit the replication of HIV-1 but instead enhanced the production of HIV-1 in a dose-dependent manner and seemed to act on the viral L…
Evolution-guided evaluation of the inverted terminal repeats of the synthetic transposon Sleeping Beauty.
2018
Abstract Sleeping Beauty (SB) is a synthetic Tc1/mariner transposon that is widely used for genetic engineering in vertebrates, including humans. Its sequence was derived from a consensus of sequences found in fish species including the Atlantic salmon (Salmo salar). One of the functional components of SB, the transposase enzyme, has been subject to extensive mutagenesis yielding hyperactive protein variants for advanced applications. The second functional component, the transposon inverted terminal repeats (ITRs), has so far not been extensively modified, mainly due to a lack of natural sequence information. Importantly, as genome sequences become available, they can provide a rich source …
Individual differences in the induction of sensitisation or tolerance to the motor effects of morphine in mice
2001
Acute morphine administration produces hyperactivity in most strains of mice and some studies indicate that repeated treatment can induce a potentiation of this effect (sensitisation). With the object of determining whether the hyperactivity induced by morphine in OF1 mice shows sensitisation after repeated administration, we tested the effect of the pre-exposure to six daily injections of morphine on the subsequent hyperactivity induced by the same dose of this drug. Animals were treated with 40 mg/kg of morphine for seven days. After the last injection they were tested in an actimeter at different points at time (15, 30, 45 and 60 min). This repeated schedule of treatment produced sensiti…
Characterization of Radio Frequency Echo using frequency sweeping and power analysis
2014
International audience; Coupling between repeater's antennas, called Radio Frequency Echo (RFE) deteriorates signal quality and compromises system stability. If the channel insulation is insufficient, the power in the closed-loop raises with time according to the gain margin value. Multiple methods of echo cancellation exists. Generally, these techniques are based on correlation calculation and adaptive filtering. However, their efficiency and algorithm's convergence speed are calling into question under signal's modulation and real-time constraints, specially with narrow band signals having frequency hopping as GSM or TETRA. This paper describes a real time method of RFE detection and esti…
Waiting time in quantum repeaters with probabilistic entanglement swapping
2019
The standard approach to realize a quantum repeater relies upon probabilistic but heralded entangled state manipulations and the storage of quantum states while waiting for successful events. In the literature on this class of repeaters, calculating repeater rates has typically depended on approximations assuming sufficiently small probabilities. Here we propose an exact and systematic approach including an algorithm based on Markov chain theory to compute the average waiting time (and hence the transmission rates) of quantum repeaters with arbitrary numbers of links. For up to four repeater segments, we explicitly give the exact rate formulae for arbitrary entanglement swapping probabiliti…
All-optical long-distance quantum communication with Gottesman-Kitaev-Preskill qubits
2021
Quantum repeaters are a promising platform for realizing long-distance quantum communication and thus could form the backbone of a secure quantum internet, a scalable quantum network, or a distributed quantum computer. Repeater protocols that encode information in single- or multi-photon states are limited by transmission losses and the cost of implementing entangling gates or Bell measurements. In this work, we consider implementing a quantum repeater protocol using Gottesman-Kitaev-Preskill (GKP) qubits. These qubits are natural elements for quantum repeater protocols, because they allow for deterministic Gaussian entangling operations and Bell measurements, which can be implemented at ro…
RepeatsDB in 2021: improved data and extended classification for protein tandem repeat structures
2020
The RepeatsDB database (URL: https://repeatsdb.org/) provides annotations and classification for protein tandem repeat structures from the Protein Data Bank (PDB). Protein tandem repeats are ubiquitous in all branches of the tree of life. The accumulation of solved repeat structures provides new possibilities for classification and detection, but also increasing the need for annotation. Here we present RepeatsDB 3.0, which addresses these challenges and presents an extended classification scheme. The major conceptual change compared to the previous version is the hierarchical classification combining top levels based solely on structural similarity (Class > Topology > Fold) with two new lev…
Mapping and structure of DMXL1, a human homologue of the DmX gene from Drosophila melanogaster coding for a WD repeat protein.
2000
The DmX gene was recently isolated from the X chromosome of Drosophila melanogaster. TBLASTN searches of the dbEST databases revealed sequences with a high level of similarity to DmX in a variety of different species, including insects, nematodes, and mammals showing that DmX is an evolutionarily highly conserved gene. Here we describe the cloning of the cDNA and the chromosomal localization of one of the human homologues of DmX, Dmx-like 1 (DMXL1). The human DMXL1 gene codes for a large mRNA of 11 kb with an open reading frame of 3027 amino acids. The putative protein belongs to the superfamily of WD repeat proteins, which have mostly regulatory functions. The DMXL1 protein contains an exc…
ZFWD: a novel subfamily of plant proteins containing a C3H zinc finger and seven WD40 repeats
2000
We describe a new subfamily of WD repeat proteins characterised by the presence of a C3H zinc finger at the N-terminal part of the protein associated with seven WD40 repeats. We have identified four members of this subfamily in Arabidopsis thaliana, one of them with associated expressed sequence tags (ESTs). We have also identified homologous ESTs in rice, cotton, maize, poplar, pine tree and the ice plant. We do not observe animal homologues, suggesting that this subfamily could be specific for plants. Our data suggest an important role for these proteins. Based on the high sequence conservation within the conserved domains, we suggest that these proteins could have a regulatory function.
REP2: A Web Server to Detect Common Tandem Repeats in Protein Sequences
2020
Ensembles of tandem repeats (TRs) in protein sequences expand rapidly to form domains well suited for interactions with proteins. For this reason, they are relatively frequent. Some TRs have known structures and therefore it is advantageous to predict their presence in a protein sequence. However, since most TRs diverge quickly, their detection by classical sequence comparison algorithms is not very accurate. Previously, we developed a method and a web server that used curated profiles and thresholds for the detection of 11 common TRs. Here we present a new web server (REP2) that allows the analysis of TRs in both individual and aligned sequences. We provide currently precomputed analyses f…