Search results for "Phylogenetic"

Comparative Cytogenetic Analysis of Three Stylommatophoran Slugs (Mollusca, Pulmonata)

2009

system is still controversial because phylogeny and systematic relationships at the family level are poorly understood. Besides morphological studies, ribosomal RNA genes and the H3/H4 histone gene cluster (Ambruster et al., 2005; Wade et al., 2006) have also been used to resolve the relationships within this order. Recently, by comparison of primary sequence of mitochondrial and nuclear genes, Grande et al. (2004) resolved the Stylommatophora as the early split monophyletic sister group of all the other gastropod taxa. Available data on the cytogenetics of Stylommatophora are extremely poor (reviewed by Patterson, 1969, and Thiriot-Quievreux, 2003) and mostly concern the haploid (n) and/ o…

2015

Songs in passerine birds are important for territory defense and mating. Speciation rates in oscine passerines are so high, due to cultural evolution, that this bird lineage makes up half of the extant bird species. Leaf warblers are a speciose Old-World passerine family of limited morphological differentiation, so that songs are even more important for species delimitation. We took 16 sonographic traits from song recordings of 80 leaf warbler taxa and correlated them with 15 potentially explanatory variables, pairwise, and in linear models. Based on a well-resolved molecular phylogeny of the same taxa, all pairwise correlations were corrected for relatedness with phylogenetically independe…

Distribution of basal-expressed c-fos-like immunoreactive cells of the periaqueductal grey matter of the rat.

1996

The distribution of c-fos proto-oncogene expression has been studied in the periaqueductal grey matter (PAG) of non-intentional-stimulated rats by immunohistochemistry. A mean number of 53 +/- 9 Fos-like immunoreactive cells per hemiPAG, distributed into three groups, dorsolateral, lateral and ventrolateral, was found. The dorsolateral and the lateral groups appeared along the entire rostrocaudal PAG, whereas the ventrolateral group appeared only in the caudal half. These results reveal new data on the number and extent of the longitudinal columns within the hypothetical organization of the PAG. They also indicate a continuous activation of a significant population of neurones in the PAG, i…

Reappraisal of some species of the giant galericine Deinogalerix (Mammalia, Eulipotyphla, Erinaceomorpha, Erinaceidae) from the Miocene of south-east…

2019

A revision of the remains of Deinogalerix from the Terre Rosse of Gargano, stored at the Department of Earth Sciences of Florence, improved our knowledge of the genus. The goals of this study are to clear the taxonomic status of the specimens and to tackle several issues connected with the evolutionary relationships of the different species. The sample of dental remains of Deinogalerix freudenthali provides new information, which confirms that this species belongs to the most primitive members of the genus, alongside D. masinii. It is now clear that D. freudenthali is very close to the hypothetical ancestor of all other Gargano species, except D. masinii. Nonetheless, the oldest fissures of…

On the origin of European sheep as revealed by the diversity of the Balkan breeds and by optimizing population-genetic analysis tools

2020

Background In the Neolithic, domestic sheep migrated into Europe and subsequently spread in westerly and northwesterly directions. Reconstruction of these migrations and subsequent genetic events requires a more detailed characterization of the current phylogeographic differentiation. Results We collected 50 K single nucleotide polymorphism (SNP) profiles of Balkan sheep that are currently found near the major Neolithic point of entry into Europe, and combined these data with published genotypes from southwest-Asian, Mediterranean, central-European and north-European sheep and from Asian and European mouflons. We detected clines, ancestral components and admixture by using variants of commo…

How challenging RADseq data turned out to favor coalescent-based species tree inference. A case study in Aichryson (Crassulaceae)

2022

Analysing multiple genomic regions while incorporating detection and qualification of discordance among regions has become standard for understanding phylogenetic relationships. In plants, which usually have comparatively large genomes, this is feasible by the combination of reduced-representation library (RRL) methods and high-throughput sequencing enabling the cost effective acquisition of genomic data for thousands of loci from hundreds of samples. One popular RRL method is RADseq. A major disadvantage of established RADseq approaches is the rather short fragment and sequencing range, leading to loci of little individual phylogenetic information. This issue hampers the application of coa…

Molecular Structure of a Gypsy Element of Drosophila Subobscura (Gypsyds) Constituting a Degenerate Form of Insect Retroviruses

1996

We have determined the nucleotide sequence of a 7.5 kb full-size gypsy element from Drosophila subobscura strain H-271. Comparative analyses were carried out on the sequence and molecular structure of gypsy elements of D.subobscura (gypsyDs), D.melanogaster (gypsyDm) and D.virilis (gypsyDv). The three elements show a structure that maintains a common mechanism of expression. ORF1 and ORF2 show typical motifs of gag and pol genes respectively in the three gypsy elements and could encode functional proteins necessary for intracellular expansion. In the three ORF1 proteins an arginine-rich region was found which could constitute a RNA binding motif. The main differences among the gypsy element…

Phylogeny and origin of Jurassic irregular echinoids (Echinodermata: Echinoidea).

2006

27 pages; International audience; A phylogenetic analysis of Jurassic irregular echinoids is realized to explore the origin and early evolution of this important subset of echinoids. The phylogeny is based on 39 characters and considers data from apical system architecture, the corona including tuberculation and spines, Aristotle's lantern, and general test shape. Results corroborate the monophyly of Irregularia, and clarify the phylogenetic interrelationships existing between the main groups of irregular echinoids. Specializations of the Aristotle's lantern, spines, tubercles and phyllodes constitute the apomorphies for different taxa, as for the whole of Irregularia. The phylogenetic sign…

Molecular analysis suggests that recent Citrus tristeza virus outbreaks in Italy were originated by at least two independent introductions

2005

Citrus tristeza virus (CTV) is the causal agent of the most important virus disease of citrus. Numerous CTV isolates differing in biological and molecular characteristics have been reported worldwide. Recently, CTV was detected in Italy in several citrus crops from three separate areas: (1) Cassibile, province of Syracuse; (2) Massafra, province of Taranto; and (3) Belpasso, province of Catania. CTV isolates from Massafra and Cassibile were mild, whereas isolates from Belpasso induced severe symptoms. To study the genetic variation of CTV populations of these areas, 150 samples per area were examined by single strand conformation polymorphism (SSCP) and nucleotide sequence analysis of CTV g…

Sampling and repeatability in the evaluation of hepatitis C virus genetic variability.

2003

Among the experimental techniques available to study the genetic variability of RNA virus populations, the most informative involve reverse transcription (RT), amplification, cloning and sequencing. The effects of several aspects of these techniques on the estimation of genetic variability in a virus population were analysed. Hepatitis C virus populations from four patients were examined. For each patient, ten series of data derived from independent PCR amplifications of a single RT reaction were obtained. The sample size of each data set was 10 sequences (in nine series) and 100 sequences (in one series). An additional data set derived from an independent RT reaction (about 10 sequences) p…