Search results for "Phylogenetics"

showing 10 items of 777 documents

A critical comment on ‘ankyroids’ (Echinodermata, Stylophora)

2001

Abstract A recent cladistic analysis of stylophoran echinoderms performed by Parsley suggested that mitrates are polyphyletic and derived from symmetrical cornutes. Parsley erected the order Ankyroida to include all derived cornutes and mitrates. The present paper addresses several significant problems in the data matrix of Parsley's cladistic analysis. Detailed morphological comparisons of various stylophorans suggest that important homologies have been ignored: cornute zygal crest and mitrate septum, adorals, glossal and digital. Subanals are not homologous in mitrates. Identification of plate homologies shows that similar-looking symmetrical thecal outlines have been acquired independent…

PaleontologyHomalozoaMitrateBiologybiology.organism_classificationCladisticsOriginal dataPaleontologyMonophylySpace and Planetary ScienceEvolutionary biologyPhylogeneticsWestern europePolyphylyGeobios
researchProduct

Early oysters and their supposed Permian ancestors

2005

The origin of oysters is a much debated palaeontological issue. Recent morphological studies indicate that oysters are characterized by a particular ribbing pattern, the so-called antimarginal ribs which are characterized by a proper morphogenetic pattern. Therefore antimarginal ribs can be used as a diagnostic character in phylogeny. The earliest recognized bivalve displaying diagnostic features of oysters (sinistral attachment to the substrate, typical hinge and ligament structure, and antimarginal ribs) is Ostracites cristadifformis Schlotheim, 1820 first appearing in the Anisian of Europe. This common species was later attributed to Enantiostreon and is here transferred to Umbrostrea. S…

PaleontologyLigament structureSinistral and dextralCommon speciesPermianPhylogeneticsPaleontologyZoologyBiologyOceanographyEcology Evolution Behavior and SystematicsEarth-Surface ProcessesPalaeogeography, Palaeoclimatology, Palaeoecology
researchProduct

Tremadocian Stylophoran Echinoderms From The Taebaeksan Basin, Korea.

2006

15 pages; International audience; Abundant isolated elements of cornute and mitrate stylophorans were recovered from the upper Tremadocian Tumugol Formation in the Taebaeksan Basin, Korea. Cornute skeletal elements comprise a diverse assemblage of marginals and brachials of cothurnocystid affinities, suggesting the presence of no fewer than four different species. Mitrate remains include numerous isolated adorals, marginals, and aulacophoral plates with typical peltocystidan morphologies. Two adorals are identified as Anatifopsis sp., while all the others are attributable to A. cocaban. However, the two previously documented peltocystidans of Korea, A. cocaban and A. truncata, are sufficien…

PaleontologyMitrateStructural basinBiologybiology.organism_classificationAffinitiesTremadocianCladisticsPaleontologySister groupGenus[SDV.BID.SPT] Life Sciences [q-bio]/Biodiversity/Systematics Phylogenetics and taxonomy[SDU.STU.PG] Sciences of the Universe [physics]/Earth Sciences/PaleontologyClade[ SDV.BID.SPT ] Life Sciences [q-bio]/Biodiversity/Systematics Phylogenetics and taxonomy[ SDU.STU.PG ] Sciences of the Universe [physics]/Earth Sciences/Paleontology
researchProduct

ABNORMALITIES IN THE LOWER ORDOVICIAN CORNUTE PHYLLOCYSTIS THORAL, 1935 (ECHINODERMATA: STYLOPHORA) FROM MONTAGNE NOIRE (SOUTHERN FRANCE): IMPLICATIO…

2007

9 pages; International audience; Two specimens of the cornute Phyllocystis crassimarginata Thoral, 1935 from the Lower Ordovician of Southern Montagne Noire (Languedoc, France) showing abnormal numbers of marginal plates are described. The first one (UM 310) is characterized by the insertion of one extra plate between the fourth right marginal and the zygal plate Z. Comparison with a new, undescribed Tremadoc boot-shaped cornute suggests that 1) the extra plate of UM 310 is equivalent to M4, and 2) the three right marginals located between M1 and Z in ‘‘normal'' specimens of Phyllocystis can be identified as M2, Mc, and M3. Plate configurations of the right thecal margin are thus identical …

PaleontologyPhylogeneticsLower ordovicianPaleontology[SDU.STU.PG] Sciences of the Universe [physics]/Earth Sciences/PaleontologyAnatomyBiologyHomology (biology)[ SDU.STU.PG ] Sciences of the Universe [physics]/Earth Sciences/PaleontologyJournal of Paleontology
researchProduct

Les ammonites du Pliensbachien et du Toarcien basal dans la carrière de la Roche Blain (Fresnay-le-Puceux, Calvados, Basse-Normandie, France). Taxono…

2008

65 pages; International audience; Résumé Ce travail étudie les riches faunes d'ammonites du Pliensbachien et de la base du Toarcien dans la localité très fossilifère de la carrière de la Roche Blain (Calvados). Une cinquantaine d'espèces pliensbachiennes, récoltées dans une douzaine de niveaux distincts sont toutes décrites et illustrées. Leur préservation est parfois remarquable. Des structures fragiles comme les péristomes ou les mégastries sont assez souvent préservées. A l'exception de deux spécimens d'affinités téthysiennes (Arieticeras cf. amalthei (Oppel, 1853) et Dactylioceras (Eodactylites) sp.), les ammonites récoltées à la Roche Blain se rattachent toutes, sans ambiguïté, aux fau…

PaléobiodiversitéPaléobiodiversité.Systématique[ SDU.STU.ST ] Sciences of the Universe [physics]/Earth Sciences/StratigraphyPliensbachien[SDV.BID.SPT]Life Sciences [q-bio]/Biodiversity/Systematics Phylogenetics and taxonomyNormandieBiostratigraphieAmmonites[SDU.STU.ST]Sciences of the Universe [physics]/Earth Sciences/Stratigraphy[SDV.BID.SPT] Life Sciences [q-bio]/Biodiversity/Systematics Phylogenetics and taxonomy[SDU.STU.ST] Sciences of the Universe [physics]/Earth Sciences/Stratigraphy[SDU.STU.PG] Sciences of the Universe [physics]/Earth Sciences/PaleontologyToarcien basalBassin anglo-parisien[SDU.STU.PG]Sciences of the Universe [physics]/Earth Sciences/Paleontology[ SDV.BID.SPT ] Life Sciences [q-bio]/Biodiversity/Systematics Phylogenetics and taxonomy[ SDU.STU.PG ] Sciences of the Universe [physics]/Earth Sciences/PaleontologyPaléobiogéographie
researchProduct

Paraphyly of the Blue Tit (Parus caeruleus) suggested from cytochrome b sequences

2002

The phylogenetic relationships of the Blue Tit-Azure Tit assemblage (genus Parus; Aves: Passeriformes) were studied using mitochondrial DNA sequences of 24 specimens representing seven subspecies from Eurasia and North Africa. Previous work based on comparative morphological and acoustic data suggested a division of the Blue Tit (Parus caeruleus) into two species. Our analyses clearly indicate that the Blue Tit represents a paraphyletic assemblage, including a European/Middle Asian clade that is the sister group to the Azure Tit (Parus cyanus) and a North African clade. The North African clade (teneriffae subspecies group) is a sister group to the European Blue Tit/Azure Tit clade. We sugge…

ParaphylyAsiaZoologySubspeciesBiologyDNA MitochondrialBirdsAfrica NorthernGeneticsAnimalsCladeMolecular BiologyPhylogenyEcology Evolution Behavior and SystematicsParusLikelihood FunctionsPhylogenetic treeCytochrome bEcologyGenetic VariationCytochrome b Groupbiology.organism_classificationEuropeHaplotypesSister groupMutationMolecular phylogeneticsMolecular Phylogenetics and Evolution
researchProduct

Molecular phylogeny of Old World swifts (Aves: Apodiformes, Apodidae, Apus and Tachymarptis) based on mitochondrial and nuclear markers.

2011

We provide a molecular phylogeny for Old World swifts of genera Apus and Tachymarptis (tribe Apodini) based on a taxon-complete sampling at the species level. Phylogenetic reconstructions were based on two mitochondrial (cytochrome b, 12S rRNA) and three nuclear markers (introns of fibrinogen and glyceraldehyde 3-phosphate dehydrogenase plus anonymous marker 12884) while the myoglobin intron 2 did not show any intergeneric variation or phylogenetic signal among the target taxa at all. In contrast to previous hypotheses, the two genera Apus and Tachymarptis were shown as reciprocally monophyletic in all reconstructions. Apus was consistently divided into three major clades: (1) East Asian cl…

ParaphylyGenetic Markersfood.ingredientApodiformesLineage (evolution)ZoologyAvian ProteinsBirdsMonophylyfoodApusGeneticsAnimalsTachymarptisCladeMolecular BiologyEcology Evolution Behavior and SystematicsPhylogenyCell NucleusLikelihood FunctionsbiologyModels GeneticBayes TheoremCytochromes bbiology.organism_classificationMitochondriaRNA RibosomalMolecular phylogeneticsMultilocus Sequence TypingMolecular phylogenetics and evolution
researchProduct

Independent host switching events by digenean parasites of cetaceans inferred from ribosomal DNA

2015

Cetaceans harbour a unique fauna of digeneans whose origin and relationships have sparked considerable debate during recent decades. Disparity in the species reported indicates that they do not share close affinities, but their unusual morphology has made their taxonomic identities and phylogenetic positions uncertain. Here we use sequence data to investigate the phylogenetic relationships of the main species of flukes infecting cetaceans. We sequenced the 18S, 28S and internal transcribed spacer 2 rDNA of digenean species representing all known families reported from cetaceans: Braunina cordiformis (Brauninidae), Ogmogaster antarcticus (Notocotylidae), Pholeter gastrophilus (Heterophyidae)…

ParaphylyMolecular Sequence DataZoologyHeterophyidaeDNA RibosomalDigeneaDNA Ribosomal SpacerRNA Ribosomal 28SRNA Ribosomal 18SAnimalsCluster AnalysisCladePhylogenybiologyPhylogenetic treeBiodiversitySequence Analysis DNADNA Helminthbiology.organism_classificationOpisthorchiidaeInfectious DiseasesMolecular phylogeneticsParasitologyTaxonomy (biology)CetaceaTrematodaInternational Journal for Parasitology
researchProduct

2014

The taxon Syndermata comprises the biologically interesting wheel animals (“Rotifera”: Bdelloidea + Monogononta + Seisonidea) and thorny-headed worms (Acanthocephala), and is central for testing superordinate phylogenetic hypotheses (Platyzoa, Gnathifera) in the metazoan tree of life. Recent analyses of syndermatan phylogeny suggested paraphyly of Eurotatoria (free-living bdelloids and monogononts) with respect to endoparasitic acanthocephalans. Data of epizoic seisonids, however, were absent, which may have affected the branching order within the syndermatan clade. Moreover, the position of Seisonidea within Syndermata should help in understanding the evolution of acanthocephalan endoparas…

ParaphylyMonophylyMultidisciplinarybiologySister groupPhylogeneticsGnathiferaZoologyBdelloideabiology.organism_classificationAcanthocephalaPlatyzoaPLOS ONE
researchProduct

Molecular phylogeny of hyperoliid treefrogs: biogeographic origin of Malagasy and Seychellean taxa and re-analysis of familial paraphyly

2003

Treefrogs of the family Hyperoliidae are distributed in Africa, Madagascar and the Seychelles. In this study, their phylogeny was studied using sequences of fragments of the mitochondrial 16Sand 12SrRNA and cytochrome b genes. The molecular data strongly confirmed monophyly of the subfamily Hyperoliinae but indicated that the genus Leptopelis (subfamily Leptopelinae) is more closely related to species of the African family Astylosternidae. The Seychellean genus Tachycnemis was the sister group of the Malagasy Heterixalus in all molecular analyses; this clade was deeply nested within the Hyperoliinae. A re-evaluation of the morphological data did not contradict the sister group relationships…

ParaphylySubfamilybiologyHyperoliidaeZoologyHeterixalusbiology.organism_classificationMonophylySister groupMolecular phylogeneticsGeneticsAnimal Science and ZoologyLeptopelisMolecular BiologyEcology Evolution Behavior and SystematicsJournal of Zoological Systematics and Evolutionary Research
researchProduct