Search results for "Pool"
showing 10 items of 238 documents
Effect of population structure and migration when investigating genetic continuity using ancient DNA
2016
AbstractRecent advances in sequencing techniques provide means to access direct genetic snapshots from the past with ancient DNA data (aDNA) from diverse periods of human prehistory. Comparing samples taken in the same region but at different time periods may indicate if there is continuity in the peopling history of that area or if a large genetic input, such as an immigration wave, has occurred. Here we propose a new modeling approach for investigating population continuity using aDNA, including two fundamental elements in human evolution that were absent from previous methods: population structure and migration. The method also considers the extensive temporal and geographic heterogeneit…
Genetic diversity and relationships among Italian and foreign almond germplasm as revealed by microsatellite markers
2013
Abstract Italian germplasm is characterized by a wide diversity rapidly developed determining a massive genetic pool of cultivars in several growing areas. On the whole, regions of southern Italy, and in particular Sicily, were considered as one of the main trade routes along which almond was spread throughout the shores of the Mediterranean Sea. In this work, 9 SSR markers have been used to analyze 113 almond cultivars and accessions coming from ex-situ conservation, including most of almond genotypes spread in Sicily and Apulia and foreign cultivars from Mediterranean, American and Australian areas in order to determine the level of genetic diversity within Italian genotypes and elucidate…
Analysis of S-allele genetic diversity in Sicilian almond germplasm comparing different molecular methods
2015
Italian almond germplasm is characterized by a wide diversity in several growing areas among which Sicily is one of the most important. Analysis with consensus and specific primers and DNA sequencing was performed to investigate S-RNase genetic diversity and to elucidate the homology rate within a genetic pool of 27 Italian accessions. Interestingly, some of the self-compatible cultivars did not show the presence of Sf allele. Amplicons from consensus and allele-specific PCR primers revealed a high level of variability. Sequencing of all the S-RNase amplicons derived from consensus primers allowed the identification of two new S-RNase alleles (S51 and S52). Surprisingly, despite the AA repl…
Molecular and morphological diversity of on-farm hazelnut (Corylus avellana L.) landraces from southern Europe and their role in the origin and diffu…
2013
Hazelnut (Corylus avellana L.) is a traditional nut crop in southern Europe. Germplasm exploration conducted on-farm in five countries (Portugal, Spain, Italy, Slovenia, and Greece) identified 77 landraces. The present work describes phenotypic variation in nut and husk traits and investigates genetic relationships using ten simple sequence repeat (SSR) markers among these landraces, 57 well-known references cultivars, and 19 wild accessions. Among the 77 landraces, 42 had unique fingerprints while 35 showed a SSR profile identical to a known cultivar. Among the 42 unique landraces, morphological observations revealed high phenotypic diversity, and some had characteristics appreciated by th…
Palaeogenomics of Upper Palaeolithic to Neolithic European hunter-gatherers
2023
Acknowledgements: The authors thank G. Marciani and O. Jöris for comments on archaeology; C. Jeong, M. Spyrou and K. Prüfer for comments on genetics; M. O’Reilly for graphical support for Fig. 5 and Extended Data Fig. 9; the entire IT and laboratory teams at the Department of Archaeogenetics of MPI-SHH for technical assistance; M. Meyer and S. Nagel for support with single-stranded library preparation; K. Post, P. van Es, J. Glimmerveen, M. Medendorp, M. Sier, S. Dikstra, M. Dikstra, R. van Eerden, D. Duineveld and A. Hoekman for providing access to human specimens from the North Sea (The Netherlands); M. D. Garralda and A. Estalrrich for providing access to human specimens from La Riera (S…
Analysis of rill step–pool morphology and its comparison with stream case
2021
In this paper, the morphology of step–pool features is analysed using rill measurements and literature data for streams. Close-range photogrammetry was used to carry out ground measurements on rills with step–pool units, shaped on a plot having slope equal to 14, 15, 22, 24 and 26%. Data were used to compare the relationships between H/L, in which H is the step height and L is the step length, and the mean gradient of the step–pool sequence, Sm, for streams or the slope of the step–pool unit, S, for rills. The relationship of H/L against Sm is widely used to test the occurrence of the maximum flow resistance condition in streams, which is associated with the range 1 ≤ (H/L)/Sm ≤ 2. Further …
The role of vegetation on gully erosion stabilization at a severely degraded landscape: A case study from Calhoun Experimental Critical Zone Observat…
2018
Abstract Gully erosion was evidence of land degradation in the southern Piedmont, site of the Calhoun Critical Zone Observatory (CCZO), during the cotton farming era. Understanding of the underlying gully erosion processes is essential to develop gully erosion models that could be useful in assessing the effectiveness of remedial and soil erosion control measures such as gully backfilling, revegetation, and terracing. Development and validation of process-based gully erosion models is difficult because observations of the formation and progression of gullies are limited. In this study, analytic formulations of the two dominant gullying processes, namely, plunge pool erosion and slab failure…
Distribution of soil organic carbon in Wadi Al-Thulaima, Saudi Arabia: A hyper-arid habitat altered by wastewater reuse
2018
The carbon cycle is being altered as a result of human-induced changes in the Earth's system. Therefore, ecosystems such as wetlands, authentic CO2 sinks, are becoming especially important. Little information exits on the soil organic carbon (SOC) stock for the middle east-countries man-made wetlands making wadis permanent with the outflow of wastewater treatment plants. This paper presents the vertical distribution of SOC content, soil bulk density (SBD) and SOC density in soil of vegetated and bare sites in Wadi Al-Thulaima, one of the artificial wetlands in central Saudi Arabia. The mean distribution of SBD in the vegetated and bare sites increased significantly with depth. Inversely, th…
Optimized search strategy for detecting scientifically strong studies on treatment through PubMed.
2011
OBJECTIVE: To develop optimal MEDLINE search strategies for retrieving sound clinical studies of the etiology, prognosis, diagnosis, prevention, or treatment of disorders in adult general medicine. DESIGN: Analytic survey of operating characteristics of search strategies developed by computerized combinations of terms selected to detect studies meeting basic methodologic criteria for direct clinical use in adult general medicine. MEASURES: The sensitivities, specificities, precision, and accuracy of 134,264 unique combinations of search terms were determined by comparison with a manual review of all articles (the "gold standard") in ten internal medicine and general medicine journals for 19…
Agencification of the European Union Administration: Connecting the Dots
2016
This review paper, with a clear political science and public administration bias, takes stock of the existing literature on EU agencies and suggests a future research agenda in this area. We review studies on EU agencies’ organization, tasks, proliferation and location in the political-administrative space. Whether the advent of EU agencies tends to underpin a basically intergovernmental, transnational or supranational order is a major topic with potentially huge consequences for the distribution of power across levels of government, for the degree of policy uniformity and pooling of administrative resources across countries, for the role of genuinely European perspectives in the policy pro…