Search results for "Probability."
showing 10 items of 3396 documents
Using latent variable models to identify large networks of species‐to‐species associations at different spatial scales
2015
Summary We present a hierarchical latent variable model that partitions variation in species occurrences and co-occurrences simultaneously at multiple spatial scales. We illustrate how the parameterized model can be used to predict the occurrences of a species by using as predictors not only the environmental covariates, but also the occurrences of all other species, at all spatial scales. We leverage recent progress in Bayesian latent variable models to implement a computationally effective algorithm that enables one to consider large communities and extensive sampling schemes. We exemplify the framework with a community of 98 fungal species sampled in c. 22 500 dead wood units in 230 plot…
A hierarchical Bayesian Beta regression approach to study the effects of geographical genetic structure and spatial autocorrelation on species distri…
2019
Global climate change (GCC) may be causing distribution range shifts in many organisms worldwide. Multiple efforts are currently focused on the development of models to better predict distribution range shifts due to GCC. We addressed this issue by including intraspecific genetic structure and spatial autocorrelation (SAC) of data in distribution range models. Both factors reflect the joint effect of ecoevolutionary processes on the geographical heterogeneity of populations. We used a collection of 301 georeferenced accessions of the annual plant Arabidopsis thaliana in its Iberian Peninsula range, where the species shows strong geographical genetic structure. We developed spatial and nonsp…
Whole genome sequencing data and de novo draft assemblies for 66 teleost species
2017
Teleost fishes comprise more than half of all vertebrate species, yet genomic data are only available for 0.2% of their diversity. Here, we present whole genome sequencing data for 66 new species of teleosts, vastly expanding the availability of genomic data for this important vertebrate group. We report on de novo assemblies based on low-coverage (9–39×) sequencing and present detailed methodology for all analyses. To facilitate further utilization of this data set, we present statistical analyses of the gene space completeness and verify the expected phylogenetic position of the sequenced genomes in a large mitogenomic context. We further present a nuclear marker set used for phylogenetic…
Energy intake functions and energy budgets of ectotherms and endotherms derived from their ontogenetic growth in body mass and timing of sexual matur…
2017
Abstract Ectothermic and endothermic vertebrates differ not only in their source of body temperature (environment vs. metabolism), but also in growth patterns, in timing of sexual maturation within life, and energy intake functions. Here, we present a mathematical model applicable to ectothermic and endothermic vertebrates. It is designed to test whether differences in the timing of sexual maturation within an animal's life (age at which sexual maturity is reached vs. longevity) together with its ontogenetic gain in body mass (growth curve) can predict the energy intake throughout the animal's life (food intake curve) and can explain differences in energy partitioning (between growth, repro…
Maternal effects and the stability of population dynamics in noisy environments
2001
Summary 1. It is widely appreciated that complex population dynamics are more likely in systems where there is a lag in the density dependence. The transmission of maternal environmental conditions to offspring phenotype is a potential cause of such a lag. Maternal effects are increasingly found to be common in a wide range of organisms, and might thus be a frequent cause of nonequilibrium population dynamics. 2. We show that a maternal effects’ lag generally increases population variability. This may result from the lag inducing cycles (or more complex dynamics) in a deterministic environment or, in a stochastic environment, from the lag interacting with environmental noise to produce more…
Environmental and ontogenetic constraints on developmental stability in the spatangoid sea urchin Echinocardium (Echinoidea)
2006
Biogeosciences, UMR-CNRS 5561, Universite de Bourgogne, 6 bd Gabriel, 21000 Dijon, FranceReceived 25 June 2004; accepted for publication 25 July 2005Spatangoid irregular sea urchins are detritivorous benthic organisms particularly prone to variations of environ-ment, and their mode of growth and plate morphology make them an appropriate model to assess the effects of envi-ronmental variations. Two populations of Echinocardium flavescens were sampled in two sites of the Norwegiancoast characterized by contrasted environmental conditions. Different morphological descriptors (plate areas, inter-landmarks distances, overall size, and shape of the posterior ambulacra) were used to appraise interi…
Shape, size, and quantity of ingested external abrasives influence dental microwear texture formation in guinea pigs
2020
Food processing wears down teeth, thus affecting tooth functionality and evolutionary success. Other than intrinsic silica phytoliths, extrinsic mineral dust/grit adhering to plants causes tooth wear in mammalian herbivores. Dental microwear texture analysis (DMTA) is widely applied to infer diet from microscopic dental wear traces. The relationship between external abrasives and dental microwear texture (DMT) formation remains elusive. Feeding experiments with sheep have shown negligible effects of dust-laden grass and browse, suggesting that intrinsic properties of plants are more important. Here, we explore the effect of clay- to sand-sized mineral abrasives (quartz, volcanic ash, loess,…
Conservation of the Grey Bush Cricket Platycleis albopunctata (Orthoptera: Tettigoniidae) Under Differing Habitat Conditions: Implications From an In…
2009
Assessing the chance of survival of any species is a great challenge in conservation biology. In this chapter, we analyse the vulnerability of the grey bush cricket Platycleis albopunctata in habitats of different food availability under current and increased temperature conditions applying an individual-based model. Our simulations show that populations in warmer habitats with a higher food limitation have a much lower extinction risk than those living in habitats that are less food-limited and colder. An increase in mortalities of life stages severely increases the risk of population extinction, whereas a shift in the termination of egg diapause towards the beginning of the year caused by…
The Bias of combining variables on fish's aggressive behavior studies.
2019
Made available in DSpace on 2019-10-06T16:27:42Z (GMT). No. of bitstreams: 0 Previous issue date: 2019-07-01 Quantifying animal aggressive behavior by behavioral units, either displays or attacks, is a common practice in animal behavior studies. However, this practice can generate a bias in data analysis, especially when the variables have different temporal patterns. This study aims to use Bayesian Hierarchical Linear Models (B-HLMs) to analyze the feasibility of pooling the aggressive behavior variables of four cichlids species. Additionally, this paper discusses the feasibility of combining variables by examining the usage of different sample sizes and family distributions to aggressive …
Data synergy between leaf area index and clumping index Earth Observation products using photon recollision probability theory
2018
International audience; Clumping index (CI) is a measure of foliage aggregation relative to a random distribution of leaves in space. The CI can help with estimating fractions of sunlit and shaded leaves for a given leaf area index (LAI) value. Both the CI and LAI can be obtained from global Earth Observation data from sensors such as the Moderate Resolution Imaging Spectrometer (MODIS). Here, the synergy between a MODIS-based CI and a MODIS LAI product is examined using the theory of spectral invariants, also referred to as photon recollision probability ('p-theory'), along with raw LAI-2000/2200 Plant Canopy Analyzer data from 75 sites distributed across a range of plant functional types.…