Search results for "Proteobacteria"

Stimulation of sewage sludge treatment by carbon sources and bioaugmentation with a sludge-derived microbial consortium

2021

Abstract Recently, sewage sludge (SS) disposal has become one of the greatest global challenges. In this study, we aimed to evaluate the effect of faba bean straw (Straw-B), wheat straw (Straw-W), and wood-chip pellets (WCP) amended to SS, as well as bioaugmentation (BA), on the physicochemical characteristics and structure of the microbial community of the treated SS. Sixteen days of incubation of SS-containing mixtures revealed the highest efficiency of Straw-W(BA) in terms of SS stabilisation, i.e., the highest and most stable respiration intensity, the lowest ammonia emission, and the highest stimulation effect on the cress seedling growth. Shotgun sequencing data analysis showed that P…

On Caretta caretta’s shell: first spatial analysis of micro- and macro-epibionts on the Mediterranean loggerhead sea turtle carapace

2021

The loggerhead sea turtle, Caretta caretta (Linnaeus, 1758), is the most common sea turtle species in the Mediterranean Sea, where it can experience severe anthropogenic impacts. Although C. caretta is known to host more than 200 epibiotic taxa (crustaceans, algae and cyanobacteria), no reports have included a detailed evaluation of the microbial community of its carapace scutes. Thus, this study aimed to determine the diversity and composition of the visible and invisible communities on the carapace scutes of wild loggerhead turtles from the Aeolian Archipelago (Southern Tyrrhenian Sea, Italy) by using a combined approach of morphological/spatial examination and molecular analyses. Altoget…

Fully aerobic bioscrubber for the desulfurization of H2S-rich biogas

2019

Abstract A fully aerobic bioscrubber for the desulfurization of H2S-rich biogas was developed in the present study by coupling an absorption column and a bubble column bioreactor. The bioscrubber treated H2S loading rates of 37, 59, and 100 g S mliquid−3 h−1 at gas residence times of 6.6, 4.1 and 2.4 min in the absorption column, respectively. Stable H2S removal efficiencies above 80% were recorded at all the conditions tested. The bioscrubber was robust towards short- and long-term operation shutdowns (5 and 18 days), the H2S removal performance being recovered after few hours. The aerated bubble column bioreactor was operated at slightly alkaline conditions (pH 8 ± 0.5), which prevented H…

Wolbachia prevalence and diversity in selected riverine predatory beetles (Bembidiini and Paederini)

2018

Despite the many studies on Wolbachia in Coleoptera, data about the prevalence of this bacterium among ground and rove beetles are missing. This study describes Wolbachia distribution and diversity in predatory beetles co-habiting the same environment - submontane river channels. Three species of Paederini (Staphylinidae) and four Bembidiini (Carabidae) were collected from six river catchments of the Carpathians. Wolbachia was absent in three species: Paederidus rubrothoracicus (Goeze), Bembidion decorum (Zenker in Panzer), Bembidion modestum (F.) - but detected in four others. Paederus limnophilus Erichson and Paederidus ruficollis F. were infected at only some sites by different strains o…

Hydrolysis and microbial community analyses in two-stage anaerobic digestion of energy crops

2007

Aims: The roles of the diverse populations of micro-organisms responsible for biodegradation of organic matter to form methane and carbon dioxide are rudimentarily understood. To expand the knowledge on links between microbial communities and the rate limiting, hydrolytic stage of two-stage biogas production from energy crops, this study was performed. Methods and Results: The process performance. and microbial communities (as determined by fluorescence in situ hybridization) in two separate two-stage batch digestions of sugar beets and grass/clover were studied. The microbial populations developed in the hydrolytic stage of anaerobic digestion of beets and grass/clover showed very few simi…

2019

Although sediments of small boreal humic lakes are important carbon stores and greenhouse gas sources, the composition and structuring mechanisms of their microbial communities have remained understudied. We analyzed the vertical profiles of microbial biomass indicators (PLFAs, DNA and RNA) and the bacterial and archaeal community composition (sequencing of 16S rRNA gene amplicons and qPCR of mcrA) in sediment cores collected from a typical small boreal lake. While microbial biomass decreased with sediment depth, viable microbes (RNA and PLFA) were present all through the profiles. The vertical stratification patterns of the bacterial and archaeal communities resembled those in marine sedim…

Intertidal epilithic bacteria diversity changes along a naturally occurring carbon dioxide and pH gradient.

2014

Intertidal epilithic bacteria communities are important components of coastal ecosystems, yet few studies have assessed their diversity and how it may be affected by changing environmental parameters. Submarine CO2 seeps produce localised areas of CO2-enriched seawater with reduced pH levels. We utilised the seawater pH/CO2 gradient at Levante Bay (Italy) to test the hypothesis that epilithic bacteria communities are modified by exposure to seawater with the varying chemical parameters. Biofilms were sampled from three sites exposed to seawater with different pH/CO2 levels and diversity determined using high-throughput sequencing of 16S rRNA genes. Seawater pCO2 concentrations were increase…

Subcellular localization of pentachlorophenol 4-monooxygenase in Sphingobium chlorophenolicum ATCC 39723.

2002

Abstract We have studied the subcellular localization of pentachlorophenol 4-monooxygenase (PCP4MO) in Sphingobium chlorophenolicum ATCC 39723 during induction by pentachlorophenol (PCP). Using a monoclonal antibody CL6 specific to the native and recombinant PCP4MO, the enzyme was primarily found soluble as determined by immunoblot and ELISA analyses of cellular fractions. However, the enzyme was observed both in the soluble and membrane-bound forms during induction for 2–4 h, suggesting its translocation out from the cytoplasm. Electron microscopy confirmed that PCP4MO was predominantly present in the cytoplasm at 1 h, whereas at 4 h significant amount was detected also in the membrane and…

The effects of ibuprofen on activated sludge: Shift in bacterial community structure and resistance to ciprofloxacin

2017

Abstract Ibuprofen (IBP) is ranked at the 4th place among 57 pharmaceutical compounds according to the number of citations in prioritization documents. The response of microbial community of activated sludge to IBP was studied at the concentrations of 50–5000 mg/L. Batch incubation was performed in an OxiTop® device for 21 days. The reduction of biological oxygen demand depended on the IBP concentration and varied in the range from 321 to 107 mg O 2 /L. Massive DNA sequencing analysis of the activated sludge revealed that Proteobacteria became more dominant when grown in the presence of IBP. Microbial diversity was reduced in the presence of 500–1000 mg/L IBP, but increased again in the pre…

Taxonomic and functional diversity of atrazine‐degrading bacterial communities enriched from agrochemical factory soil

2010

Aims: To characterize atrazine-degrading potential of bacterial communities enriched from agrochemical factory soil by analysing diversity and organization of catabolic genes. Methods and Results: The bacterial communities enriched from three different sites of varying atrazine contamination mineralized 65–80% of 14C ring-labelled atrazine. The presence of trzN-atzBC-trzD, trzN-atzABC-trzD and trzN-atzABCDEF-trzD gene combinations was determined by PCR. In all enriched communities, trzN-atzBC genes were located on a 165-kb plasmid, while atzBC or atzC genes were located on separated plasmids. Quantitative PCR revealed that catabolic genes were present in up to 4% of the community. Restricti…