Search results for "QR"

showing 10 items of 591 documents

Geographical separation and physiology drive differentiation of microbial communities of two discrete populations of the bat Leptonycteris yerbabuenae

2020

In this paper, we explore how two discrete and geographically separated populations of the lesser long‐nosed bat (Leptonycteris yerbabuenae)—one in central and the other in the Pacific region of Mexico—differ in their fecal microbiota composition. Considering the microbiota–host as a unity, in which extrinsic (as food availability and geography) or intrinsic factors (as physiology) play an important role in the microbiota composition, we would expect differentiation in the microbiota of two geographically separated populations. The Amplicon Sequences Variants (ASVs) of the V4 region of the 16s rRNA gene from 68 individuals were analyzed using alpha and beta diversity metrics. We obtained a …

DNA BacterialBeta diversitylcsh:QR1-502PhysiologyMicrobiologylcsh:MicrobiologyFecesgeographical separationPollinatorPregnancyChiropteraRNA Ribosomal 16Sreproductive stagesAnimalsLactationLeptonycterisMicrobiomeRelative species abundanceMexicoholobiontbiologyBacteriaGeographyGenetic VariationHigh-Throughput Nucleotide SequencingOriginal Articlesbiology.organism_classificationpopulationsGastrointestinal MicrobiomeHolobiontUniFracSocial IsolationAlpha diversityFemaleOriginal ArticleMicrobiologyOpen
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Spatial and temporal dynamics of bacterioplankton community composition in a subtropical dammed karst river of southwestern China.

2018

Abstract River damming influences the hydro‐physicochemical variations in karst water; however, such disruption in bacterioplankton communities has seldom been studied. Here, three sampling sites (city‐river section, reservoir area, and outflow area) of the Ca2+–Mg2+–HCO 3 −–SO 4 2− water type in the dammed Liu River were selected to investigate the bacterioplankton community composition as identified by high‐throughput 16S rRNA gene sequencing. In the dammed Liu River, thermal regimes have been altered, which has resulted in considerable spatial‐temporal differences in total dissolved solids (TDSs), oxidation‐reduction potential (Eh), dissolved oxygen (DO), and pH and in a different microe…

DNA BacterialChinaBiodiversitylcsh:QR1-502MicrobiologyDNA Ribosomallcsh:MicrobiologyActinobacteriaSpatio-Temporal AnalysisRiversRNA Ribosomal 16Shydro‐physicochemical variabilitybacterioplankton communityCluster AnalysisMagnesium16S rRNANitrogen cyclePhylogenygeographygeography.geographical_feature_categorybiologyBacteriaEcologySulfatesMicrobiotaBacteroidetesBacterioplanktonSequence Analysis DNAOriginal ArticlesHydrogen-Ion Concentrationbiology.organism_classificationKarstPlanktonOxygenBicarbonatesEnvironmental scienceCalciumOriginal ArticleProchlorococcusProteobacteriadammed karst riverMicrobiologyOpen
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Environmental distribution of prokaryotic taxa

2010

14 pages, 5 figures, 1 table, 10 additional files avalaible [http://www.biomedcentral.com/content/supplementary/1471-2180-10- 85-S10.PDF ]

DNA BacterialMicrobiology (medical)BacteriaEcologybusiness.industrylcsh:QR1-502BiodiversityDistribution (economics)Bayes TheoremBiodiversityBiologyGeneralist and specialist speciesArchaeaMicrobiologylcsh:MicrobiologyTaxonFresh waterGenes BacterialRNA Ribosomal 16SResearch articleDatabases GeneticEnvironmental MicrobiologyPoisson DistributionbusinessBMC Microbiology
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Diversity and distribution of marine heterotrophic bacteria from a large culture collection

2020

16 pages, 5 figures, 3 tables, supplementary information https://doi.org/10.1186/s12866-020-01884-7

DNA BacterialMicrobiology (medical)Deep oceanMesopelagic zonelcsh:QR1-502Bacterial isolates; Deep ocean; Photic ocean; DiversityDNA RibosomalMicrobiologyDeep sealcsh:MicrobiologyBathyal zone03 medical and health sciencesMarine bacteriophageRNA Ribosomal 16SGammaproteobacteriaMediterranean SeaPhotic zone14. Life underwaterAtlantic OceanIndian OceanPhotic oceanPhylogeny030304 developmental biology0303 health sciencesDiversityPacific OceanBacteriabiologyArctic Regions030306 microbiologyEcologyAlphaproteobacteriaHeterotrophic ProcessesSequence Analysis DNAbiology.organism_classificationPhylogeography13. Climate actionAphotic zoneBacterial isolatesWater MicrobiologyResearch Article
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Comparison of two PCR methods for detection of Leptospira interrogans in formalin-fixed and paraffin-embedded tissues

2012

In this study we compared two polymerase chain reaction (PCR) methods using either 16S ribosomal RNA (rRNA) or 23S rRNA gene primers for the detection of different Leptospira interrogans serovars. The performance of these two methods was assessed using DNA extracted from bovine tissues previously inoculated with several bacterial suspensions. PCR was performed on the same tissues before and after the formalin-fixed, paraffin-embedding procedure (FFPE tissues). The 23S rDNA PCR detected all fresh and FFPE positive tissues while the 16S rDNA-based protocol detected primarily the positive fresh tissues. Both methods are specific for pathogenic L. interrogans. The 23S-based PCR method successfu…

DNA BacterialMicrobiology (medical)Serotypelcsh:Arctic medicine. Tropical medicineTissue Fixationlcsh:RC955-962lcsh:QR1-502KidneySettore BIO/19 - Microbiologia GeneralePolymerase Chain Reactionlcsh:Microbiologylaw.invention23S ribosomal RNAlawLeptospiraFormaldehydeRNA Ribosomal 16SmedicinediagnosticsAnimalsFFPE tissueLungPolymerase chain reactionLeptospiraParaffin EmbeddingbiologymicrobiologyRibosomal RNAbiology.organism_classification16S ribosomal RNAmedicine.diseaseLeptospirosisMolecular biologyRNA Ribosomal 23SPCRCattleLeptospira interrogansLeptospira interrogans
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Sequence diversity in the pe_pgrs genes of Mycobacterium tuberculosis is independent of human T cell recognition.

2014

ABSTRACT The Mycobacterium tuberculosis genome includes the large family of pe_pgrs genes, whose functions are unknown. Because of precedents in other pathogens in which gene families showing high sequence variation are involved in antigenic variation, a similar role has been proposed for the pe_pgrs genes. However, the impact of immune selection on pe_pgrs genes has not been examined. Here, we sequenced 27 pe_pgrs genes in 94 clinical strains from five phylogenetic lineages of the M. tuberculosis complex (MTBC). We found that pe_pgrs genes were overall more diverse than the remainder of the MTBC genome, but individual members of the family varied widely in their nucleotide diversity and in…

DNA BacterialNonsynonymous substitutionGenotypeSequence analysisT-Lymphocytes1.1 Normal biological development and functioningMolecular Sequence DataEpitopes T-LymphocyteBiologyGenomeMicrobiologyEpitopeMycobacterium tuberculosisEpitopesRare DiseasesBacterial ProteinsINDEL MutationGeneticUnderpinning researchVirologyAntigenic variationGeneticsGene familyHumansTuberculosis2.1 Biological and endogenous factorsSelection GeneticAntigensAetiologyGeneSelectionGeneticsAntigens BacterialHuman GenomeBacterialMembrane ProteinsComputational BiologyGenetic VariationSequence Analysis DNAMycobacterium tuberculosisDNAbiology.organism_classificationQR1-5023. Good healthInfectious DiseasesGood Health and Well BeingT-LymphocyteSequence AnalysisResearch ArticlemBio
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Palešu marķēšanas tiešsaistes sistēma

2017

Palešu marķēšanas tiešsaistes sistēma ir tīmekļa vietne, kura tika izstrādāta SIA “POLIPAKS” vajadzībām. Sistēmas pamatfunkcijas ir pēc lietotāja sniegtās informācijas automātiski ģenerēt marķēšanas etiķetes ar QR un svītru kodiem, kuras pēc tam tiek stiprinātas pie sūtāmajām paletēm un kastēm. Kvalifikācijas darba izstrādātājs strādāja pie pilnas šīs sistēmas funkcionālās izstrādes. Attiecīgās sadaļas nodrošina iespēju ģenerēt etiķetes gan priekš paletēm, gan priekš kastēm, tāpat arī būs iespēja katras dienas beigās lietotāja izdrukāt manifestu par attiecīgo dienu. Tāpat arī būs iespēja kontrolēt uzņēmuma darbinieku pieejas tiesības sistēmai.

DatorzinātneSvītru kodsSistēmaQR KodsPalešu marķēšana
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Tree automata, tree decomposition and hyperedge replacement

2005

Recent results concerning efficient solvability of graph problems on graphs with bounded tree-width and decidability of graph properties for hyperedge-replacement graph grammars are systematised by showing how they can be derived from recognisability of corresponding tree classes by finite tree automata, using only well-known techniques from tree-automata theory.

Discrete mathematicsSPQR treeSpanning treeK-ary treeComputer scienceTree decompositionCombinatoricsTheoryofComputation_MATHEMATICALLOGICANDFORMALLANGUAGESTree structureGomory–Hu treeTree automatonGraph propertyComputer Science::Formal Languages and Automata TheoryMathematicsofComputing_DISCRETEMATHEMATICS
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Heterogeneity in the Response of Different Subtypes of Drosophila melanogaster Midgut Cells to Viral Infections

2021

This article belongs to the Section Viral Immunology, Vaccines, and Antivirals.

Drosophila virusesSingle-cell genomicsvirusesVirus-host interactionMicrobiologyViruscell-type-specific gene expressionTranscriptomeVirologyMelanogasterHeat shockGeneSingle-cell RNA-seqsingle-cell RNA-seqvirus-host interactionbiologydual RNA-seqsingle-cell genomicsRNAbiology.organism_classificationVirologyQR1-502Infectious DiseasesViral replicationantiviral heat shock responseCell-type-specific gene expression<i>Drosophila</i> virusesDrosophila melanogasterDual RNA-seqViruses
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Non-Saccharomyces Yeasts nitrogen source preferences: Impact on sequential fermentation and wine volatile compounds profile

2017

International audience; Nitrogen sources in the must are important for yeast metabolism, growth, and performance, and wine volatile compounds profile. Yeast assimilable nitrogen (YAN) deficiencies in grape must are one of the main causes of stuck and sluggish fermentation. The nitrogen requirement of Saccharomyces cerevisiae metabolism has been described in detail. However, the YAN preferences of non-Saccharomyces yeasts remain unknown despite their increasingly widespread use in winemaking. Furthermore, the impact of nitrogen consumption by non-Saccharomyces yeasts on YAN availability, alcoholic performance and volatile compounds production by S. cerevisiae in sequential fermentation has b…

Effect of nitrogen on plantsaroma compoundsEfecte del nitrògen sobre les plantesSaccharomycetaceaeco-fermentation[ SDV.IDA ] Life Sciences [q-bio]/Food engineeringlcsh:QR1-502Winechardonnay winesnon-Saccharomyces yeastsyeast interactionslcsh:Microbiologysauvignon blancalcoholic fermentationnitrogen sources[SDV.IDA]Life Sciences [q-bio]/Food engineeringamino-acidViSacaromicetàciesvolatile compoundswineassimilable nitrogencerevisiaecatabolite repressiongrape juice
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