Search results for "Quantitative Biology::Cell Behavior"
showing 10 items of 63 documents
Artificial Neural Networks and Linear Discriminant Analysis: A Valuable Combination in the Selection of New Antibacterial Compounds
2004
A set of topological descriptors has been used to discriminate between antibacterial and nonantibacterial drugs. Topological descriptors are simple integers calculated from the molecular structure represented in SMILES format. The methods used for antibacterial activity discrimination were linear discriminant analysis (LDA) and artificial neural networks of a multilayer perceptron (MLP) type. The following plot frequency distribution diagrams were used: a function of the number of drugs within a value interval of the discriminant function and the output value of the neural network versus these values. Pharmacological distribution diagrams (PDD) were used as a visualizing technique for the i…
Fluctuations and elastic properties of lipid membranes in the gel Lβ′ state: a coarse-grained Monte Carlo study
2010
We study the stress distribution profiles and the height and thickness fluctuations of lipid membranes in the gel L-beta ' state by Monte Carlo simulations of a generic coarse-grained model for lipid membranes, which reproduces many known properties of dipalmitoylphosphatidyncholine (DPPC) bilayers. The results are related to the corresponding properties of fluid membranes, and to theoretical predictions for crystalline and hexatic membranes. One striking observation is that the spontaneous curvature of the monolayers changes sign from the fluid to the gel phase. In the gel-phase, the long-wavelength height fluctuations are suppressed, and the fluctuation spectrum is highly anisotropic. In …
Flow properties and hydrodynamic interactions of rigid spherical microswimmers.
2017
We analyze a minimal model for a rigid spherical microswimmer and explore the consequences of its extended surface on the interplay between its self-propulsion and flow properties. The model is the first order representation of microswimmers, such as bacteria and algae, with rigid bodies and flexible propelling appendages. The flow field of such a microswimmer at finite distances significantly differs from that of a point-force (Stokeslet) dipole. For a suspension of microswimmers, we derive the grand mobility matrix that connects the motion of an individual swimmer to the active and passive forces and torques acting on all the swimmers. Our investigation of the mobility tensors reveals tha…
Performance of power control in inter-cell interference coordination for frequency reuse
2010
To mitigate inter-cell interference in 3G evolution systems, a novel inter-cell interference coordination scheme called soft fractional frequency reuse is proposed in this article, which enables to improve the data rate in cell-edge. On this basis, an inter-cell power control is presented for the inter-cell interference coordination, and the inter-cell balanced signal to interference plus noise ratio (SINR) among users is established for power allocation, which enables mitigation of inter-cell interference. Especially, the power control is based on a novel exponential kernel equation at higher convergence speed than the traditional arithmetic kernel equations. Numerical results show that th…
Purcell-enhancement of the radiative PL decay in perylenediimides by coupling with silver nanoparticles into waveguide modes
2017
In this work, an interesting approach to enhance the coupling between excitons and plasmons is proposed by integrating highly luminescent perylenediimides (PDIs) and Ag metal nanoparticles (MNPs) in the core of a multilayer dielectric waveguide. The combination of the weak plasmonic coupling and the high scattering of MNPs gives rise to a significant improvement of the PDI photoluminescence and Purcell factor (PF) in forward-scattering geometry. Furthermore, when the PDI-MNP system is used as the core of a multilayer waveguide, a Purcell factor enhancement larger than 10 is observed, which is explained by an increase in the exciton-plasmon coupling under the light confinement in the wavegui…
Evidence of superatom electronic shells in ligand-stabilized aluminum clusters
2011
Ligand-stabilized aluminum clusters are investigated by density functional theory calculations. Analysis of Kohn-Sham molecular orbitals and projected density of states uncovers an electronic shell structure that adheres to the superatom complex model for ligand-stabilized aluminum clusters. In this current study, we explain how the superatom complex electron-counting rule is influenced by the electron-withdrawing ligand and a dopant atom in the metallic core. The results may guide the prediction of new stable ligand-stabilized (superatom) complexes, regardless of core and electron-withdrawing ligand composition.
Dynamics of Magnetotactic Bacteria in a Rotating Magnetic Field
2007
The dynamics of the motile magnetotactic bacterium Magnetospirillum gryphiswaldense in a rotating magnetic field is investigated experimentally and analyzed by a theoretical model. These elongated bacteria are propelled by single flagella at each bacterial end and contain a magnetic filament formed by a linear assembly of approximately 40 ferromagnetic nanoparticles. The movements of the bacteria in suspension are analyzed by consideration of the orientation of their magnetic dipoles in the field, the hydrodynamic resistance of the bacteria, and the propulsive force of the flagella. Several novel features found in experiments include a velocity reversal during motion in the rotating field a…
Theoretical and experimental study of the role of cell-cell dipole interaction in dielectrophoretic devices: application to polynomial electrodes
2013
BACKGROUND: We aimed to investigate the effect of cell-cell dipole interactions in the equilibrium distributions in dielectrophoretic devices. METHODS: We used a three dimensional coupled Monte Carlo-Poisson method to theoretically study the final distribution of a system of uncharged polarizable particles suspended in a static liquid medium under the action of an oscillating non-uniform electric field generated by polynomial electrodes. The simulated distributions have been compared with experimental ones observed in the case of MDA-MB-231 cells in the same operating conditions. RESULTS: The real and simulated distributions are consistent. In both cases the cells distribution near the elec…
Optimal Classical Random Access Codes Using Single d-level Systems
2015
Recently, in the letter [Phys. Rev. Lett. {\bf 114}, 170502 (2015)], Tavakoli et al. derived interesting results by studying classical and quantum random access codes (RACs) in which the parties communicate higher-dimensional systems. They construct quantum RACs with a bigger advantage over classical RACs compared to previously considered RACs with binary alphabet. However, these results crucially hinge upon an unproven assertion that the classical strategy "majority-encoding-identity-decoding" leads to the maximum average success probability achievable for classical RACs; in this article we provide a proof of this intuition. We characterize all optimal classical RACs and show that indeed "…
Flexible ferromagnetic filaments and the interface with biology
2009
Flexible ferromagnetic filaments are studied both theoretically and experimentally. Two main deformation modes of the filament at magnetic field inversion are theoretically described and observed experimentally by using DNA-linked chains of ferromagnetic particles. Anomalous orientation of ferromagnetic filaments perpendicular to AC field with a frequency which is high enough is predicted and confirmed experimentally. By experimental studies of magnetotactic bacteria it is demonstrated how these properties of ferromagnetic filaments may be used to measure the flexibility of the chain of magnetosomes.