Search results for "Radix"
showing 8 items of 28 documents
A parallel radix-4 block cyclic reduction algorithm
2013
SUMMARY A conventional block cyclic reduction algorithm operates by halving the size of the linear system at each reduction step, that is, the algorithm is a radix-2 method. An algorithm analogous to the block cyclic reduction known as the radix-q partial solution variant of the cyclic reduction (PSCR) method allows the use of higher radix numbers and is thus more suitable for parallel architectures as it requires fever reduction steps. This paper presents an alternative and more intuitive way of deriving a radix-4 block cyclic reduction method for systems with a coefficient matrix of the form tridiag{ − I,D, − I}. This is performed by modifying an existing radix-2 block cyclic reduction me…
Interactions related to non-host snails in the host-finding process of Euparyphium albuferensis and Echinostoma friedi (Trematoda: Echinostomatidae) …
2003
In order to determine whether the miracidia of Euparyphium albuferensis and Echinostoma friedi are sensitive to their host snail (HS) and capable of discriminating between HS and non-host snails (NHS), or whether these NHS can interfere and thus reduce the infection rates (decoy effect), a total of three experiments were conducted with HS, NHS and snail-conditioned water (SCW). Gyraulus chinensis is the HS for E. albuferensis miracidia, while Physa acuta, Radix peregra and Lymnaea fuscus are considered NHS. For E. friedi miracidia R. peregra, G. chinensis and L. fuscus are the HS, while P. acuta is the NHS. The NHS R. peregra produces the greatest decoy effect on Euparyphium albuferensis mi…
Characterizing a hybrid zone between a cryptic species pair of freshwater snails.
2015
Characterizing hybrid zones and their dynamics is a central goal in evolutionary biology, but this is particularly challenging for morphologically cryptic species. The lack of conspicuous divergence between parental types means intermediate hybrid forms often go undetected. We aimed to detect and characterize a suspected hybrid zone between a pair of morphologically cryptic lineages of the freshwater snail, Radix. We sampled Radix from across a contact zone between two mitochondrial lineages (Radix balthica and an undescribed lineage termed 'MOTU3') and detected admixture between two nuclear genotype clusters, which were significantly but not categorically associated with the mitochondrial …
Rapid determination of baicalin and total baicalein content in Scutellariae radix by ATR-IR and NIR spectroscopy
2013
In this study methods for the quantification of baicalin and total baicalein in Scutellariae radix with near infrared (NIR) spectroscopy and attenuated-total-reflectance mid-infrared (ATR-IR) spectroscopy in hyphenation with multivariate analysis were developed and compared. The reference analysis was performed by high performance liquid chromatography coupled to diode array detection (HPLC-DAD). Different pretreatments like standard normal variate (SNV), multiplicative scatter correction (MSC), first and second derivative Savitzky-Golay were applied on the spectra to optimize the calibrations. A principal component analysis was performed with both spectroscopic methods to distinguish wild …
On solving separable block tridiagonal linear systems using a GPU implementation of radix-4 PSCR method
2018
Partial solution variant of the cyclic reduction (PSCR) method is a direct solver that can be applied to certain types of separable block tridiagonal linear systems. Such linear systems arise, e.g., from the Poisson and the Helmholtz equations discretized with bilinear finite-elements. Furthermore, the separability of the linear system entails that the discretization domain has to be rectangular and the discretization mesh orthogonal. A generalized graphics processing unit (GPU) implementation of the PSCR method is presented. The numerical results indicate up to 24-fold speedups when compared to an equivalent CPU implementation that utilizes a single CPU core. Attained floating point perfor…
Fasciola gigantica transmission in the zoonotic fascioliasis endemic lowlands of Guilan, Iran: experimental assessment.
2014
The lowland flatlands around the city of Bandar-Anzali, at the Caspian Sea shore, Guilan province, are an endemic area where Fasciola gigantica appears to be the fasciolid species involved and past outbreaks affecting around 15,000 people and the highest human infection rates in Iran have been reported. Fascioliasis transmission in that area has been experimentally analysed for the first time, by means of assays of monomiracidial (Group A: 120 snails) and pentamiracidial (Group B: 96 snails) infections of local Radix lymnaeid snails with a local cattle F. gigantica isolate. Ribosomal DNA ITS-2 sequencing proved that Lymnaea (Radix) gedrosiana should henceforth be considered a synonym of Rad…
Fractional-Fourier-transform calculation through the fast-Fourier-transform algorithm.
1996
A method for the calculation of the fractional Fourier transform (FRT) by means of the fast Fourier transform (FFT) algorithm is presented. The process involves mainly two FFT’s in cascade; thus the process has the same complexity as this algorithm. The method is valid for fractional orders varying from −1 to 1. Scaling factors for the FRT and Fresnel diffraction when calculated through the FFT are discussed.
Data from: Positive selection in development and growth rate regulation genes involved in species divergence of the genus Radix
2015
Background: Life history traits like developmental time, age and size at maturity are directly related to fitness in all organisms and play a major role in adaptive evolution and speciation processes. Comparative genomic or transcriptomic approaches to identify positively selected genes involved in species divergence can help to generate hypotheses on the driving forces behind speciation. Here we use a bottom-up approach to investigate this hypothesis by comparative analysis of orthologous transcripts of four closely related European Radix species. Results: Snails of the genus Radix occupy species specific distribution ranges with distinct climatic niches, indicating a potential for natural…