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showing 10 items of 22191 documents

Identification of ABA-Mediated Genetic and Metabolic Responses to Soil Flooding in Tomato (

2021

Soil flooding is a compound abiotic stress that alters soil properties and limits atmospheric gas diffusion (O2 and CO2) to the roots. The involvement of abscisic acid (ABA) in the regulation of soil flooding-specific genetic and metabolic responses has been scarcely studied despite its key importance as regulator in other abiotic stress conditions. To attain this objective, wild type and ABA-deficient tomatoes were subjected to short-term (24 h) soil waterlogging. After this period, gas exchange parameters were reduced in the wild type but not in ABA-deficient plants that always had higher E and gs. Transcript and metabolite alterations were more intense in waterlogged tissues, with genoty…

0106 biological sciences0301 basic medicinePlant Sciencelcsh:Plant culturetomatoNitrate reductase01 natural sciencesTomatoabscisic acid03 medical and health scienceschemistry.chemical_compoundAbscisic acidBIOQUIMICA Y BIOLOGIA MOLECULARlcsh:SB1-1110HypoxiaAbscisic acidOriginal ResearchOxidase testbiologyChemistryAbiotic stresshypoxiafungiWild typefood and beveragesMetabolismbiology.organism_classificationSignaling030104 developmental biologyMetabolismBiochemistrySoil floodingsoil floodingSolanumsignalingmetabolism010606 plant biology & botanyWaterlogging (agriculture)Frontiers in plant science
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Ammonium acts systemically while nitrate exerts an additional local effect on Medicago truncatula nodules

2020

National audience; Symbiotic nitrogen fixation (SNF) has a high energetic cost for legume plants; legumes thus reduce SNF when soil N is available. The present study aimed to increase our understanding regarding the impacts of the two principal forms of available N in soils (ammonium and nitrate) on SNF. We continuously measured the SNF of Medicago truncatula under controlled conditions. This permitted nodule sampling for comparative transcriptome profiling at points connected to the nodules' reaction following ammonium or nitrate applications. The N component of both ions systemically induced a rhythmic pattern of SNF, while the activity in control plants remained constant. This rhythmic a…

0106 biological sciences0301 basic medicinePlant Sciencenodule activity01 natural sciencesNicotianamine synthaseTranscriptome03 medical and health scienceschemistry.chemical_compoundNitratenitrateRNA seqAmmonium CompoundsMedicago truncatulaGeneticsAmmoniumLeghemoglobinSymbiosisLegumeNitratesbiologyNCR peptidesfungiGeneral MedicineneNASbiology.organism_classificationMedicago truncatula030104 developmental biologychemistryBiochemistrynitrogen fixation[SDE]Environmental SciencesNitrogen fixationbiology.proteinRoot Nodules PlantAgronomy and Crop Science010606 plant biology & botany
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Fungal spore diversity reflects substrate-specific deposition challenges

2018

AbstractSexual spores are important for the dispersal and population dynamics of fungi. They show remarkable morphological diversity, but the underlying forces driving spore evolution are poorly known. We investigated whether trophic status and substrate associations are associated with morphology in 787 macrofungal genera. We show that both spore size and ornamentation are associated with trophic specialization, so that large and ornamented spores are more probable in ectomycorrhizal than in saprotrophic genera. This suggests that spore ornamentation facilitates attachment to arthropod vectors, which ectomycorrhizal species may need to reach lower soil layers. Elongated spore shapes are mo…

0106 biological sciences0301 basic medicinePopulationPopulation Dynamicslcsh:MedicineMorphology (biology)Biology010603 evolutionary biology01 natural sciencesArticle03 medical and health sciencesmorfologiaAscomycotaMycorrhizaelcsh:ScienceeducationSoil MicrobiologyTrophic levelitiöteducation.field_of_studyMultidisciplinaryEcologyBasidiomycotalcsh:Rfungisubstrate-specific deposition challengesSpores FungalSubstrate (marine biology)Spore030104 developmental biologyTaxonBiological dispersalfungal spore diversitylcsh:QsienetSoil microbiologyleviäminen
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Genetic structure of a patchily distributed philopatric migrant: implications for management and conservation

2017

Significant demographic fluctuations can have major genetic consequences in wild populations. The lesser kestrel (Falco naumanni) has suffered both population declines and range fragmentation during the second half of the 20th century. In this study we analysed multilocus microsatellite data to assess the genetic structure of the species. Our analysis revealed significant genetic structuring of lesser kestrel populations, not only at the cross-continental scale, but also regionally within the Central and Eastern (CE) Mediterranean region. We detected signs of genetic bottlenecks in some of the peripheral populations coupled with small effective population sizes. Values of genetic differenti…

0106 biological sciences0301 basic medicineRange (biology)PopulationSettore BIO/05 - ZoologiaWildlifemanagement unitsKestrelMediterraneanBiology010603 evolutionary biology01 natural sciencesmicrosatellitesGene flow03 medical and health sciencesEffective population sizeeducationSocioeconomicsEcology Evolution Behavior and Systematicsmigration rateseducation.field_of_studyEcologyFalco naumanniFalco naumanniFalco naumanni – genetic diversity – lesser kestrel – management units – Mediterranean – microsatellites – migration rates.genetic diversitybiology.organism_classificationProject teamScholarship030104 developmental biologyGenetic structureBiological dispersalPhilopatrySample collectionlesser kestrelBiological Journal of the Linnean Society
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Characterization and purification of a bacterial chlorogenic acid esterase detected during the extraction of chlorogenic acid from arbuscular mycorrh…

2016

International audience; A Gram-negative bacterium able to grow using chlorogenic acid (5-caffeoylquinic acid) as sole carbon source has been isolated from the roots of tomato plants inoculated with the arbuscular mycorrhizal fungus Rhizophagus irregularis. An intracellular esterase exhibiting very high affinity (K-m = 2 mu M) for chlorogenic acid has been extracted and purified by FPLC from the chlorogenate-grown cultures of this bacterium. The molecular mass of the purified esterase determined by SDS-PAGE was 61 kDa and its isoelectric point determined by chromatofocusing was 7.75. The esterase hydrolysed chlorogenic acid analogues (caffeoylshikimate, and the 4- and 3-caffeoylquinic acid i…

0106 biological sciences0301 basic medicineRhizophagus irregularisCoumaric AcidsPhysiologyRoot-associated bacteria[SDV]Life Sciences [q-bio]Arbuscular mycorrhizal fungiPlant ScienceBiologyCoumaric acidRoot exudates01 natural sciencesEsterasePlant RootsProtocatechuic acidSubstrate SpecificityFerulic acid03 medical and health scienceschemistry.chemical_compoundHydrolysisChlorogenic acidBacterial ProteinsSolanum lycopersicumMycorrhizaeGeneticsMethyl caffeate[SDV.BV]Life Sciences [q-bio]/Vegetal BiologyBacteriaEthanolMethanolChlorogenic acidbiology.organism_classification6. Clean waterChlorogenase030104 developmental biologychemistryBiochemistry[SDE]Environmental SciencesCarboxylic Ester Hydrolases010606 plant biology & botany
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Early Plasmodium-induced inflammation does not accelerate aging in mice

2019

10 pages; International audience; Aging is associated with a decline of performance leading to reduced reproductive output and survival. While the antagonistic pleiotropy theory of aging has attracted considerable attention, the molecular/physiological functions underlying the early-life benefits/late-life costs paradigm remain elusive. We tested the hypothesis that while early activation of the inflammatory response confers benefits in terms of protection against infection, it also incurs costs in terms of reduced reproductive output at old age and shortened longevity. We infected mice with the malaria parasite Plasmodium yoelii and increased the inflammatory response using an anti-IL-10 r…

0106 biological sciences0301 basic medicineSenescencesenescencemedia_common.quotation_subjectlcsh:EvolutionInflammationBiologysourisantagonistic pleiotropy010603 evolutionary biology01 natural sciencessurvival03 medical and health sciencesPlasmodium malariaePleiotropyBiologie animaleGeneticsmedicinelcsh:QH359-425Survival rateEcology Evolution Behavior and Systematicsmedia_commonAnimal biology[SDV.BA]Life Sciences [q-bio]/Animal biologyLongevityAntagonistic pleiotropy hypothesisPlasmodium yoeliimedicine.diseasebiology.organism_classificationinfection3. Good healthsurvie030104 developmental biologyinflammationImmunology[SDV.IMM]Life Sciences [q-bio]/ImmunologyAntagonistic pleiotropyantagonistic pleiotropy;inflammation;Plasmodium yoelii;senescence;survivalmedicine.symptom[SDE.BE]Environmental Sciences/Biodiversity and EcologyGeneral Agricultural and Biological SciencesMalariaPlasmodium yoelii
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Maternal condition determines offspring behavior toward family members in the European earwig

2015

International audience; Parental care confers benefits to juveniles but is usually associated with substantial costs for parents. These costs often depend on parental condition, which is thus considered as a key determinant of the level of parental care expressed during family life. However, how parental condition affects the behaviors that juveniles express toward their siblings and parents remains poorly explored. Here, we investigated these questions in the European earwig Forficula auricularia, an insect in which mothers provide extensive forms of care to their juveniles. We measured maternal body condition at egg hatching, subsequently manipulated maternal nutritional state, and finall…

0106 biological sciences0301 basic medicineSibling rivalry (animals)Offspringparental careForficula auriculariaAffect (psychology)010603 evolutionary biology01 natural sciences03 medical and health sciencesForficula auriculariasocial evolutionEcology Evolution Behavior and SystematicsbiologyEcologybiology.organism_classificationBroodFamily lifeprecocial species[SDV.BA.ZI]Life Sciences [q-bio]/Animal biology/Invertebrate Zoology030104 developmental biologyEarwigsibling rivalryAnimal Science and ZoologyPaternal careDemography
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Topological congruence between phylogenies of Anacanthorus spp. (Monogenea: Dactylogyridae) and their Characiformes (Actinopterygii) hosts: A case of…

2017

Cophylogenetic studies aim at testing specific hypotheses to understand the nature of coevolving associations between sets of organisms, such as host and parasites. Monogeneans and their hosts provide and interesting platform for these studies due to their high host specificity. In this context, the objective of the present study was to establish whether the relationship between Anacanthorus spp. with their hosts from the upper Paraná River and its tributaries can be explained by means of cospeciation processes. Nine fish species and 14 monogenean species, most of them host specific, were studied. Partial DNA sequences of the genes RAG1, 16S and COI of the fish hosts and of the genes ITS2, …

0106 biological sciences0301 basic medicineSpeciationlcsh:MedicineAnimal PhylogeneticsCharaciformes01 natural sciencesDatabase and Informatics MethodsRNA Ribosomal 16Slcsh:ScienceDNA extractionPhylogenyData ManagementMultidisciplinaryGeographyPhylogenetic treebiologyEukaryotaPhylogenetic AnalysisPhylogeneticsFreshwater FishPhylogeographyBiogeographyVertebratesCharaciformesSequence AnalysisMonogeneaResearch ArticleComputer and Information SciencesEvolutionary ProcessesBioinformaticsContext (language use)Topology010603 evolutionary biologyHost-Parasite InteractionsElectron Transport Complex IV03 medical and health sciencesExtraction techniquesPhylogeneticsGeneticsAnimalsEvolutionary SystematicsParasite EvolutionTaxonomyHomeodomain ProteinsEvolutionary BiologyPopulation BiologyHost (biology)lcsh:REcology and Environmental SciencesOrganismsBiology and Life SciencesDNASequence Analysis DNAbiology.organism_classificationDactylogyridaeResearch and analysis methodsPhylogeographyFish030104 developmental biologyPlatyhelminthsEarth Scienceslcsh:QParasitologyZoologySequence AlignmentPopulation GeneticsPLOS ONE
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Whole genome sequencing data and de novo draft assemblies for 66 teleost species

2017

Teleost fishes comprise more than half of all vertebrate species, yet genomic data are only available for 0.2% of their diversity. Here, we present whole genome sequencing data for 66 new species of teleosts, vastly expanding the availability of genomic data for this important vertebrate group. We report on de novo assemblies based on low-coverage (9–39×) sequencing and present detailed methodology for all analyses. To facilitate further utilization of this data set, we present statistical analyses of the gene space completeness and verify the expected phylogenetic position of the sequenced genomes in a large mitogenomic context. We further present a nuclear marker set used for phylogenetic…

0106 biological sciences0301 basic medicineStatistics and ProbabilityData DescriptorComputational biologyLibrary and Information Sciences010603 evolutionary biology01 natural sciencesGenomeEducation03 medical and health sciencesbiology.animalGenome assembly algorithmsAnimalsDNA sequencingGenePhylogenyGeneticsWhole genome sequencingGenomeWhole Genome SequencingbiologyPhylogenetic treeComparative genomicsGene treeFishesRobustness (evolution)VertebrateGenomicsComputer Science ApplicationsMetadata030104 developmental biologyStatistics Probability and UncertaintyInformation SystemsScientific Data
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Energy intake functions and energy budgets of ectotherms and endotherms derived from their ontogenetic growth in body mass and timing of sexual matur…

2017

Abstract Ectothermic and endothermic vertebrates differ not only in their source of body temperature (environment vs. metabolism), but also in growth patterns, in timing of sexual maturation within life, and energy intake functions. Here, we present a mathematical model applicable to ectothermic and endothermic vertebrates. It is designed to test whether differences in the timing of sexual maturation within an animal's life (age at which sexual maturity is reached vs. longevity) together with its ontogenetic gain in body mass (growth curve) can predict the energy intake throughout the animal's life (food intake curve) and can explain differences in energy partitioning (between growth, repro…

0106 biological sciences0301 basic medicineStatistics and ProbabilityOntogenymedia_common.quotation_subjectZoologyGrowth010603 evolutionary biology01 natural sciencesEndothermic processGeneral Biochemistry Genetics and Molecular BiologyBody Mass IndexBody Temperature03 medical and health sciencesbiology.animalAnimalsSexual maturitySexual Maturationmedia_commonGeneral Immunology and MicrobiologybiologyApplied MathematicsLongevityVertebrateThermogenesisGeneral MedicineGrowth curve (biology)Models Theoretical030104 developmental biologyModeling and SimulationEctothermVertebratesReproductionEnergy IntakeGeneral Agricultural and Biological SciencesJournal of Theoretical Biology
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