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showing 10 items of 22191 documents

Natural Selection Fails to Optimize Mutation Rates for Long-Term Adaptation on Rugged Fitness Landscapes

2008

The rate of mutation is central to evolution. Mutations are required for adaptation, yet most mutations with phenotypic effects are deleterious. As a consequence, the mutation rate that maximizes adaptation will be some intermediate value. Here, we used digital organisms to investigate the ability of natural selection to adjust and optimize mutation rates. We assessed the optimal mutation rate by empirically determining what mutation rate produced the highest rate of adaptation. Then, we allowed mutation rates to evolve, and we evaluated the proximity to the optimum. Although we chose conditions favorable for mutation rate optimization, the evolved rates were invariably far below the optimu…

0106 biological sciencesMutation rateTime FactorsDigital organismsFitness landscapeQH301-705.5Biology010603 evolutionary biology01 natural sciencesCellular and Molecular Neuroscience03 medical and health sciences0302 clinical medicineGeneticsComputer SimulationBiology (General)Selection GeneticMolecular BiologyEcology Evolution Behavior and Systematics030304 developmental biology0303 health sciencesEvolutionary BiologyNatural selectionEcologyModels GeneticComputational Biology15. Life on landAdaptation PhysiologicalBiological EvolutionComputational Biology/Evolutionary ModelingReplication fidelityAsexual populationsEvolvabilityComputational Theory and MathematicsEvolutionary biologyModeling and SimulationViral evolutionMutation (genetic algorithm)MutationDNA Mismatch repairAdaptationAvida030217 neurology & neurosurgeryResearch Article
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Discrimination of common defects in loquat fruit cv. ‘Algerie’ using hyperspectral imaging and machine learning techniques

2021

Abstract Loquat (Eriobotrya japonica L.) is an important fruit for the economy of some regions of Spain that is very susceptible to mechanical damage and physiological disorders. These problems depreciate its value and prevent it from being exported. Visible (VIS) and near infrared (NIR) hyperspectral imaging was used to discriminate between external and internal common defects of loquat cv. ‘Algerie’. Two classifiers, random forest (RF) and extreme gradient boost (XGBoost), and different spectral pre-processing techniques were evaluated in terms of their capacity to distinguish between sound and defective features according to three approaches. In the first approach the fruit pixels were c…

0106 biological sciencesN01 Agricultural engineeringEriobotryaHorticulture01 natural sciences040501 horticultureNon-destructiveClassification rateH20 Plant diseasesArtificial visionMathematicsPixelbiologybusiness.industryHyperspectral imagingPattern recognition04 agricultural and veterinary sciencesClassificationbiology.organism_classificationQualityRandom forestEriobotrya japonicaMultivariate analysisN20 Agricultural machinery and equipmentArtificial intelligence0405 other agricultural sciencesbusinessAgronomy and Crop Science010606 plant biology & botanyFood SciencePostharvest Biology and Technology
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Influence of Preharvest Gibberellic Acid Treatments on Postharvest Quality of Minimally Processed Leaf Lettuce and Rocket

2019

Plant growth regulators are used in high-value vegetable crops during cultivation and after harvest to increase yield, enhance crop management, and improve or retain the produce quality. The aim of this work was to evaluate the quality characteristics during cold storage of minimally processed leaf lettuce and rocket, obtained from plants grown in a hydroponic floating system with mineral nutrient solutions (MNS) containing different levels of gibberellic acid (GA3). Plants were grown in greenhouse conditions on nutrient solutions containing 0, 10&minus

0106 biological sciencesNitrate contentFloating systemShelf lifeCold storageTitratable acidSettore AGR/04 - Orticoltura E FloricolturaPlant Sciencelcsh:Plant cultureHorticultureShelf life01 natural scienceschemistry.chemical_compound0404 agricultural biotechnologyGA3Postharvestlcsh:SB1-1110Minimally processed vegetableGibberellic acidleafy vegetablesGA<sub>3</sub>Gibberellic acidHydroponicChemistryfungiLeafy vegetablefood and beverageshydroponics04 agricultural and veterinary sciencesHydroponicsAscorbic acid040401 food scienceHorticultureRocketPostharvestAscorbic acidminimally processed vegetablesPreharvestLeaf lettuce010606 plant biology & botanyHorticulturae
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Underwater noise from boats: Measurement of its influence on the behaviour and biochemistry of the common prawn (Palaemon serratus, Pennant 1777)

2016

Abstract This study examined the effects of recorded boat noises on the behaviour and biochemistry of the common prawn ( Palaemon serratus ) in laboratory settings. The experiment was carried out in a tank equipped with a video-recording system using six groups (three control and three tested) of eight common prawns (48 animals in total). After habituation for 1 h, the behaviour of the prawns was monitored for 1 h. During the last 30 min, the animals in the test groups were exposed to noise resembling a marine area with high anthropogenic acoustic pollution. The exposure to noise produced significant changes in locomotor patterns, presence inside or outside a shelter, total protein concentr…

0106 biological sciencesNoise pollution010604 marine biology & hydrobiologyCommon prawnAquatic ScienceBiologybiology.organism_classificationEcology Evolution Behavior and Systematic010603 evolutionary biology01 natural sciencesPalaemon serratusCrustaceanFisheryNoiseBiochemistryBiochemical streAquatic sciencePrawnBehaviourBoat noiseHabituationEcology Evolution Behavior and SystematicsInvertebrateJournal of Experimental Marine Biology and Ecology
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Short-term benefits, but transgenerational costs of maternal loss in an insect with facultative maternal care

2015

A lack of parental care is generally assumed to entail substantial fitness costs for offspring that ultimately select for the maintenance of family life across generations. However, it is unknown whether these costs arise when parental care is facultative, thus questioning their fundamental importance in the early evolution of family life. Here, we investigated the short-term, long-term and transgenerational effects of maternal loss in the European earwig Forficula auricularia , an insect with facultative post-hatching maternal care. We showed that maternal loss did not influence the developmental time and survival rate of juveniles, but surprisingly yielded adults of larger body and force…

0106 biological sciencesNymphInsectaOffspringmedia_common.quotation_subject[SDV]Life Sciences [q-bio]Insect010603 evolutionary biology01 natural sciencesGeneral Biochemistry Genetics and Molecular Biology03 medical and health sciencesForficula auriculariaAnimalsBody SizeMaternal BehaviorSocial BehaviorComputingMilieux_MISCELLANEOUSResearch Articles030304 developmental biologyGeneral Environmental Sciencemedia_common0303 health sciencesFacultativeGeneral Immunology and MicrobiologybiologyBehavior AnimalEcology[SDV.BA]Life Sciences [q-bio]/Animal biologyExtremitiesGeneral MedicineFeeding Behaviorbiology.organism_classificationFamily life[SDV.BA.ZI]Life Sciences [q-bio]/Animal biology/Invertebrate ZoologyEarwigFemaleSocial evolutionGeneral Agricultural and Biological SciencesPaternal careDemography
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Habitat fragmentation and anthropogenic factors affect wildcat Felis silvestris silvestris occupancy and detectability on Mt Etna

2019

International audience; Knowledge of patterns of occupancy is crucial for planning sound biological management and for identifying areas which require paramount conservation attention. The European wildcat Felis silvestris is an elusive carnivore and is classified as ‘least concern' on the IUCN red list, but with a decreasing population trend in some areas. Sicily hosts a peculiar wildcat population, which deserves conservation and management actions, due to its isolation from the mainland. Patterns of occupancy for wildcats are unknown in Italy, and especially in Sicily. We aimed to identify which ecological drivers determined wildcat occurrence on Mt Etna and to provide conservation actio…

0106 biological sciencesOccupancybiology.animal_breedPopulationSettore BIO/05 - ZoologiaManagement Monitoring Policy and Law010603 evolutionary biology01 natural sciences010605 ornithology[SDV.BA.ZV]Life Sciences [q-bio]/Animal biology/Vertebrate ZoologyIUCN Red ListCarnivoreeducationEcology Evolution Behavior and SystematicsNature and Landscape Conservationeducation.field_of_studyHabitat fragmentationbiologyEcologyFelis silvestrisFragmentation (computing)15. Life on landGeographyHabitatEuropean wildcat[SDE.BE]Environmental Sciences/Biodiversity and Ecology
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Potential of an exploitation of acid-tolerant antimicrobial microorganisms evolving enzyme systems for the utilization of dairy by-products and ligno…

2016

Introduction Bioproduction of optically pure lactic acid (LA) has roused interest in the recent years due to its potential application in a wide range of fields, and there is a significant interest to further development of sustainable and cost-effective process. However, the efficient utilization of agro-industrial wastes for LA production still causes considerable challenges. The biotechnological LA production within the targeted cost still required the development of high-performance LA-producing microorganisms and the lowering of the costs of raw materials and fermentation process. Cheap biomass, such as starchy and cellulosic agricultural residues or by-products from the food industry,…

0106 biological sciencesOpinionHistologyMicroorganismcheese whey ; lignocellulosic substrate ; lactic acid bacteria ; enzyme activities ; lactic acid production ; fermentation processBiomedical EngineeringLignocellulosic biomassBioengineering01 natural sciences7. Clean energychemistry.chemical_compoundcheese whey010608 biotechnologyFood sciencelignocellulosic substrate2. Zero hungerchemistry.chemical_classification010405 organic chemistrybusiness.industryBioengineering and Biotechnologyfood and beveragesAntimicrobialfermentation process0104 chemical sciencesBiotechnologyLactic acidlactic acid bacteriaEnzymechemistryenzyme activities13. Climate actionFermentationlactic acid productionbusinessAcid tolerantBiotechnology
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Characterization of (3H) acifluorfen binding to purified pea etioplasts, and evidence that protoporphyrinogen oxidase specifically binds acifluorfen

1992

It is now generally accepted that protoporphyrinogen oxidase is the target-enzyme for diphenylether-type herbicides. Recent studies [Camadro, J-M., Matringe, M., Scalla, R. & Labbe, P. (1991) Biochem. J. 277, 17–21] have revealed that in maize, diphenyl ethers competitively inhibit protoporphyrinogen oxidase with respect to its substrate, protoporphyrinogen IX. In this study, we show that, in purified pea etioplast, [3H]acifluorfen specifically binds to a single class of high-affinity binding sites with an apparent dissociation constant of 6.2 ± 1.3 nM and a maximum density of 29 ± 5 nmol/g protein. [3H]Acifluorfen binding reaches equilibrium in about 1 min at 30°C. Half dissociation occurs…

0106 biological sciencesOxidoreductases Acting on CH-CH Group DonorsStereochemistry[SDV]Life Sciences [q-bio]PhthalimidesAcifluorfen01 natural sciencesBiochemistrySubstrate Specificity03 medical and health scienceschemistry.chemical_compoundMALHERBOLOGIEEtioplastProtoporphyrinogen OxidaseBinding siteComputingMilieux_MISCELLANEOUS030304 developmental biologychemistry.chemical_classificationOrganelles0303 health sciencesOxidase testBinding SitesPlants MedicinalProtoporphyrin IXMolecular StructureBIOCHIMIEHerbicidesFabaceaeProtoporphyrinogen IX[SDV] Life Sciences [q-bio]KineticsEnzymechemistryBiochemistryNitrobenzoatesProtoporphyrinogen oxidaseOxidoreductases010606 plant biology & botany
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Carbohydrate dynamics in particle-size fractions of sandy spodosols following forest conversion to maize cropping

2006

International audience; In southwest France, much of the forested land on sandy spodosols has been converted to continuous maize cropping in the last few decades. To evaluate the impacts of this change on soil organic matter properties, we compared total organic C and neutral and amino sugars content in whole soil and particle size separates of two forested, and five related sites that had been either clear-cut for 12 and 18 mo, or cultivated to maize for 4-22yr. Soil carbohydrates accounted for 4-7% of the total organic C across all sites. Soil organic C contents of clear-cut and cultivated sites were only 57-79% of the average value measured in forested sites. Accordingly, carbohydrate co…

0106 biological sciencesPINE FORESTAmino sugarChronosequenceSoil ScienceMuramic acidSilt[SDV.SA.SDS]Life Sciences [q-bio]/Agricultural sciences/Soil study01 natural sciencesMicrobiologyPARTICLE SIZE SEPARATESUCRESchemistry.chemical_compoundPoaceaeFRACTIONNEMENT GRANULOMETRIQUE2. Zero hungerchemistry.chemical_classificationPODZOSOLBIOCHIMIESoil organic matterCARBOHYDRATESPIN MARITIME04 agricultural and veterinary sciences15. Life on landPodzolchemistryAgronomyMAIZE CROPPINGSoil water040103 agronomy & agriculture0401 agriculture forestry and fisheries010606 plant biology & botany
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The drivers of soil microbial communities structure on forest stands along the altitudinal gradient in western carpathians

2020

Abstract This study examines the effect of the soil physicochemical properties and the vegetation diversity and composition on the soil microorganism community structure on the temperate forest stands along the altitudinal gradient. The studied stands were located at three altitudes (600, 900, and 1200 m a.s.l.) on five separate mountain slopes (treated as independent replicates) in the Western Carpathians Mountains (Poland). The soil physicochemical characteristics varied widely between the stands on these same altitude, and only the organic matter content, water-holding capacity and dissolved organic nitrogen differed significantly between the different altitudes, exhibited highest values…

0106 biological sciencesPLFA (Phospholipid fatty acids)Biology010603 evolutionary biology01 natural sciencesAltitudeSoil pHOrganic mattervascular plantsEcology Evolution Behavior and SystematicsNature and Landscape Conservationchemistry.chemical_classificationBiomass (ecology)EcologyVascular plantsTemperate forest04 agricultural and veterinary sciencesVegetationUnderstorySoil microbial communitieschemistryMountain forest soilssoil microbial communitiesPLFA040103 agronomy & agriculture0401 agriculture forestry and fisheriesMantel testmountain forest soilActa Oecologica
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