Search results for "Replica"

showing 10 items of 576 documents

The evolution of collective infectious units in viruses

2019

Viruses frequently spread among cells or hosts in groups, with multiple viral genomes inside the same infectious unit. These collective infectious units can consist of multiple viral genomes inside the same virion, or multiple virions inside a larger structure such as a vesicle. Collective infectious units deliver multiple viral genomes to the same cell simultaneously, which can have important implications for viral pathogenesis, antiviral resistance, and social evolution. However, little is known about why some viruses transmit in collective infectious units, whereas others do not. We used a simple evolutionary approach to model the potential costs and benefits of transmitting in a collect…

Viral pathogenesisviruseseducationGenome ViralBiologyVirus ReplicationGenomebehavioral disciplines and activitiesArticleEvolution Molecular03 medical and health sciences0302 clinical medicine030304 developmental biology0303 health sciencesVirus AssemblyAntiviral resistanceVirionDefective VirusesModels TheoreticalVirologyViral replicationViral genomesVirus Diseasespopulation characteristicsRNA Viral030217 neurology & neurosurgery
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Cordycepin analogues of 2',5'-oligoadenylate inhibit human immunodeficiency virus infection via inhibition of reverse transcriptase.

1991

Analogues of 2',5'-oligoadenylates (2-5A), the cordycepin (3'-deoxyadenosine) core trimer (Co3) and its 5'-monophosphate derivative (pCo3), were shown to display pronounced anti-human immunodeficiency virus type 1 (HIV-1) activity in vitro. Treatment of HIV-1 infected H9 cells with 1 microM Co3 or pCo3 resulted in an almost 100% inhibition of virus production. The compounds were encapsulated in liposomes targeted by antibodies specific for the T-cell receptor molecule CD3. Substitution of one or two cordycepin units in Co3 or pCo3 decreased the antiviral activity of the compounds. pCo3 did not stimulate 2-5A-dependent ribonuclease L activity and displayed no effect on the amount of cellular…

Virus ReplicationBiochemistryAntiviral AgentsVirusCell Linechemistry.chemical_compoundStructure-Activity RelationshipDeoxyadenosineHumansPolymeraseNucleic Acid Synthesis InhibitorsOligoribonucleotidesbiologyCordycepinDeoxyadenosines2'-5'-OligoadenylateAdenine NucleotidesRNAMolecular biologyReverse transcriptaseBiochemistrychemistryRNA RibosomalLiposomesbiology.proteinHIV-1RNA Transfer LysReverse Transcriptase InhibitorsRibonuclease LBiochemistry
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Within and between variations of texts elicited from nine wine experts

2006

Nine wine experts tasted in replicate six Chardonnay wines that had been aged in oak barrels from different forests and/or species. They freely gave their descriptions in writing; the only instruction given was to underline three words or expressions that best characterized each tasted wine. The texts were submitted to an objective lexical analysis that quantified the important variation among the experts. In addition a matching task was performed by 117 assessors in which each assessor received from each expert six white cards and six yellow cards representing the descriptions of the six white wines and six red wines. The assessors were incapable of matching the descriptions for the same e…

WineNutrition and Dieteticsbusiness.industryLexical analysisReplicateArtificial intelligencePsychologycomputer.software_genrebusinesscomputerNatural language processingFood ScienceFood Quality and Preference
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HOW TO MAKE A PIE: REPRODUCIBLE RESEARCH FOR EMPIRICAL ECONOMICS AND ECONOMETRICS

2020

Les recherches empiriques en sciences humaines et sociales necessitent la manipulation de nombreux fichiers : differents jeux de donnees, de multiples programmes, qu'ils soient destines a la manipulation de donnees, aux traitements statistiques, aux estimations econometriques ou a des simulations, et de nombreux fichiers successifs de resultats. Maitriser l’ensemble des etapes du projet de recherche est indispensable si l’on souhaite pouvoir reproduire ou repliquer les resultats a long terme. Cette rigueur (fiabilite, tracabilite, reproductibilite), est desormais de plus en plus exigee par notre profession ainsi que par les editeurs de revues scientifiques. Apres avoir mis en evidence les e…

Workflow *Economics and Econometrics[QFIN]Quantitative Finance [q-fin]Soft- ware05 social sciencesLiterate ProgrammingReplication01 natural sciencesReproducibility[SHS]Humanities and Social Sciences010305 fluids & plasmas[STAT]Statistics [stat]Empirical Economics0502 economics and business0103 physical sciencesEconomics[INFO]Computer Science [cs]050207 economicsJEL: A - General Economics and TeachingB- ECONOMIE ET FINANCEHumanitiesJournal of Economic Surveys
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Adenovirus E1A/E1B Transformed Amniotic Fluid Cells Support Human Cytomegalovirus Replication.

2015

The human cytomegalovirus (HCMV) replicates to high titers in primary human fibroblast cell cultures. A variety of primary human cells and some tumor-derived cell lines do also support permissive HCMV replication, yet at low levels. Cell lines established by transfection of the transforming functions of adenoviruses have been notoriously resistant to HCMV replication and progeny production. Here, we provide first-time evidence that a permanent cell line immortalized by adenovirus type 5 E1A and E1B (CAP) is supporting the full HCMV replication cycle and is releasing infectious progeny. The CAP cell line had previously been established from amniotic fluid cells which were likely derived from…

adenovirus E1A/E1BvirusesAdenoviruses Human610 Medizinlcsh:QR1-502Cytomegalovirusamniotic fluid cellsCell Transformation ViralVirus ReplicationCAPlcsh:MicrobiologyArticleCevec’s aminocyte production cell lineAdenovirus Infections Human610 Medical sciencesCytomegalovirus InfectionsHumansAdenovirus E1A ProteinsAdenovirus E1B ProteinsViruses
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Cytoplasmic Parvovirus Capsids Recruit Importin Beta for Nuclear Delivery

2019

Parvoviruses are an important platform for gene and cancer therapy. Their cell entry and the following steps, including nuclear import, are inefficient, limiting their use in therapeutic applications. Two models exist on parvoviral nuclear entry: the classical import of the viral capsid using nuclear transport receptors of the importin (karyopherin) family or the direct attachment of the capsid to the nuclear pore complex leading to the local disintegration of the nuclear envelope. Here, by laser scanning confocal microscopy and in situ proximity ligation analyses combined with coimmunoprecipitation, we show that infection requires importin β-mediated access to the nuclear pore complex and …

alpha KaryopherinsCytoplasmNuclear EnvelopevirusesImmunologyActive Transport Cell NucleusImportinKaryopherinsBiologyVirus ReplicationMicrobiologyCell LineParvoviridae InfectionsParvovirus03 medical and health sciencesCapsidCytosolViral entryVirologyAnimalsNuclear pore030304 developmental biologyKaryopherinCell Nucleuschemistry.chemical_classification0303 health sciencesNucleoplasm030302 biochemistry & molecular biologyVirus Internalizationbeta KaryopherinsVirus-Cell InteractionsCell biologychemistryCytoplasmInsect ScienceNuclear PoreCapsid ProteinsNucleoporinNuclear transportJournal of Virology
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The Putative Metal Coordination Motif in the Endonuclease Domain of Human Parvovirus B19 NS1 Is Critical for NS1 Induced S Phase Arrest and DNA Damage

2011

The non-structural proteins (NS) of the parvovirus family are highly conserved multi-functional molecules that have been extensively characterized and shown to be integral to viral replication. Along with NTP-dependent helicase activity, these proteins carry within their sequences domains that allow them to bind DNA and act as nucleases in order to resolve the concatameric intermediates developed during viral replication. The parvovirus B19 NS1 protein contains sequence domains highly similar to those previously implicated in the above-described functions of NS proteins from adeno-associated virus (AAV), minute virus of mice (MVM) and other non-human parvoviruses. Previous studies have show…

apoptotic cell deathDNA repairDNA damagevirusesAmino Acid MotifsDNA Mutational AnalysisApoptosisSpodopteraViral Nonstructural ProteinsVirus ReplicationApplied Microbiology and Biotechnology03 medical and health scienceschemistry.chemical_compound0302 clinical medicineControl of chromosome duplicationparvoviral infectionParvovirus B19 HumanAnimalsHumansMolecular BiologyEcology Evolution Behavior and SystematicsS phase030304 developmental biology0303 health sciencesbiologyParvovirushost cell DNA damagevirus diseasesHep G2 CellsCell BiologyEndonucleasesbiology.organism_classificationMolecular biology3. Good healthchemistryViral replicationS Phase Cell Cycle CheckpointsMutagenesis Site-Directed030211 gastroenterology & hepatologyDNAMinute virus of miceResearch PaperDNA DamageDevelopmental BiologyInternational Journal of Biological Sciences
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Non-structural proteins P17 and P33 are involved in the assembly of the internal membrane-containing virus PRD1.

2015

AbstractBacteriophage PRD1, which has been studied intensively at the structural and functional levels, still has some gene products with unknown functions and certain aspects of the PRD1 assembly process have remained unsolved. In this study, we demonstrate that the phage-encoded non-structural proteins P17 and P33, either individually or together, complement the defect in a temperature-sensitive GroES mutant of Escherichia coli for host growth and PRD1 propagation. Confocal microscopy of fluorescent fusion proteins revealed co-localisation between P33 and P17 as well as between P33 and the host chaperonin GroEL. A fluorescence recovery after photobleaching assay demonstrated that the diff…

assemblychaperoninvirusesMutantfluorescence recovery after photobleachingViral Nonstructural Proteinsmedicine.disease_causeVirus ReplicationChaperoninHost-Parasite InteractionsBacteriophagebacteriophageVirologymedicineEscherichia colifluorescent proteinBacteriophage PRD1Escherichia colimembrane virusMicroscopy Confocalbiologyprotein localisationVirus Assemblyta1182Fluorescence recovery after photobleachingGroESChaperonin 60biology.organism_classificationFusion proteinGroEL3. Good healthCell biologyVirology
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Endoreduplication induced in cultured Chinese hamster cells by different anti-topoisomerase II chemicals

2005

With the ultimate purpose of testing the hypothesis that, as shown in yeast mutants, any malfunction of DNA topoisomerase II might result in aberrant mitosis due to defective chromosome segregation, we have chosen three chemicals of different nature, recently reported to catalytically inhibit the enzyme. The endpoint selected to assess any negative effect on the ability of topoisomerase II to properly carry out decatenation of fully replicated chromosomes in the G2/M phase of the cell cycle was the presence of metaphases showing diplochromosomes as a result of endoreduplication, i.e. two successive rounds of DNA replication without intervening mitosis. The anti-topoisomerase drugs selected …

biologyHealth Toxicology and MutagenesisTopoisomeraseDNA replicationCell cycleMolecular biologyCell biologyChromosome segregationchemistry.chemical_compoundchemistryGeneticsbiology.proteinEndoreduplicationTopoisomerase-II InhibitorMitosisDNAMutation Research/Genetic Toxicology and Environmental Mutagenesis
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Biochemistry and Molecular Biology of DNA Replication in Yeast

1985

For the past two decades, the study of the mechanism of DNA replication has been focused mainly on the chromosomes of the simple prokaryotes and their viruses (1). The complexity of the eukaryotic genome and multiple levels of control during the replication of eukaryotic chromosomes have until recently prevented similar studies. In recent years, a lower eukaryote, the yeast Saccharomyces cerevisiae, has become a major focus of efforts in molecular biology. In this chapter, I will briefly review accomplishments in this area. Yeast is an ideal model system for studies on the structure and replication of the eukaryotic chromosome. Yeast cells are easy to grow and study biochemically. Genetic a…

biologySaccharomyces cerevisiaeDNA replicationComputational biologybiology.organism_classificationOrigin of replicationMolecular biologyYeastlaw.inventionchemistry.chemical_compoundchemistrylawEukaryotic chromosome fine structureRecombinant DNAEukaryoteDNA
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