Search results for "Rhodocyclaceae"

showing 2 items of 2 documents

Functional and genomic diversity of methylotrophic Rhodocyclaceae: description of Methyloversatilis discipulorum sp. nov.

2015

Three strains of methylotrophic Rhodocyclaceae (FAM1T, RZ18-153 and RZ94) isolated from Lake Washington sediment samples were characterized. Based on phylogenetic analysis of 16S rRNA gene sequences the strains should be assigned to the genus Methyloversatilis. Similarly to other members of the family, the strains show broad metabolic capabilities and are able to utilize a number of organic acids, alcohols and aromatic compounds in addition to methanol and methylamine. The main fatty acids were 16:1ω7c (49–59 %) and 16:0 (32–29 %). Genomes of all isolates were sequenced, assembled and annotated in collaboration with the DOE Joint Genome Institute (JGI). Genome comparison revealed that the s…

DNA BacterialWashingtonGeologic SedimentsRhodocyclaceaeSequence analysisMolecular Sequence Datalake sedimentsRhodocyclaceaeMicrobiologyPhylogeneticsRNA Ribosomal 16SMalate synthasePhylogenyEcology Evolution Behavior and SystematicsGeneticsbiologyMethanol dehydrogenaseta1184phylogenetic analysista1183Fatty AcidsGenomicsSequence Analysis DNAGeneral MedicineIsocitrate lyaseRibosomal RNA16S ribosomal RNAbiology.organism_classificationBacterial Typing TechniquesAlcohol OxidoreductasesLakesBiochemistrybiology.proteinmetabolismGenome BacterialInternational Journal of Systematic and Evolutionary Microbiology
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Spatiotemporal Variations in the Abundance and Structure of Denitrifier Communities in Sediments Differing in Nitrate Content

2017

Spatial and temporal variations related to hydric seasonality in abundance and diversity of denitrifier communities were examined in sediments taken from two sites differing in nitrate concentration along a stream Do&ntilde

Geologic SedimentsNitrite ReductasesDenitrification[SDV]Life Sciences [q-bio]Rhodocyclaceae010501 environmental sciencesNitrate01 natural sciencesVariationsSedimentschemistry.chemical_compoundSpatio-Temporal AnalysisBacterial ProteinsNitrateAbundanceDenitrifierAbundance (ecology)[SDV.BV]Life Sciences [q-bio]/Vegetal BiologyBradyrhizobiaceaeRelative species abundancePhylogenySoil Microbiology0105 earth and related environmental sciencesNitratesbiologyEcologyCommunitiesCommunity structureSedimentStructureBiodiversity04 agricultural and veterinary sciencesGeneral Medicine15. Life on landspatio-temporal; variations; abundance; structure; denitrifier; communities; sediments; differing; nitrate; contentbiology.organism_classificationDifferingBradyrhizobiaceaeContentHydric soilchemistrySpatio-Temporal[SDE]Environmental SciencesDenitrification040103 agronomy & agriculture0401 agriculture forestry and fisherieshuman activitiesCurrent Issues in Molecular Biology; Volume 24; Issue 1; Pages: 71-102
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