Search results for "SCR"

Gaining Insight into Exclusive and Common Transcriptomic Features Linked to Drought and Salinity Responses across Fruit Tree Crops

2020

The present study aimed at identifying and mapping key genes expressed in root tissues involved in drought and salinity tolerance/resistance conserved among different fruit tree species. Twenty-six RNA-Seq samples were analyzed from six published studies in five plant species (Olea europaea, Vitis riparia Michx, Prunus mahaleb, Prunus persica, Phoenix dactylifera). This meta-analysis used a bioinformatic pipeline identifying 750 genes that were commonly modulated in three salinity studies and 683 genes that were commonly regulated among three drought studies, implying their conserved role in resistance/tolerance/response to these environmental stresses. A comparison was done on the genes th…

An ancestral allele of grapevine transcription factor MYB14 promotes plant defence

2016

Highlight The molecular mechanisms underlying the elevated inducibility of stilbene in pathogen-resistant Vitis sylvestris can be explained by the increased inducibility of the MYB14 promoter.

2020

Thorny-headed worms (Acanthocephala) are endoparasites exploiting Mandibulata (Arthropoda) and Gnathostomata (Vertebrata). Despite their world-wide occurrence and economic relevance as a pest, genome and transcriptome assemblies have not been published before. However, such data might hold clues for a sustainable control of acanthocephalans in animal production. For this reason, we present the first draft of an acanthocephalan nuclear genome, besides the mitochondrial one, using the fish parasite Pomphorhynchus laevis (Palaeacanthocephala) as a model. Additionally, we have assembled and annotated the transcriptome of this species and the proteins encoded. A hybrid assembly of long and short…

Cryptic species unveiled: the case of the nematode Spauligodon atlanticus

2013

The implementation of molecular tools in parasitology has led to the discovery of numerous cryptic species. However, detailed morphological studies are needed to evaluate the cryptic nature of such species, as well as to provide an appropriate and formal description. Recent phylogenetic analyses using mitochondrial and nuclear genes have revealed that the nematode Spauligodon atlanticus, parasite of lizards of the genus Gallotia endemic to the Canary Islands, consists of two highly divergent and unrelated lineages, one in the eastern islands and the other in the western ones. This study provides a detailed morphological analysis of the two S. atlanticus lineages characterized genetically, b…

Time course analysis of the brain transcriptome during transitions between brood care and reproduction in the clonal raider ant

2017

AbstractDivision of labor between reproductive queens and non-reproductive workers that perform brood care is the hallmark of insect societies. However, the molecular basis of this fundamental dichotomy remains poorly understood, in part because the caste of an individual cannot typically be experimentally manipulated at the adult stage. Here we take advantage of the unique biology of the clonal raider ant,Ooceraea biroi, where reproduction and brood care behavior can be experimentally manipulated in adults. To study the molecular regulation of reproduction and brood care, we induced transitions between both states, and monitored brain gene expression at multiple time points. We found that …

Deficiency in the Phosphorylated Pathway of Serine Biosynthesis Perturbs Sulfur Assimilation.

2018

Although the plant Phosphorylated Pathway of l-Ser Biosynthesis (PPSB) is essential for embryo and pollen development, and for root growth, its metabolic implications have not been fully investigated. A transcriptomics analysis of Arabidopsis (Arabidopsis thaliana) PPSB-deficient mutants at night, when PPSB activity is thought to be more important, suggested interaction with the sulfate assimilation process. Because sulfate assimilation occurs mainly in the light, we also investigated it in PPSB-deficient lines in the day. Key genes in the sulfate starvation response, such as the adenosine 5′phosphosulfate reductase genes, along with sulfate transporters, especially those involved in sulfat…

Comparative transcriptomic analysis of the mechanisms underpinning ageing and fecundity in social insects.

2021

The exceptional longevity of social insect queens despite their lifelong high fecundity remains poorly understood in ageing biology. To gain insights into the mechanisms that might underlie ageing in social insects, we compared gene expression patterns between young and old castes (both queens and workers) across different lineages of social insects (two termite, two bee and two ant species). After global analyses, we paid particular attention to genes of the insulin/insulin-like growth factor 1 signalling (IIS)/target of rapamycin (TOR)/juvenile hormone (JH) network, which is well known to regulate lifespan and the trade-off between reproduction and somatic maintenance in solitary insects…

Exploration of the Oxynoticeratidae ornamental morphospace using the discrete cosine transform (DCT) to analyze rib patterns.

2006

The discrete cosine transform (DCT) is a Fourier-related transform widely used in signal processing and well suited to analyzing open outlines such as ammonite ribs. The method is applied here to depict and decipher the ribbing morphospace of a large group of Lower Jurassic ammonites composed of the Oxynoticeratidae and their close ancestors. Because they are clearly associated with buoyancy and/or swimming ability, the usually clearly involute, comparatively smooth and compressed shells of these ammonites may well be misleading taxonomic markers. In this context, quantitative analysis of the ribbing pattern using the DCT may significantly improve our perception of the ornamental patterns e…

A taxonomic revision helps to clarify differences between the Atlantic invasive Ptilohyale littoralis and the Mediterranean endemic Parhyale plumicor…

2018

Ptilohyaleexplorator (formerly Parhyaleexplorator), described by Arresti (1989), can be considered to be a synonym of west-Atlantic Ptilohyalelittoralis (Stimpson, 1853), based on morphological observations of paratypes and specimens recently collected in the type locality of Ptilohyaleexplorator. The first collections of Ptilohyalelittoralis, from the eastern Atlantic were from the port of Rotterdam (The Netherlands) in 2009 and later in Wimereux, Opal Coast (France) in 2014; however, the synonymy of Ptilohyaleexplorator with Ptilohyalelittoralis backdates to the first European record of Ptilohyalelittoralis in 1985 at La Vigne, Bay of Arcachon (France). This indicates that Ptilohyalelitto…

Anti-Inflammatory and Cytoprotective Effect of Plant Sterol and Galactooligosaccharides-Enriched Beverages in Caco-2 Cells

2019

Plant sterol (PS) (1 g/100 mL) enriched milk-based fruit beverages with or without galactooligosaccharides (GOS) (1.8 g/100 mL) were used in differentiated Caco-2 cells. Their potential cytopreventive effect against oxidative stress induced by cholesterol oxidation products (COPs) and their anti-inflammatory properties were evaluated. Preincubation (24 h) with bioaccessible fractions from beverages without and with GOS (MfB and MfB-G) completely prevented the COPs (60 μM/4 h) induced oxidative stress independent to GOS presence with exception to calcium influx and GSH content, where a partial protective effect was observed. Besides, MfB produced a significant (p < 0.05) reduction of IL-8 (4…