Search results for "SOI"
showing 10 items of 4823 documents
Novel virocell metabolic potential revealed in agricultural soils by virus-enriched soil metagenome analysis
2021
International audience; Viruses are now recognized as important players in microbial dynamics and biogeochemical cycles in the oceans. Yet, compared with aquatic ecosystems, virus discovery in terrestrial ecosystems has been challenging partly due to the inherent complexity of soils. To expand our understanding of soil viruses and their putative contributions to soil microbial processes, we analysed metagenomes of community-level virus-enriched suspensions by tangential flow filtration obtained from two French agricultural soils. We found viral sequences representing a total of 239 viral operational taxonomic units that corresponded to 29.5% of the mapping reads in the metagenomic datasets.…
Relationships between soil water repellency and microbial community composition under different plant species in a Mediterranean semiarid forest
2014
Abstract Soil water repellency (SWR) can influence many hydrological soil properties, including water infiltration, uneven moisture distribution or water retention. In the current study we investigated how variable SWR persistence in the field is related to the soil microbial community under different plant species (P. halepensis, Q. rotundifolia, C. albidus and R. officinalis) in a Mediterranean forest. The soil microbial community was determined through phospholipid fatty acids (PLFA). The relationships between microbiological community structure and the soil properties pH, Glomalin Related Soil Protein (GRSP) and soil organic matter (SOM) content were also studied. Different statistical …
Postembryonic development of the troglobitic planthopper species Valenciolenda fadaforesta Hoch & Sendra, 2021 (Hemiptera, Fulgoromorpha, Ki…
2022
All nymphal instars of the recently discovered troglobitic planthopper species Valenciolenda fadaforesta Hoch & Sendra, 2021 are described. This represents the first documentation of the complete postembryonic development of any species in the family Kinnaridae. Characters of the external morphology are described and illustrated, and a key to the instars are provided to facilitate discrimination among the different nymphal stages. While V. fadaforesta nymphs share certain synapomorphies with other Fulgoromorpha (except the Tettigometridae), e.g., the cog-wheel structures of the metatrochanters, other characters may be correlated with the subterranean way of life of the species, and thus…
Comparative genetic diversity of the narG, nosZ, and 16S rRNA genes in fluorescent Pseudomonads
2003
ABSTRACT The diversity of the membrane-bound nitrate reductase ( narG ) and nitrous oxide reductase ( nosZ ) genes in fluorescent pseudomonads isolated from soil and rhizosphere environments was characterized together with that of the 16S rRNA gene by a PCR-restriction fragment length polymorphism assay. Fragments of 1,008 bp and 1,433 bp were amplified via PCR with primers specific for the narG and nosZ genes, respectively. The presence of the narG and nosZ genes in the bacterial strains was confirmed by hybridization of the genomic DNA and the PCR products with the corresponding probes. The ability of the strains to either reduce nitrate or totally dissimilate nitrogen was assessed. Overa…
Advancing cyanobacteria biomass estimation from hyperspectral observations: Demonstrations with HICO and PRISMA imagery
2021
Retrieval of the phycocyanin concentration (PC), a characteristic pigment of, and proxy for, cyanobacteria biomass, from hyperspectral satellite remote sensing measurements is challenging due to uncertainties in the remote sensing reflectance (?R) resulting from atmospheric correction and instrument radiometric noise. Although several individual algorithms have been proven to capture local variations in cyanobacteria biomass in specific regions, their performance has not been assessed on hyperspectral images from satellite sensors. Our work leverages a machine-learning model, Mixture Density Networks (MDNs), trained on a large (N = 939) dataset of collocated in situ chlorophyll-a concentrat…
Plant effects on the soil community: A microcosm experiment
1999
Abstract An experiment was carried out in microcosms for testing the hypothesis that a higher level of primary production should maintain a decomposer community with higher biomass and activity. Microcosms with coniferous forest humus and a diverse microbial and faunal community were divided into three sets: (1) control without plants, (2) with birch seedlings in full illumination, and (3) with birch seedlings, shaded to reduce the net primary production. During 16 weeks of incubation at +16 °C, no treatment effects were found in numbers or biomass of taxonomic or functional groups of soil organisms, nor in the system respiration in darkness. The community structure of the shaded systems di…
Understorey plant and soil responses to disturbance and increased nitrogen in boreal forests
2009
Question: How do N fertilization and disturbance affect the understorey vegetation, microbial properties and soil nutrient concentration in boreal forests? Location: Kuusamo (66°22′N; 29°18′E) and Oulu (65°02′N; 25°47′E) in northern Finland. Methods: We conducted a fully factorial experiment with three factors: site (two levels), N fertilization (four levels) and disturbance (two levels). We measured treatment effects on understorey biomass, vegetation structure, and plant, soil and microbial N and C concentrations. Results: The understorey biomass was not affected by fertilization either in the control or in the disturbance treatment. Fertilization reduced the biomass of deciduous Vacciniu…
Responses of decomposer community to root-isolation and addition of slash
2001
Abstract We studied the causal relationships between forest harvesting and the soil decomposer community focusing on suppression of energy inputs from trees to the soil through root–mycorrhizal network and increased energy input to the soil in the form of slash left on site. We hypothesised that both of these factors would affect the decomposer community, since the soil food web has been regarded as a system in which the amount of resources controls the numbers of consumers. To study the importance of these factors without changes in microclimate, like in sunshine and shade, taking place in clear-felled areas, the experiment was performed in a mature spruce ( Picea abies (L.) Karst.) forest…
Soil carbon quality and nitrogen fertilization structure bacterial communities with predictable responses of major bacterial phyla
2014
Abstract Agricultural practices affect the soil ecosystem in multiple ways and the soil microbial communities represent an integrated and dynamic measure of soil status. Our aim was to test whether the soil bacterial community and the relative abundance of major bacterial phyla responded predictably to long-term organic amendments representing different carbon qualities (peat and straw) in combination with nitrogen fertilization levels and if certain bacterial groups were indicative of specific treatments. We hypothesized that the long-term treatments had created distinctly different ecological niches for soil bacteria, suitable for either fast-growing copiotrophic bacteria, or slow-growing…
Influence of carbon and nutrient additions on a decomposer food chain and the growth of pine seedlings in microcosms
2001
Abstract Because of N deposition plant production is becoming increasingly limited by other nutrients in boreal forests. At the same time more C is suggested to become available for below-ground food webs because of enhanced CO2 fixation. We studied the effects of carbon and nutrient addition on a fungus–nematode food chain and on the growth of mycorrhizal or nonmycorrhizal pine seedlings (Pinus sylvestris L.) in microcosms with N-rich mineral soil and a humus layer. The role of the food chain and mycorrhizal fungi for pine growth was tested in a smaller set-up. The total pine biomass was not N-limited at the scale of two experimental growing seasons. In accordance with established knowledg…