Search results for "SYSTEMS"
showing 10 items of 11952 documents
A hybrid short read mapping accelerator
2013
Background The rapid growth of short read datasets poses a new challenge to the short read mapping problem in terms of sensitivity and execution speed. Existing methods often use a restrictive error model for computing the alignments to improve speed, whereas more flexible error models are generally too slow for large-scale applications. A number of short read mapping software tools have been proposed. However, designs based on hardware are relatively rare. Field programmable gate arrays (FPGAs) have been successfully used in a number of specific application areas, such as the DSP and communications domains due to their outstanding parallel data processing capabilities, making them a compet…
Cattle as actors in a pastoral landscape. Gis analysis of an agropastoralist group
2018
In the study of pastoral landscapes, ethnoarchaeology can incorporate first-hand information on material features and herding prac- tices and identify the active role of domestic animals in such practices. The Mursi are a present day transhumant agro-pastoralist group, which are specialized in the livestock herding of cattle (Bos indicus). This study examines evidence from this animal behaviour and its needs, which allows us to enrich a particular construction of a herding landscape in contemporary SW Ethiopia. Remote sens- ing techniques are employed to obtain landscape snapshots of the Mursi main pasture area, which are contrasted with fieldwork data. Moreover, recent improvement in digit…
Deciphering genomic heterogeneity and the internal composition of tumour activities through a hierarchical factorisation model
2021
Genomic heterogeneity constitutes one of the most distinctive features of cancer diseases, limiting the efficacy and availability of medical treatments. Tumorigenesis emerges as a strongly stochastic process, producing a variable landscape of genomic configurations. In this context, matrix factorisation techniques represent a suitable approach for modelling such complex patterns of variability. In this work, we present a hierarchical factorisation model conceived from a systems biology point of view. The model integrates the topology of molecular pathways, allowing to simultaneously factorise genes and pathways activity matrices. The protocol was evaluated by using simulations, showing a hi…
Client Applications and Server-Side Docker for Management of RNASeq and/or VariantSeq Workflows and Pipelines of the GPRO Suite
2023
The GPRO suite is an in-progress bioinformatic project for -omics data analysis. As part of the continued growth of this project, we introduce a client- and server-side solution for comparative transcriptomics and analysis of variants. The client-side consists of two Java applications called “RNASeq” and “VariantSeq” to manage pipelines and workflows based on the most common command line interface tools for RNA-seq and Variant-seq analysis, respectively. As such, “RNASeq” and “VariantSeq” are coupled with a Linux server infrastructure (named GPRO Server-Side) that hosts all dependencies of each application (scripts, databases, and command line interface software). Implementation of the Serv…
Adaptive synchronization of master-slave systems with mixed neutral and discrete time-delays and nonlinear perturbations
2011
This paper investigates the delay-dependent adaptive synchronization problem of the master and slave structure of linear systems with both constant neutral and time-varying discrete time-delays and nonlinear perturbations based on the Barbalat lemma and matching conditions. An adaption law which includes the master-slave parameters is obtained by using the Lyapunov functional method and inequality techniques to synchronize the master-slave systems without the knowledge of upper bounds of perturbation terms. Particularly, it is shown that the synchronization speed can be controlled by adjusting the update gain of the synchronization signal. A numerical example has been given to show the effe…
ATLAS data quality operations and performance for 2015-2018 data-taking
2020
The ATLAS detector at the Large Hadron Collider reads out particle collision data from over 100 million electronic channels at a rate of approximately 100 kHz, with a recording rate for physics events of approximately 1 kHz. Before being certified for physics analysis at computer centres worldwide, the data must be scrutinised to ensure they are clean from any hardware or software related issues that may compromise their integrity. Prompt identification of these issues permits fast action to investigate, correct and potentially prevent future such problems that could render the data unusable. This is achieved through the monitoring of detector-level quantities and reconstructed collision ev…
Search for a common baryon source in high-multiplicity pp collisions at the LHC
2020
Physics letters / B B811, 135849 (2020). doi:10.1016/j.physletb.2020.135849
Measurement of the Lund jet plane using charged particles in 13 TeV proton-proton collisions with the ATLAS detector
2020
The prevalence of hadronic jets at the LHC requires that a deep understanding of jet formation and structure is achieved in order to reach the highest levels of experimental and theoretical precision. There have been many measurements of jet substructure at the LHC and previous colliders, but the targeted observables mix physical effects from various origins. Based on a recent proposal to factorize physical effects, this Letter presents a double-differential cross-section measurement of the Lund jet plane using 139 fb−1 of √s=13 TeV proton-proton collision data collected with the ATLAS detector using jets with transverse momentum above 675 GeV. The measurement uses charged particles to ac…
Un campo científico en busca de visibilidad. Jornadas internacionales sobre la calidad de las revistas de Ciencias de la Actividad Física y el Deporte
2008
El campo de las Ciencias de la Actividad Física y el Deporte (CCAFD) en España necesita de actuaciones que contribuyan a mejorar la calidad de sus publicaciones periódicas. De esta manera las revistas pueden convertirse en órganos eficientes de comunicación y difusión del conocimiento científico creado por sus investigadores. En este trabajo se detalla la realización de las “Jornadas internacionales sobre la calidad de las revistas de ciencias de la actividad física y el deporte” celebradas en Valencia el 25 y 26 de octubre de 2007. Durante esos días se discutió sobre distintas visiones de la calidad de las revistas, ejemplos de gestión editorial y estrategias concretas de mejora. Con estas…