Search results for "SYSTEMS"

showing 10 items of 11952 documents

Trackways of Arthropleura from the Late Pennsylvanian of Graissessac (Hérault, southern France)

2019

International audience; The Late Pennsylvanian deposits of the Graissessac Basin (southern France) are well known for their abundant and diversified plant remains. Here we report on seven trackways of giant millipede-like arthropods recently discovered from two surfaces. These traces are ascribed to Diplichnites cuithensis. The trackways are up to 200 cm long, up to 36 cm wide, straight to curved and consist of two parallel rows of numerous and elongated appendage imprints that are oriented perpendicular to the midline. Although body fossils of giant millipede-like arthropods remain unknown in sediments from this basin, the morphology and size of the trace fossils indicate that the trails w…

0106 biological sciences010506 paleontologyGraissessac BasinStructural basin[SDV.BID.SPT]Life Sciences [q-bio]/Biodiversity/Systematics Phylogenetics and taxonomy010603 evolutionary biology01 natural sciencesPaleontologyCarboniferous[SDV.EE.ECO]Life Sciences [q-bio]/Ecology environment/EcosystemsCarboniferousarthropodaArthropleuragigantism0105 earth and related environmental sciencesbiologyDiplichnites cuithensisfungi15. Life on land[SDV.BV.BOT]Life Sciences [q-bio]/Vegetal Biology/Botanicsbiology.organism_classificationbody regionsPennsylvanianFrance[SDE.BE]Environmental Sciences/Biodiversity and EcologyGeneral Agricultural and Biological Scienceshuman activitiesGeologyinvertebrate trackways
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Crop density rather than ruderal plants explains the response of ancient segetal weeds

2018

AbstractThe influence of ruderal species and crop density on ancient segetal weeds was examined. The experiment was carried out on experimental plots with three different sewing densities of winter triticale. Weeding of ruderal taxa was applied on half of the plots to explore the relation between segetal and ruderal weeds. Variation in species composition by environmental variables was analysed by running Redundancy Analysis (RDA) combined with performing forward selection and variation partitioning for “weeding” and “crop density” as explanatory variables. Additionally, the effect of crop density and weeding was tested separately for segetal and ruderal species along the seasons with the u…

0106 biological sciences0301 basic medicineAlien speciesPlant ScienceBiology01 natural sciencesBiochemistryCrop03 medical and health sciencesGeneticsRuderal speciesAgrostemmaMolecular BiologyForward selectionEcology Evolution Behavior and SystematicsArchaeophytesAgrocoenosesCell BiologyVegetationTriticalebiology.organism_classification030104 developmental biologyAgronomyAnimal Science and ZoologyWeedsField ecosystemsWeedRuderal species010606 plant biology & botanyBiologia
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Medicinal mushrooms: Valuable biological resources of high exploitation potential

2017

Higher Basidiomycetes and Ascomycetes mushrooms possess various immunological and anticancer properties. They also offer important health benefits and exhibit a broad spectrum of pharmacological activities including antibacterial, antifungal, antiviral, cytotoxic, immunomodulating, anti-inflammatory, antioxidative, antiallergic, antidepressive, antihyperlipidemic, antidiabetic, digestive, hepatoprotective, neuroprotective, nephroprotective, osteoprotective, and hypotensive activities. This minireview summarizes the perspectives, recent advances, and major challenges of medicinal mushrooms with reference to their nutraceutical properties and dietary value, the production of mushroom biomass …

0106 biological sciences0301 basic medicineAntifungalanimal structuresmedicine.drug_classdietary valuePlant ScienceHealth benefitsBiology01 natural sciences03 medical and health sciencesBroad spectrummushrooms cultivationNutraceuticalnutraceutical properties010608 biotechnologymedicineactive compoundsEcology Evolution Behavior and SystematicsMushroombusiness.industryfungiMedicinal mushrooms nutraceutical properties dietary value mushrooms cultivation fungal biomass active compoundsfood and beveragesBiotechnologyFungal biomass030104 developmental biologySettore BIO/03 - Botanica Ambientale E ApplicataBIOS Applied Metabolic SystemsMedicinal mushroomsfungal biomassbusiness
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Give me a sample of air and I will tell which species are found from your region : Molecular identification of fungi from airborne spore samples

2017

Fungi are a megadiverse group of organisms, they play major roles in ecosystem functioning and are important for human health, food production and nature conservation. Our knowledge on fungal diversity and fungal ecology is however still very limited, in part because surveying and identifying fungi is time demanding and requires expert knowledge. We present a method that allows anyone to generate a list of fungal species likely to occur in a region of interest, with minimal effort and without requiring taxonomical expertise. The method consists of using a cyclone sampler to acquire fungal spores directly from the air to an Eppendorf tube, and applying DNA barcoding with probabilistic specie…

0106 biological sciences0301 basic medicineBACTERIALBiodiversityAir MicrobiologyDIVERSITYmolecular identificationLANDSCAPE SCALE01 natural sciencesDNA barcodingCOMMUNITY COMPOSITIONekosysteemitTEMPORAL VARIABILITYmolecular biologymolekyylibiologiaFinlandtunnistaminen2. Zero hungeralue-ekologiaOUTDOOR AIREcologySampling (statistics)ReplicateBiodiversitySpores Fungalekosysteemipalvelut1181 Ecology evolutionary biologySeasonsrecognitionsienetecosystemsBiotechnologyregional ecologySample (material)SHORT DISTANCESBiologyspore010603 evolutionary biology03 medical and health sciencesSpecies SpecificityGeneticsDNA Barcoding Taxonomicfungal sampling methodEcosystemEcology Evolution Behavior and SystematicsMolecular identificationWOOD-INHABITING FUNGIFungi15. Life on landatmospheric diversityATMOSPHERESporeekosysteemit (ekologia)fungal diversity030104 developmental biologyfungal survey1182 Biochemistry cell and molecular biologyfungiDISPERSAL LIMITATIONecosystem services
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Evaluation of chloroplast genome annotation tools and application to analysis of the evolution of coffee species.

2018

International audience; Chloroplast sequences are widely used for phylogenetic analysis due to their high degree of conservation in plants. Whole chloroplast genomes can now be readily obtained for plant species using new sequencing methods, giving invaluable data for plant evolution However new annotation methods are required for the efficient analysis of this data to deliver high quality phylogenetic analyses. In this study, the two main tools for chloroplast genome annotation were compared. More consistent detection and annotation of genes were produced with GeSeq when compared to the currently used Dogma. This suggests that the annotation of most of the previously annotated chloroplast …

0106 biological sciences0301 basic medicineChloroplastsPlant GenomesPlant SciencePlant Genetics01 natural sciencesGenomeCoffeeDatabase and Informatics MethodsPlant GenomicsPlastidsPhylogenyData Management2. Zero hungerPlant evolutionMultidisciplinarybiologyPhylogenetic treeQRfood and beveragesPhylogenetic AnalysisGenome projectGenomicsPhylogenetics[INFO.INFO-MA]Computer Science [cs]/Multiagent Systems [cs.MA]MedicineEngineering and Technology[INFO.INFO-DC]Computer Science [cs]/Distributed Parallel and Cluster Computing [cs.DC]Cellular Structures and OrganellesCellular TypesSequence AnalysisResearch ArticleBiotechnologyComputer and Information SciencesBioinformaticsSciencePlant Cell BiologyBioengineering[INFO.INFO-SE]Computer Science [cs]/Software Engineering [cs.SE]Coffea canephoraGenes PlantResearch and Analysis Methods010603 evolutionary biology[INFO.INFO-IU]Computer Science [cs]/Ubiquitous ComputingEvolution Molecular[INFO.INFO-CR]Computer Science [cs]/Cryptography and Security [cs.CR]03 medical and health sciencesPhylogeneticsChloroplast GenomePlant CellsGeneticsEvolutionary SystematicsGenome ChloroplastTaxonomyEvolutionary BiologyCoffea arabicaCoffeafungiBiology and Life SciencesComputational BiologyMolecular Sequence AnnotationSequence Analysis DNACell Biology15. Life on landbiology.organism_classificationGenome Analysis[INFO.INFO-MO]Computer Science [cs]/Modeling and SimulationGenome Annotation030104 developmental biologyEvolutionary biology[INFO.INFO-ET]Computer Science [cs]/Emerging Technologies [cs.ET]Plant BiotechnologySequence AlignmentPloS one
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When Choice Makes Sense: Menthol Influence on Mating, Oviposition and Fecundity in Drosophila melanogaster

2016

International audience; The environment to which insects have been exposed as larvae and adults can affect subsequent behaviors, such as mating, oviposition, food preference or fitness. Experience can change female preference for oviposition, particularly in phytophagous insects. In Drosophila melanogaster, females avoid laying eggs on menthol rich-food when given the choice. Exposure to menthol during larval development reduces this aversion. However, this observation was not reproduced in the following generation. Recently, we have shown that oviposition-site preference (OSP) differs between wild type D. melanogaster lines freely or forcibly exposed to menthol. After 12 generations, menth…

0106 biological sciences0301 basic medicineCognitive Neurosciencemedia_common.quotation_subjectfecundityZoologymenthol[ SDV.BA ] Life Sciences [q-bio]/Animal biology010603 evolutionary biology01 natural scienceslcsh:RC346-429lcsh:RC321-571Courtship03 medical and health sciencesCellular and Molecular Neurosciencechemistry.chemical_compoundBiologie animaleBotanyMelanogasterFood and NutritionMatinglcsh:Neurosciences. Biological psychiatry. Neuropsychiatrylcsh:Neurology. Diseases of the nervous systemchoicemedia_commonOriginal ResearchAnimal biologyoviposition preference;courtship;mating;fecundity;Drosophila melanogaster;menthol;choiceLarvabiologyCourtship display[SDV.BA]Life Sciences [q-bio]/Animal biologyfungioviposition preferencebiology.organism_classificationFecunditySensory Systemsmating030104 developmental biologyDrosophila melanogasterchemistryAlimentation et NutritioncourtshipDrosophila melanogasterMentholNeuroscienceFrontiers in Integrative Neuroscience
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Identifying Early Warning Signals for the Sudden Transition from Mild to Severe Tobacco Etch Disease by Dynamical Network Biomarkers

2019

This article belongs to the Special Issue The Complexity of the Potyviral Interaction Network.

0106 biological sciences0301 basic medicineComplex systemsSystems biologyPotyvirusDiseaseBiologytobacco etch virusSeverity of Illness Index01 natural sciencesArticlePlant VirusesTranscriptomeViral Proteins03 medical and health sciencesPlant-virus interactionpotyvirusGene Expression Regulation PlantVirologyProtein Interaction MappingTobaccoGene Regulatory NetworksProtein Interaction Mapscomplex systemsGenePlant DiseasesGeneticsTransition (genetics)Tobacco etch virusGene Expression Profilingsystems biologyDNBBiotic stressresponse to infectionbiology.organism_classificationplant-virus interactionTobacco etch virusphase transitionsprotein-protein interaction networks030104 developmental biologyInfectious DiseasesPhase transitionsHost-Pathogen InteractionsMutationBiomarker (medicine)BiomarkersSignal Transduction010606 plant biology & botanyViruses
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A self-inducible heterologous protein expression system in Escherichia coli

2016

AbstractEscherichia coli is an important experimental, medical and industrial cell factory for recombinant protein production. The inducible lac promoter is one of the most commonly used promoters for heterologous protein expression in E. coli. Isopropyl-β-D-thiogalactoside (IPTG) is currently the most efficient molecular inducer for regulating this promoter’s transcriptional activity. However, limitations have been observed in large-scale and microplate production, including toxicity, cost and culture monitoring. Here, we report the novel SILEX (Self-InducibLe Expression) system, which is a convenient, cost-effective alternative that does not require cell density monitoring or IPTG inducti…

0106 biological sciences0301 basic medicineExpression systemslac operonHeterologousGene ExpressionmechanismLac repressorBiology[ SDV.MP.BAC ] Life Sciences [q-bio]/Microbiology and Parasitology/Bacteriologymedicine.disease_cause01 natural sciencesArticlelaw.inventionApplied microbiologylactose03 medical and health scienceslawlac repressor010608 biotechnologyt1r3 taste receptor[SDV.BBM.GTP]Life Sciences [q-bio]/Biochemistry Molecular Biology/Genomics [q-bio.GN]Gene expressionmedicineEscherichia coliFood and NutritionInducerstationary-phaserecombinant geneinducerEscherichia coliMultidisciplinaryhsp70PromoterMolecular biology[SDV.MP.BAC]Life Sciences [q-bio]/Microbiology and Parasitology/BacteriologyRecombinant Proteins030104 developmental biologycloned genesBiochemistry[ SDV.BBM.GTP ] Life Sciences [q-bio]/Biochemistry Molecular Biology/Genomics [q-bio.GN]Alimentation et NutritionRecombinant DNA[SDV.BBM.GTP] Life Sciences [q-bio]/Biochemistry Molecular Biology/Genomics [q-bio.GN]bacteriophage-t7 rna-polymerase[SDV.MP.BAC] Life Sciences [q-bio]/Microbiology and Parasitology/Bacteriology
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On the thermodynamic origin of metabolic scaling

2018

The origin and shape of metabolic scaling has been controversial since Kleiber found that basal metabolic rate of animals seemed to vary as a power law of their body mass with exponent 3/4, instead of 2/3, as a surface-to-volume argument predicts. The universality of exponent 3/4 -claimed in terms of the fractal properties of the nutrient network- has recently been challenged according to empirical evidence that observed a wealth of robust exponents deviating from 3/4. Here we present a conceptually simple thermodynamic framework, where the dependence of metabolic rate with body mass emerges from a trade-off between the energy dissipated as heat and the energy efficiently used by the organi…

0106 biological sciences0301 basic medicineFOS: Physical scienceslcsh:Medicine92B05010603 evolutionary biology01 natural sciencesPower lawArticle03 medical and health sciencesFractalPhysics - Biological PhysicsStatistical physicslcsh:ScienceQuantitative Biology - Populations and EvolutionAdditive modelScalingMathematicsMultidisciplinarylcsh:RPopulations and Evolution (q-bio.PE)Universality (dynamical systems)030104 developmental biologyBiological Physics (physics.bio-ph)13. Climate actionFOS: Biological sciencesEctothermBasal metabolic rateExponentlcsh:QScientific Reports
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Lipid Nanoparticles as Potential Gene Therapeutic Delivery Systems for Oral Administration.

2017

Background Gene therapy has experimented an increasing attention in the last decades, due to its enormous potential applications in the medical field. It can be defined as the use of genes or genetic material (DNA, RNA, oligonucleotides) to treat or prevent a disease state, generally a geneticbased one. Application Other applications, like treating viral, bacterial or parasite infections or development of vaccines are gaining also interest. Efficient gene therapy is mainly dependent on the ability of the highly labile genetic material to reach the therapeutic target. For this purpose, different delivery systems have been designed and extensively investigated. Nanoparticles offer a broad ran…

0106 biological sciences0301 basic medicineGenetic enhancementAdministration OralComputational biologyBiologyGene deliveryPharmacology01 natural sciences03 medical and health sciencesDrug Delivery SystemsOral administration010608 biotechnologyNucleic AcidsDrug DiscoverySolid lipid nanoparticleGeneticsOral routeAnimalsHumansParasite InfectionsMolecular BiologyGeneGenetics (clinical)Drug CarriersGene Transfer TechniquesGenetic TherapyBiocompatible materialLipids030104 developmental biologyMolecular MedicineNanoparticlesCurrent gene therapy
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