Search results for "Simulation"

Human T cells in silico: Modelling their electrophysiological behaviour in health and disease

2016

Although various types of ion channels are known to have an impact on human T cell effector functions, their exact mechanisms of influence are still poorly understood. The patch clamp technique is a well-established method for the investigation of ion channels in neurons and T cells. However, small cell sizes and limited selectivity of pharmacological blockers restrict the value of this experimental approach. Building a realistic T cell computer model therefore can help to overcome these kinds of limitations as well as reduce the overall experimental effort. The computer model introduced here was fed off ion channel parameters from literature and new experimental data. It is capable of simu…

Mutant MHC class II epitopes drive therapeutic immune responses to cancer

2015

Tumour-specific mutations are ideal targets for cancer immunotherapy as they lack expression in healthy tissues and can potentially be recognized as neo-antigens by the mature T-cell repertoire. Their systematic targeting by vaccine approaches, however, has been hampered by the fact that every patient's tumour possesses a unique set of mutations ('the mutanome') that must first be identified. Recently, we proposed a personalized immunotherapy approach to target the full spectrum of a patient's individual tumour-specific mutations. Here we show in three independent murine tumour models that a considerable fraction of non-synonymous cancer mutations is immunogenic and that, unexpectedly, the …

A Definitive Pharmacophore Modelling Study on CDK2 ATP Pocket Binders: Tracing the Path of New Virtual High-Throughput Screenings

2020

Cyclin Dependent Kinases-2 (CDK2) are members of serine/threonine protein kinases family. They play an important role in the regulation events of the eukaryotic cell division cycle, especially during the G1 to S phase transition. Experimental evidence indicate that excessive expression of CDK2s should cause abnormal cell cycle regulation. Therefore, since a long time, CDK2s have been considered potential therapeutic targets for cancer therapy. In this work, onehundred and forty-nine complexes of inhibitors bound in the CDK2-ATP pocket were submitted to short MD simulations (10ns) and free energy calculation. Comparison with experimental data (K<sub>i</sub>, K<sub>d</su…

CFD prediction of bubbles local gas hold-up in 2-dimensional gas-solid fluidized beds

2008

Study of the performances of a fluidynamic actuator

2018

Aim of this paper is presented a new methodology to study how different geometric parameters affect the performance of a hydraulic actuator. Preliminarily, the real working conditions of a hydraulic machine have been simulated by means of a CFD module. After, to test the reliability of the simulations, the obtained numerical results have been compared with the experimental data of a real prototype. This comparison demonstrates a good level of agreement between numerical and experimental results. Different simulations have been setup by modifying the actuator geometry and evaluating the efficiency of every analysed configuration. The results of this study give useful guidelines for the choic…

FILTERING CHAOS: A TECHNIQUE TO ESTIMATE DYNAMICAL AND OBSERVATIONAL NOISE IN NONLINEAR SYSTEMS

2005

Nonlinear dynamical models are frequently used to approximate and predict observed physical, biological and economic systems. Such models will be subject to errors both in the model dynamics, and the observations of the underlying system. In order to improve models, it is necessary to understand the causes of error growth. A complication with chaotic models is that small errors may be amplified by the model dynamics. This paper proposes a technique for estimating levels of both dynamical and observational noise, based on the model drift. The method is demonstrated for a number of models, for cases with both stochastic and nonstochastic dynamical errors. The effect of smoothing or treating …

Development of a chewing simulator for food breakdown and the analysis of in vitro flavor compound release in a mouth environment

2007

International audience; Flavor release during eating is highly dependent upon mouth parameters. Major limitations have been reported during in vivo flavor release studies, such as marked intra- and inter-individual variability. To overcome these limitations, a chewing simulator has been developed to mimic the human mastication of food samples. Several devices had already been developed for diverse applications, but they only reproduced certain oral functions and were therefore not characteristic of the natural mouth environment. The newly developed device faithfully reproduces most of the functions of the human mouth. The active part of the system is a special cell, precisely tooled using a…

Attitude measurement by artificial vision

2005

The recent development of light and low-cost airborne platforms (microlight, drones, kites, balloons,...) has led to the need for simple and low-cost devices allowing attitude measurement with respect to a reference horizon of the platform itself or of an embedded setting. A theoretical study of the conditions for measuring attitude angles from artificial vision is proposed and an original practical algorithm allowing these measurements to be performed in real time is described. An implementation in a CMOS retina circuit is also presented. These points are illustrated by experiments confirming the feasibility of the device.

Effect of stiffness on the phase behavior of cubic lattice chains

2005

Gran canonica Monte Carlo (GCMC) simulazioni assistite da tecniche di riponderazione istogramma sono stati utilizzati per studiare l'effetto della flessibilità catena sul comportamento di soluzione fase di cubi catene reticolari corti con 4-32 segmenti. Ciò è stato fatto variando un parametro di rigidità gradualmente fino alla media calcolata end-to-end distanza avvicinato la lunghezza totale. Per entrambe le catene flessibili e rigide si è riscontrato che la temperatura critica, ottenuta tramite mista analisi dei campi di dimensioni finite, aumentata lunghezza della catena e la densità critica trasferisce a valori più bassi, in accordo con le osservazioni sperimentali. Il estrapolato lungh…

Measurement of the muon neutrino inclusive charged-current cross section in the energy range of 1–3 GeV with the T2K INGRID detector

2016

International audience; We report a measurement of the $\nu_{\mu}$-nucleus inclusive charged current cross section (=$\sigma^{cc}$) on iron using data from exposed to the J-PARC neutrino beam. The detector consists of 14 modules in total, which are spread over a range of off-axis angles from 0$^\circ$ to 1.1$^\circ$. The variation in the neutrino energy spectrum as a function of the off-axis angle, combined with event topology information, is used to calculate this cross section as a function of neutrino energy. The cross section is measured to be $\sigma^{cc}(1.1\text{ GeV}) = 1.10 \pm 0.15$ $(10^{-38}\text{cm}^2/\text{nucleon})$, $\sigma^{cc}(2.0\text{ GeV}) = 2.07 \pm 0.27$ $(10^{-38}\te…