Search results for "Software"
showing 10 items of 7396 documents
Stage boundaries, global stratigraphy, and the time scale: towards a simplification
2004
International audience; This paper examines four facets of stratigraphic terminology and usage considered faulty and proposes corrective measures. The four perfectible areas are: (1) The system of dual nomenclature requiring discrete terminologies for the superpositional and temporal aspects of rock units. (2) The premise that a GSSP establishes the base of a stage as being coincident with the top of the preceding stage rather than simply defining it as the boundary between stages. (3) The rejection of supplementary (auxiliary) sections that would broaden the knowledge of a GSSP and enlarge the area in which it is easily usable. (4) The current dual system of nomenclature for Precambrian an…
Speleothems from the Middle East: An Example of Water Limited Environments in the SISAL Database
2019
The Middle East (ME) spans the transition between a temperate Mediterranean climate in the Levant to hyper-arid sub-tropical deserts in the southern part of the Arabian Peninsula (AP), with the complex alpine topography in the northeast feeding the Euphrates and Tigris rivers which support life in the Southeastern Fertile Crescent (FC). Climate projections predict severe drying in several parts of the ME in response to global warming, making it important to understand the controls of hydro-climate perturbations in the region. Here we discuss 23 ME speleothem stable oxygen isotope (δ18Occ) records from 16 sites from the SISAL_v1 database (Speleothem Isotope Synthesis and Analysis database), …
Planning for the future : identifying conservation priority areas for Iberian birds under climate change
2018
[Context]: Species are expected to shift their distributions in response to global environmental changes and additional protected areas are needed to encompass the corresponding changes in the distributions of their habitats. Conservation policies are likely to become obsolete unless they integrate the potential impacts of climate and land-use change on biodiversity.
Evaluation of chloroplast genome annotation tools and application to analysis of the evolution of coffee species.
2018
International audience; Chloroplast sequences are widely used for phylogenetic analysis due to their high degree of conservation in plants. Whole chloroplast genomes can now be readily obtained for plant species using new sequencing methods, giving invaluable data for plant evolution However new annotation methods are required for the efficient analysis of this data to deliver high quality phylogenetic analyses. In this study, the two main tools for chloroplast genome annotation were compared. More consistent detection and annotation of genes were produced with GeSeq when compared to the currently used Dogma. This suggests that the annotation of most of the previously annotated chloroplast …
X!TandemPipeline: a tool to manage sequence redundancy for protein inference and phosphosite identification
2017
X!TandemPipeline is a software designed to perform protein inference and to manage redundancy in the results of phosphosite identification by database search. It provides the minimal list of proteins or phosphosites that are present in a set of samples using grouping algorithms based on the principle of parsimony. Regarding proteins, a two-level classification is performed, where groups gather proteins sharing at least one peptide and subgroups gather proteins that are not distinguishable according to the identified peptides. Regarding phosphosites, an innovative approach based on the concept of phosphoisland is used to gather overlapping phosphopeptides. The graphical interface of X!Tandem…
Low but contrasting neutral genetic differentiation shaped by winter temperature in European great tits.
2016
Gene flow is usually thought to reduce genetic divergence and impede local adaptation by homogenising gene pools between populations. However, evidence for local adaptation and phenotypic differentiation in highly mobile species, experiencing high levels of gene flow, is emerging. Assessing population genetic structure at different spatial scales is thus a crucial step towards understanding mechanisms underlying intraspecific differentiation and diversification. Here, we studied the population genetic structure of a highly mobile species - the great tit Parus major - at different spatial scales. We analysed 884 individuals from 30 sites across Europe including 10 close-by sites (< 50 km), u…
Potential use of machine learning methods in assessment of Fusarium culmorum and Fusariumproliferatum growth and mycotoxin production in treatments w…
2021
Abstract The use of Fusarium-controlling fungicides is necessary to limit crop loss. Little is known about the effect of commercial antifungal formulations at sub-lethal doses, and their interaction with abiotic factors, on Fusarium culmorum and F. proliferatum development and on zearalenone and fumonisin biosynthesis, respectively. In the present study different treatments based on sulfur, trifloxystrobin and demethylation inhibitor fungicides (cyproconazole, tebuconazole and prothioconazole) under different environmental conditions, in Maize Extract Medium (MEM), are assayed in vitro. Then, several machine learning methods (neural networks, random forest and extreme gradient boosted trees…
Evaluation of image processing technique as an expert system in mulberry fruit grading based on ripeness level using artificial neural networks (ANNs…
2020
Abstract Image processing and artificial intelligence (AI) techniques have been applied to analyze, evaluate and classify mulberry fruit according to their ripeness (unripe, ripe, and overripe). A total of 577 mulberries were graded by an expert and the images were captured by an imaging system. Then, the geometrical properties, color, and texture characteristics of each segmented mulberry was extracted using two feature reduction methods: Correlation-based Feature Selection subset (CFS) and Consistency subset (CONS). Artificial Neural Networks (ANN) and Support Vector Machine (SVM) were applied to classify mulberry fruit. ANN classification with the CFS subset feature extraction method res…
GrassPlot – a database of multi-scale plant diversity in Palaearctic grasslands
2018
GrassPlot is a collaborative vegetation-plot database organised by the Eurasian Dry Grassland Group (EDGG) and listed in the Global Index of Vegetation-Plot Databases (GIVD ID EU-00-003). GrassPlot collects plot records (relevés) from grasslands and other open habitats of the Palaearctic biogeographic realm. It focuses on precisely delimited plots of eight standard grain sizes (0.0001; 0.001; ... 1,000 m²) and on nested-plot series with at least four different grain sizes. The usage of GrassPlot is regulated through Bylaws that intend to balance the interests of data contributors and data users. The current version (v. 1.00) contains data for approximately 170,000 plots of different sizes a…
Database of diazotrophs in global ocean: abundance, biomass and nitrogen fixation rates
2012
Marine N<sub>2</sub> fixing microorganisms, termed diazotrophs, are a key functional group in marine pelagic ecosystems. The biological fixation of dinitrogen (N<sub>2</sub>) to bioavailable nitrogen provides an important new source of nitrogen for pelagic marine ecosystems and influences primary productivity and organic matter export to the deep ocean. As one of a series of efforts to collect biomass and rates specific to different phytoplankton functional groups, we have constructed a database on diazotrophic organisms in the global pelagic upper ocean by compiling about 12 000 direct field measurements of cyanobacterial diazotroph abundances (based on microscopic …