Search results for "Software"
showing 10 items of 7396 documents
Wearable PPG Sensor Matrix for Cardiovascular Assessment
2014
Wearable biomonitoring systems and smart textiles for healthcare are gaining more importance and significance in the R&D sphere due to their potentials in healthcare and sports. Such biomonitoring systems offer a number of advantages in comparison to the conventional equipment proving mobility of the wearer during a long-term monitoring of vital parameters. There are different options to set up the physiological monitoring using wireless and wearable technologies. One of the scenarios is addressing textiles as a carrier of electronics. Moreover, those differ by their functional applications, registered physiological parameters and technology solutions. Still, the most demanded biomonitoring…
Faster GPU-Accelerated Smith-Waterman Algorithm with Alignment Backtracking for Short DNA Sequences
2014
In this paper, we present a GPU-accelerated Smith-Waterman (SW) algorithm with Alignment Backtracking, called GSWAB, for short DNA sequences. This algorithm performs all-to-all pairwise alignments and retrieves optimal local alignments on CUDA-enabled GPUs. To facilitate fast alignment backtracking, we have investigated a tile-based SW implementation using the CUDA programming model. This tiled computing pattern enables us to more deeply explore the powerful compute capability of GPUs. We have evaluated the performance of GSWAB on a Kepler-based GeForce GTX Titan graphics card. The results show that GSWAB can achieve a performance of up to 56.8 GCUPS on large-scale datasets. Furthermore, ou…
Algorithms for Graph and Network Analysis: Graph Alignment
2019
In this article we discuss the problem of graph alignment, which has been longly referred to for the purpose of analyzing and comparing biological networks. In particular, we describe different facets of graph alignment, according to the number of input networks, the fixed output objective, the possible heterogeneity of input data. Accordingly, we will discuss pairwise and multiple alignment, global and local alignment, etc. Moreover, we provide a comprehensive overview of the algorithms and techniques proposed in the literature to solve each of the specific considered types of graph alignment. In order to make the material presented here complete and useful to guide the reader in the use o…
GSWABE: faster GPU-accelerated sequence alignment with optimal alignment retrieval for short DNA sequences
2014
In this paper, we present GSWABE, a graphics processing unit GPU-accelerated pairwise sequence alignment algorithm for a collection of short DNA sequences. This algorithm supports all-to-all pairwise global, semi-global and local alignment, and retrieves optimal alignments on Compute Unified Device Architecture CUDA-enabled GPUs. All of the three alignment types are based on dynamic programming and share almost the same computational pattern. Thus, we have investigated a general tile-based approach to facilitating fast alignment by deeply exploring the powerful compute capability of CUDA-enabled GPUs. The performance of GSWABE has been evaluated on a Kepler-based Tesla K40 GPU using a varie…
A distributed-memory MPI parallelization scheme for multi-domain incompressible SPH
2022
A parallel scheme for a multi-domain truly incompressible smoothed particle hydrodynamics (SPH) approach is presented. The proposed method is developed for distributed-memory architectures through the Message Passing Interface (MPI) paradigm as communication between partitions. The proposal aims to overcome one of the main drawbacks of the SPH method, which is the high computational cost with respect to mesh-based methods, by coupling a multi-resolution approach with parallel computing techniques. The multi-domain approach aims to employ different resolutions by subdividing the computational domain into non-overlapping blocks separated by block interfaces. The particles belonging to differe…
A new weighted normal-based filter for 3D mesh denoising
2018
In this paper, we propose a normal based filtering method for 3D mesh denoising. For this purpose, we compute the new triangle normal vectors by using a weighted sum of the average (smoothness) and the myriad (sharpness) filters in each neighborhood. These weights, that reflect the degree of the surface sharpness, are calculated according to the statistical distribution of the angles between the normal vectors of the triangles. The histogram of the angles between surface normal vectors is accurately fitted by the well known Cauchy distribution. Here, we justify the use of the myriad filter whose estimated value represents the optimum of the location parameter of the investigated distributio…
Splitting the data cache: a survey
2000
Recent cache-memory research has focused on approaches that split the first-level data cache into two independent subcaches. The authors introduce a methodology for helping cache designers devise splitting schemes and survey a representative set of the published cache schemes.
Studying micro-communities in Facebook Communities
2018
In the visionary view of the future Internet, named the Next Generation Internet, a current idea is to have a user-centric approach where human behavior models will be used to define the networks or to manage services. During the last years, a great trend in current Social Media platforms is to offer the opportunity to establish and join groups of people online. Despite human behaviour in current Online Social Media have been studied in depth, characteristics of these aggregations of people in content-based communities are still unknown. In this paper, we propose an evaluation of micro-communities of users inside the big network of Facebook groups to understand how and when users are active…
A Bibliometric history of the Journal of Psychology between 1936 and 2015
2018
© 2018 Taylor & Francis Group, LLC. The Journal of Psychology: Interdisciplinary and Applied is a leading international journal in psychology dating back to 1935. This study examines its publications since its creation utilizing a bibliometric analysis. The primary objective is to provide a complete overview of the key factors affecting the journal. This analysis includes such key issues as the publication and citation structure of the journal, its most cited articles, and the leading authors, institutions, and countries referenced in the journal. The work uses the Scopus database to classify the bibliographic material. Additionally, the analysis provides a graphical mapping of the bibliogr…
The Conceptual Levels and Theory Languages of Interaction Design
2009
In a way, concepts are like friends. Tell me what your concepts are and I can tell what you are. Modifying freely the way Wittgenstein (1921) expressed this important Kantian (1781) point on the limiting power of concepts on one’s thinking, the concepts that human– technology interaction designers of different scientific backgrounds use differ from each other and, consequently, they are apt to solve the same tasks in different ways. Theoretical concepts constrain the kinds of questions specialists can ask and what kinds of things they are interested in. Thus programmers have a different view of users than do psychologists or sociologists. Just as a lay person can understand little about ven…