Search results for "Software"
showing 10 items of 7396 documents
GPU-accelerated exhaustive search for third-order epistatic interactions in case–control studies
2015
This is a post-peer-review, pre-copyedit version of an article published in Journal of Computational Science. The final authenticated version is available online at: https://doi.org/10.1016/j.jocs.2015.04.001 [Abstract] Interest in discovering combinations of genetic markers from case–control studies, such as Genome Wide Association Studies (GWAS), that are strongly associated to diseases has increased in recent years. Detecting epistasis, i.e. interactions among k markers (k ≥ 2), is an important but time consuming operation since statistical computations have to be performed for each k-tuple of measured markers. Efficient exhaustive methods have been proposed for k = 2, but exhaustive thi…
Challenges of Program Synthesis with Grammatical Evolution
2020
Program synthesis is an emerging research topic in the field of EC with the potential to improve real-world software development. Grammar-guided approaches like GE are suitable for program synthesis as they can express common programming languages with their required properties. This work uses common software metrics (lines of code, McCabe metric, size and depth of the abstract syntax tree) for an analysis of GE’s search behavior and the resulting problem structure. We find that GE is not able to solve program synthesis problems, where correct solutions have higher values of the McCabe metric (which means they require conditions or loops). Since small mutations of high-quality solutions str…
Artificial Intelligence + Distributed Systems = Agents
2009
The connection with Wirth’s book goes beyond the title, albeit confining the area to modern Artificial Intelligence (AI). Whereas thirty years ago, to devise effective programs, it became necessary to enhance the classical algorithmic framework with approaches applied to limited and focused subdomains, in the context of broad-band technology and semantic web, applications - running in open, heterogeneous, dynamic and uncertain environments-current paradigms are not enough, because of the shift from programs to processes. Beside the structure as position paper, to give more weight to some basic assertions, results of recent research are abridged and commented upon in line with new paradigms.…
A grid ant colony algorithm for the orienteering problem
2005
In this paper we propose a distributed ant colony algorithm to solve large scale orienteering problem instances. Our approach is based on a multi-colony strategy where each colony works in an independent portion (cluster) in the original graph. This results in no need for communicating pheromones information among colonies and in increasing speedup. We have implemented our algorithm as a .NET Web services infrastructure following a grid computing philosophy and we provide some promising experimental results to show the feasibility and effectiveness of our approach
Researching Conditional Probability Problem Solving
2014
The chapter is organized into two parts. In the first one, the main protagonist is the conditional probability problem. We show a theoretical study about conditional probability problems, identifying a particular family of problems we call ternary problems of conditional probability. We define the notions of Level, Category and Type of a problem in order to classify them into sub-families and in order to study them better. We also offer a tool we call trinomial graph that functions as a generative model for this family of problems. We show the syntax of the model that allows researchers and teachers to translate a problem in terms of the trinomial graphs language, and the consequences of th…
Mesh connectivity compression using convection reconstruction
2007
International audience; During a highly productive period running from 1995 to about 2002, the research in lossless compression of 3D meshes mainly consisted in a hard battle for the best bitrates. But for a few years, compression rates seem stabilized around 1.5 bit per vertex for the connectivity coding of usual meshes, and more and more work is dedicated to remeshing, lossy compression, or gigantic mesh compression, where memory and CPU optimizations are the new priority. However, the size of 3D models keeps growing, and many application fields keep requiring lossless compression. In this paper, we present a new contribution for single-rate lossless connectivity compression, which first …
Robustness and Randomness
2008
The study of robustness problems for computational geometry algorithms is a topic that has been subject to intensive research efforts from both computer science and mathematics communities. Robustness problems are caused by the lack of precision in computations involving floating-point instead of real numbers. This paper reviews methods dealing with robustness and inaccuracy problems. It discusses approaches based on exact arithmetic, interval arithmetic and probabilistic methods. The paper investigates the possibility to use randomness at certain levels of reasoning to make geometric constructions more robust.
More Power through Symbolic Computation: Extending Stata by using the Maxima Computer algebra system
2015
Maxima is a free and open-source computer algebra system that can perform symbolic computations such as solving equations, determining derivatives of functions, obtaining Taylor series, and manipulating algebraic expressions. In this article, I present the Maxima Bridge System, which is a collection of software programs that allows Stata to interface with Maxima so that Maxima can be used for symbolic computation to transfer data from Stata to Maxima and to retrieve results from Maxima. The cooperation between Stata and Maxima provides an environment for statistical analysis in which symbolic computation can be easily used together with all the facilities supplied by Stata. In this environ…
High Locality Representations for Automated Programming
2011
We study the locality of the genotype-phenotype mapping used in grammatical evolution (GE). GE is a variant of genetic programming that can evolve complete programs in an arbitrary language using a variable-length binary string. In contrast to standard GP, which applies search operators directly to phenotypes, GE uses an additional mapping and applies search operators to binary genotypes. Therefore, there is a large semantic gap between genotypes (binary strings) and phenotypes (programs or expressions). The case study shows that the mapping used in GE has low locality leading to low performance of standard mutation operators. The study at hand is an example of how basic design principles o…
Online Induction of Probabilistic Real Time Automata
2012
Probabilistic real time automata (PRTAs) are a representation of dynamic processes arising in the sciences and industry. Currently, the induction of automata is divided into two steps: the creation of the prefix tree acceptor (PTA) and the merge procedure based on clustering of the states. These two steps can be very time intensive when a PRTA is to be induced for massive or even unbounded data sets. The latter one can be efficiently processed, as there exist scalable online clustering algorithms. However, the creation of the PTA still can be very time consuming. To overcome this problem, we propose a genuine online PRTA induction approach that incorporates new instances by first collapsing…