Search results for "Soil"
showing 10 items of 3493 documents
Poplar biomass production at phytomanagement sites is significantly enhanced by mycorrhizal inoculation
2017
Abstract Afforestation of trace element (TE)-contaminated soil, notably with fast growing trees producing large biomass has been demonstrated to be an attractive option for their bioremediation. Mycorrhizal fungi can form symbiotic associations with plants, contributing to TE tolerance and participating actively in bioremediation processes. We studied the effects of mycorrhizal inoculation on the growth of two poplar clones (Skado and I214), to large-scale. Two TE-contaminated sites of ca . 1 ha (Pierrelaye and Fresnes-sur-Escaut, France) were planted with 2200 trees, and were either inoculated with a mixed commercial inoculum or not-inoculated and allometric parameters were determined afte…
Defoliation effects on Plantago lanceolata resource allocation and soil decomposers in relation to AM symbiosis and fertilization
2009
Plants can mediate interactions between aboveground herbivores and belowground decomposers as both groups depend on plant-provided organic carbon. Most vascular plants also form symbiosis with arbuscular mycorrhizal fungi (AMF), which compete for plant carbon too. Our aim was to reveal how defoliation (trimming of plant leaves twice to 6 cm above the soil surface) and mycorrhizal infection (inoculation of the fungus Glomus claroideum BEG31), in nutrient poor and fertilized conditions, affect plant growth and resource allocation. We also tested how these effects can influence the abundance of microbial-feeding animals and nitrogen availability in the soil. We established a 12-wk microcosm st…
Soil feedback does not explain mowing effects on vegetation structure in a semi-natural grassland
2009
Due to its ability to create aboveground conditions that favour plant diversity, mowing is often used to preserve the high conservation value of semi-natural species-rich grasslands. However, mowing can also affect belowground conditions. By decreasing plant carbon supply to soil, mowing can suppress the activity of soil decomposers, diminish plant nutrient availability and thus create a feedback on plant growth. In this study, we first documented the effects of three-year mowing on plant community structure in a species-rich grassland. We found that mowing decreased the total areal cover of woody plants and increased the total cover of leguminous forbs. At the species level, mowing further…
Response of total and nitrate-dissimilating bacteria to reduced N deposition in a spruce forest soil profile
2009
A field-scale manipulation experiment conducted for 16 years in a Norway spruce forest at Solling, Central Germany, was used to follow the long-term response of total soil bacteria, nitrate reducers and denitrifiers under conditions of reduced N deposition. N was experimentally removed from throughfall by a roof construction (‘clean rain plot’). We used substrate-induced respiration (SIR) to characterize the active fraction of soil microbial biomass and potential nitrate reduction to quantify the activity of nitrate reducers. The abundance of total bacteria, nitrate reducers and denitrifiers in different soil layers was analysed by quantitative PCR of 16S rRNA gene, nitrate reduction and de…
2,4-D impact on bacterial communities, and the activity and genetic potential of 2,4-D degrading communities in soil
2006
The key role of telluric microorganisms in pesticide degradation is well recognized but the possible relationships between the biodiversity of soil microbial communities and their functions still remain poorly documented. If microorganisms influence the fate of pesticides, pesticide application may reciprocally affect soil microorganisms. The objective of our work was to estimate the impact of 2,4-D application on the genetic structure of bacterial communities and the 2,4-D-degrading genetic potential in relation to 2,4-D mineralization. Experiments combined isotope measurements with molecular analyses. The impact of 2,4-D on soil bacterial populations was followed with ribosomal intergenic…
Frequent freeze-thaw cycles yield diminished yet resistant and responsive microbial communities in two temperate soils: a laboratory experiment
2010
Few studies have been conducted on adaptations of microbial communities to low and fluctuating temperatures using environmentally relevant conditions. In this study, six Himalayan and two temperate soils were selected as candidates for low-temperature/freeze-thaw (FT)-adapted and susceptible soils, respectively. Redundancy analysis with forward selection was used to create a model of environmental parameters explaining variability in the initial microbial abundance and 4 °C activities. The best predictor was soil carbon, explaining more than 74% of data variability (P=0.002), despite significant differences in the soil characteristics and environmental history. We tested the hypothesis that…
Stability of soil microbial structure and activity depends on microbial diversity
2013
Despite the central role of microbes in soil processes, empirical evidence concerning the effect of their diversity on soil stability remains controversial. Here, we addressed the ecological insurance hypothesis by examining the stability of microbial communities along a gradient of soil microbial diversity in response to mercury pollution and heat stress. Diversity was manipulated by dilution extinction approach. Structural and functional stabilities of microbial communities were assessed from patterns of genetic structure and soil respiration after the stress. Dilution led to the establishment of a consistent diversity gradient, as revealed by 454 sequencing of ribosomal genes. Diversity …
16S rDNA analysis for characterization of denitrifying bacteria isolated from three agricultural soils
2000
Bacteria capable of denitrification are spread among phylogenetically diverse groups. In the present investigation, molecular methods (amplified ribosomal DNA restriction analysis (ARDRA) and partial 16S rDNA gene sequencing) were used to determine the genetic diversity of culturable denitrifying soil bacteria. The purpose of this work was to study the microbial density and diversity of denitrifying communities isolated from two luvisols and a rendosol. The denitrifying bacterial density was significantly higher in the two luvisols (3x10(6) and 4x10(6) bacteria g(-1) dry soil) than in the rendosol (4x10(5) bacteria g(-1) dry soil). Denitrifying isolates from soils were grouped according to …
Molecular biomass and MetaTaxogenomic assessment of soil microbial communities as influenced by soil DNA extraction procedure
2011
Three soil DNA extraction procedures (homemade protocols and commercial kit) varying in their practicability were applied to contrasting soils to evaluate their efficiency in recovering: (i) soil DNA and (ii) bacterial diversity estimated by 16S rDNA pyrosequencing. Significant differences in DNA yield were systematically observed between tested procedures. For certain soils, 10 times more DNA was recovered with one protocol than with the others. About 15,000 sequences of 16S rDNA were obtained for each sample which were clustered to draw rarefaction curves. These curves, as well as the PCA ordination of community composition based on OTU clustering, did not reveal any significant differenc…
Influence of land-use intensity on the spatial distribution of N-cycling microorganisms in grassland soils
2011
A geostatistical approach using replicated grassland sites (10 m × 10 m) was applied to investigate the influence of grassland management, i.e. unfertilized pastures and fertilized mown meadows representing low and high land-use intensity (LUI), on soil biogeochemical properties and spatial distributions of ammonia-oxidizing and denitrifying microorganisms in soil. Spatial autocorrelations of the different N-cycling communities ranged between 1.4 and 7.6 m for ammonia oxidizers and from 0.3 m for nosZ-type denitrifiers to scales >14 m for nirK-type denitrifiers. The spatial heterogeneity of ammonia oxidizers and nirS-type denitrifiers increased in high LUI, but decreased for biogeochemical …