Search results for "Spacer"
showing 10 items of 247 documents
Assessing the use of the mitochondrial cox1 marker for use in DNA barcoding of red algae (Rhodophyta)
2011
The red algae, a remarkably diverse group of organisms, are difficult to identify using morphology alone. Following the proposal to use the mitochondrial cytochrome c oxidase subunit 1 (cox1) for DNA barcoding animals, we assessed the use of this, ne in the identification of red algae using 48 samples plus 31 sequences obtained from GenBank. The data set spanned six gene orders of red algae: the Bangiales, Ceramiales, Corallinales, Gigartinales, Gracilariales and Rhodymeniales. The results indicated that species could be discriminated. Intraspecific variation was between 0 and 4 bp over 539 bp analyzed except in Mastocarpus stellatus (0-14 bp) and Gracilaria gracilis (0-11 bp). Cryptic dive…
Culturable endophytic microbial communities in the circumpolar grass,Deschampsia flexuosain a sub-Arctic inland primary succession are habitat and gr…
2014
Summary Little is known about endophytic microbes in cold climate plants and how their communities are formed. We compared culturable putative endophytic bacteria and fungi in the ecologically important circumpolar grass, Deschampsia flexuosa growing in two successional stages of subarctic sand dune (68°29′N). Sequence analyses of partial 16S rRNA and internal transcribed spacer (ITS) sequences of culturable endophytes showed that diverse bacteria and fungi inhabit different tissues of D. flexuosa. A total of 178 bacterial isolates representing seven taxonomic divisions, Alpha, Beta and Gammaproteobacteria, Actinobacteria, Bacteroidetes, Firmicutes and Acidobacteria, and 30 fungal isolates …
Evolutionary significance of the invasion of introduced populations into the native range of Meconopsis cambrica
2011
The long history of the deliberate or accidental and human-mediated dispersal of flowering plants has led to the introduction of foreign genotypes of many species into areas of Europe hitherto occupied by potentially distinct native populations. Studies of the genetic and evolutionary consequences of such changes are handicapped by the difficulty of identifying the surviving native populations of many species in the absence of clear morphological differences. We investigated the relationship between putative native and introduced populations of the herbaceous perennial Meconopsis cambrica (Papaveraceae), as the isolated native populations of this species can be identified by historical and …
What is the origin of the Scottish populations of the European endemic Cherleria sedoides (Caryophyllaceae)?
2015
Cherleria sedoides L. (Minuartia sedoides (L.) Hiern) is a montane perennial which, with some species in Minuartia sect. Spectabiles, is more closely related to Scleranthus than to other Minuartia species and is therefore best restored to the reinstated and redefined genus Cherleria. Reconstruction of the ancestral area of the clade containing C. sedoides suggests that it evolved in the Alps or the Balkan peninsula. The species now has an unusual distribution, being present in the mountains of southern Europe and Scotland but absent from the Arctic. Three historical scenarios that might have led to the presence of the species in Scotland are outlined and tested by a molecular analysis compa…
Is Welsh Poppy,Meconopsis cambrica(L.) Vig. (Papaveraceae), truly aMeconopsis?
2011
AbstractSince the nineteenth century, the western European endemic Meconopsis cambrica has been regarded as the only European representative of the genus Meconopsis Vig. This genus, which is otherwise restricted to the Himalayas, differs from Papaver in having a style rather than a stigmatic disc. A phylogenetic reconstruction using 65 internal transcribed spacer sequences of 62 taxa of Old World Papaveroideae and three outgroup taxa shows that M. cambrica is not the closest relative of the remainder of Meconopsis but rather the closest sampled relative of Papaver s.str. This is consistent with morphological evidence which suggests that the style evolved independently in M. cambrica from a …
<p><strong><em>Diversispora valentina</em></strong><strong> (Diversisporaceae), a new species of arbuscular mycor…
2020
A new arbuscular mycorrhizal fungal species, Diversispora valentina, is described and illustrated. In the field, this species is associated with marine dunes located along the Mediterranean coast in eastern Spain. Spores of D. valentina occurred in sporocarps, in clusters, and singly in the soil or inside the roots of Ammophila arenaria (Poaceae), Elymus farctus (Poaceae), Otanthus maritimus (Asteraceae), and Echinophora spinosa (Apiaceae) in the six locations studied. A single-species culture of D. valentina was obtained using Trifolium repens as a host plant. The small subunit internal transcribed spacer and large subunit (SSU-ITS1-5.8S-ITS2-LSU) nrDNA sequences place the new species in t…
Hybridization and competition between the endangered sea marigold (Calendula maritima, Asteraceae) and a more common congener
2013
Occurrences of hybridization between the rare, endangered Sicilian endemic, Calendula maritima, and other congeners in the wild have been suspected by several authors, but never demonstrated. In San Cusumano (Trapani), one of the only three Sicilian mainland populations, C. maritima occurs in close proximity to the more common congener C. suffruticosa subsp. fulgida, and individuals morphologically intermediate between the two taxa have been observed. In order to determine whether hybridization is occurring at this site, and, if so, begin to assess the impact it could have on C. maritima, two independent tests of hybridity were conducted by studying (1) the pollen morphology and viability a…
Molecular and Morphological Differentiation of Two Similar Species of Accacoeliidae (Digenea):Accacladocoelium macrocotyleandA. nigroflavumfrom Sunfi…
2014
In a study of 106 sunfish, Mola mola (L.), from Mediterranean waters, 2,731 worms, belonging to 2 congeneric species of accacoeliids, Accacladocoelium macrocotyle (Diesing, 1858) Robinson, 1934 and Accacladocoelium nigroflavum (Rudolphi, 1819) Robinson, 1934 , were collected from the digestive system. It is often difficult to differentiate between these 2 species as they are sympatric and very similar; in fact, according to previous descriptions, the extent of the vitellarium is the only interspecific difference, described as extending posteriorly to the ovary in A. macrocotyle and as anterior to the anterior testis in A. nigroflavum. However, this diagnostic trait is not always valid; more…
Interrelationships of the Haploporinae (Digenea: Haploporidae): A molecular test of the taxonomic framework based on morphology
2009
The taxonomic framework of the Haploporidae is evaluated and the relationships within the Haploporinae are assessed for the first time at the generic level using molecular data. Partial 28S and complete ITS2 rDNA sequences from representatives of six of the nine recognised genera within the Haploporinae were analysed together with published sequences representing members of two haploporid subfamilies and of the closely related family Atractotrematidae. Molecular analyses revealed: (i) a close relationship between the Atractotrematidae and the Haploporidae; (ii) strong support for the monophyly of the Haploporinae, Dicrogaster and Saccocoelium, and the position of Ragaia within the Haplopori…
A microcosm experiment to evaluate the influence of location and quality of plant residues on residue decomposition and genetic structure of soil mic…
2007
The effects of location (soil surface vs. incorporated in soil) and nature of plant residues on degradation processes and indigenous microbial communities were studied by means of soil microcosms incubation in which the different soil zones influenced by decomposition i.e. residues, soil adjacent to residues (detritusphere) and distant soil unaffected by decomposition (bulk soil) were considered. Plant material decomposition, organic carbon assimilation by the soil microbial biomass and soil inorganic N dynamics were studied with 13 C labelled wheat straw and young rye. The genetic structure of the community in each soil zone were compared between residue locations and type by applying B- a…