Search results for "Spectrum Analysis"

showing 10 items of 287 documents

Perylene Derivatives As Useful SERRS Reporters, Including Multiplexing Analysis

2015

Five perylene bisimide (PBI) derivatives were designed and synthesized, on the basis of quantum-chemical calculations. The influence of halogen substituents on the shape and energy of the frontier orbitals and the Raman spectra were calculated, in the prospect use in surface-enhanced resonance Raman scattering (SERRS) studies. The corresponding experiments confirmed a very strong SERRS response in the presence of pristine (i.e., uncoated) gold nanoparticles. These spectra can be used for multiplexing measurements, namely measurements in which, by using a single laser excitation, one can recognize the simultaneous presence of several analytes.

Materials sciencemultiplexing analysis; perylene bisimides; Raman spectroscopy; SERRS; Imides; Molecular Structure; Perylene; Spectrum Analysis Raman; Materials Science (all)Analytical chemistrymultiplexing analysisPhotochemistryImidesSpectrum Analysis Ramanlaw.inventionsymbols.namesakechemistry.chemical_compoundlawMoleculeGeneral Materials Scienceperylene bisimidesImideperylene bisimideRamanmultiplexing analysiPeryleneMolecular StructureSpectrum AnalysisResonance (chemistry)LaserchemistryColloidal goldHalogenRaman spectroscopysymbolsSERRSMaterials Science (all)Raman spectroscopyRaman scatteringPerylene
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A DNA-nanoparticle actuator enabling optical monitoring of nanoscale movements induced by an electric field.

2018

Merging biological and non-biological matter to fabricate nanoscale assemblies with controllable motion and function is of great interest due to its potential application, for example, in diagnostics and biosensing. Here, we have constructed a DNA-based bionanoactuator that interfaces with biological and non-biological matter via an electric field in a reversibly controllable fashion. The read-out of the actuator is based on motion-induced changes in the plasmon resonance of a gold nanoparticle immobilized to a gold surface by single stranded DNA. The motion of the gold nanoparticle and thus the conformational changes of the DNA under varying electric field were analyzed by dark field spect…

Materials scienceta221Immobilized Nucleic AcidsPhysics::OpticsNanoparticleDNA Single-StrandedMetal NanoparticlesNanotechnology02 engineering and technology010402 general chemistrySpectrum Analysis Raman01 natural sciencesnanobiotechnologyBiokemia solu- ja molekyylibiologia - Biochemistry cell and molecular biologyNanoteknologia - NanotechnologyElectricityElectric fieldGeneral Materials ScienceBiotinylationSurface plasmon resonanceSpectroscopyQuantitative Biology::Biomoleculesta114Optical ImagingnanobiotekniikkaDNASurface Plasmon Resonance021001 nanoscience & nanotechnologyAvidin0104 chemical sciencesNanostructuresColloidal goldNucleic Acid ConformationnanohiukkasetnanoparticlesGold0210 nano-technologyActuatorBiosensorVoltageNanoscale
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In situ evidence for an ancient aqueous environment at Meridiani Planum, Mars.

2004

Sedimentary rocks at Eagle crater in Meridiani Planum are composed of fine-grained siliciclastic materials derived from weathering of basaltic rocks, sulfate minerals (including magnesium sulfate and jarosite) that constitute several tens of percent of the rock by weight, and hematite. Cross-stratification observed in rock outcrops indicates eolian and aqueous transport. Diagenetic features include hematite-rich concretions and crystal-mold vugs. We interpret the rocks to be a mixture of chemical and siliciclastic sediments with a complex diagenetic history. The environmental conditions that they record include episodic inundation by shallow surface water, evaporation, and desiccation. The …

Meridiani PlanumGeologic SedimentsExtraterrestrial EnvironmentGeochemistryMineralogyMarsWeatheringengineering.materialFerric CompoundsLifeConcretionExobiologyComposition of MarsSpacecraftgeographyMineralsMultidisciplinarygeography.geographical_feature_categorySulfatesSilicatesSpectrum AnalysisWaterDiagenesisVolcanic rockengineeringSedimentary rockSiliciclasticGeologySulfurScience (New York, N.Y.)
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Soils of Eagle crater and Meridiani Planum at the Opportunity Rover landing site.

2004

The soils at the Opportunity site are fine-grained basaltic sands mixed with dust and sulfate-rich outcrop debris. Hematite is concentrated in spherules eroded from the strata. Ongoing saltation exhumes the spherules and their fragments, concentrating them at the surface. Spherules emerge from soils coated, perhaps from subsurface cementation, by salts. Two types of vesicular clasts may represent basaltic sand sources. Eolian ripples, armored by well-sorted hematite-rich grains, pervade Meridiani Planum. The thickness of the soil on the plain is estimated to be about a meter. The flatness and thin cover suggest that the plain may represent the original sedimentary surface.

Meridiani PlanumRover Landing SiteGeologic SedimentsMineralsMultidisciplinaryExtraterrestrial EnvironmentOutcropSilicatesSpectrum AnalysisGeochemistryMineralogyMarsWaterHematiteFerric CompoundsImpact craterClastic rockvisual_artvisual_art.visual_art_mediumAeolian processesSedimentary rockMeridiani PlanumSpacecraftGraded beddingGeologyScience (New York, N.Y.)
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First Diastereoselective Synthesis of (−)-Methyl Thyrsiflorin A, (−)-Methyl Thyrsiflorin B Acetate, and (−)-Thyrsiflorin C

2000

An efficient procedure for the synthesis of scopadulan diterpenes, using (+)-podocarp-8(14)-en-13-one 13 as starting material, is reported. This procedure has been used for the diastereoselective synthesis of (-)-methyl thyrsiflorin A (8), (-)-methyl thyrsiflorin B acetate (9), and (-)-thyrsiflorin C (7). Key steps in our strategy are the intramolecular cyclopropanation of diazoketone 19 and the regioselective cleavage of the cyclopropane ring.

Methyl thyrsiflorin B acetatePlants MedicinalMolecular StructureCyclopropanationSpectrum AnalysisOrganic ChemistryRegioselectivityStereoisomerismRing (chemistry)Cleavage (embryo)Medicinal chemistryCyclopropanechemistry.chemical_compoundThyrsiflorin CchemistryIntramolecular forceDiterpenesThe Journal of Organic Chemistry
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Alignment-free, all-spliced fiber laser source for CARS microscopy based on four-wave-mixing

2012

An environmentally-stable low-repetition rate fiber oscillator is developed to produce narrow-bandwidth pulses with several tens of picoseconds duration. Based on this oscillator an alignment-free all-fiber laser for multi-photon microscopy is realized using in-fiber frequency conversion based on four-wave-mixing. Both pump and Stokes pulses for coherent anti-Stokes Raman scattering (CARS) microscopy are readily available from one fiber end, intrinsically overlapped in space and time, which drastically simplifies the experimental handling for the user. The complete laser setup is mounted on a home-built laser scanning microscope with small footprint. High-quality multimodal microscope image…

MicroscopyPhotonsMicroscopeMaterials scienceLaser scanningbusiness.industryLasersPhysics::OpticsArteriesAtherosclerosisSpectrum Analysis RamanLaserLipidsAtomic and Molecular Physics and Opticslaw.inventionFour-wave mixingOpticslawFiber laserMicroscopyHumansCoherent anti-Stokes Raman spectroscopyLaser power scalingCrystallizationbusinessOptics Express
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Tension Causes Unfolding of Intracellular Vimentin Intermediate Filaments

2020

Intermediate filament (IF) proteins are a class of proteins that constitute different filamentous structures in mammalian cells. As such, IF proteins are part of the load-bearing cytoskeleton and support the nuclear envelope. Molecular dynamics simulations show that IF proteins undergo secondary structural changes to compensate mechanical loads, which is confirmed by experimental in vitro studies on IF hydrogels. However, the structural response of intracellular IF to mechanical load is yet to be elucidated in cellulo. Here, in situ nonlinear Raman imaging combined with multivariate data analysis is used to quantify the intracellular secondary structure of the IF cytoskeletal protein viment…

MicroscopybiologyChemistryIntermediate FilamentsBiomedical EngineeringVimentinSpectrum Analysis RamanMechanotransduction CellularProtein Structure SecondaryGeneral Biochemistry Genetics and Molecular BiologyBiomaterialsMolecular dynamicsSelf-healing hydrogelsBiophysicsbiology.proteinHumansVimentinMechanotransductionIntermediate filamentCytoskeletonProtein secondary structureIntracellularHeLa CellsProtein UnfoldingAdvanced Biosystems
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Stable amorphous calcium carbonate is the main component of the calcium storage structures of the crustacean Orchestia cavimana.

2002

Amorphous calcium carbonate (ACC) is the least stable form of the six known phases of calcium carbonate. It is, however, produced and stabilized by a variety of organisms. In this study we examined calcium storage structures from the terrestrial crustacean Orchestia cavimana, in order to better understand their formation mode and function. By using X-ray diffraction, infrared and Raman spectroscopy, thermal analysis and elemental analysis, we determined that the mineral comprising these storage structures is amorphous calcium carbonate with small amounts of amorphous calcium phosphate (5%). We suggest that the use of amorphous calcium carbonate might be advantageous for these storage struct…

MineralSpectrophotometry InfraredMagnesiumMineralogychemistry.chemical_elementBiologyPhosphateSpectrum Analysis RamanAmorphous calcium carbonateAmorphous solidCalcium Carbonatechemistry.chemical_compoundCalcium carbonatechemistryChemical engineeringX-Ray DiffractionCrustaceaThermogravimetryAnimalsAmorphous calcium phosphateSolubilityGeneral Agricultural and Biological SciencesThe Biological bulletin
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UV‐Vis Spectroscopy Reveals a Correlation Between Y263 and BV Protonation States in Bacteriophytochromes

2019

Red-light photosensory proteins, phytochromes, link light activation to biological functions by interconverting between two conformational states. For this, they undergo large-scale secondary and tertiary changes which follow small-scale Z to E bond photoisomerization of the covalently bound bilin chromophore. The complex network of amino acid interactions in the chromophore-binding pocket plays a central role in this process. Highly conserved Y263 and H290 have been found to be important for the photoconversion yield, while H260 has been identified as important for bilin protonation and proton transfer steps. Here, we focus on the roles these amino acids are playing in preserving the chemi…

Models Molecular0301 basic medicinePhotoisomerizationProtein ConformationStereochemistryProtonation010402 general chemistry01 natural sciencesBiochemistry03 medical and health scienceschemistry.chemical_compoundProtein structureMoleculeCloning MolecularPhysical and Theoretical ChemistryBilinchemistry.chemical_classificationBinding SitesPhytochromeSpectrum AnalysisGene Expression Regulation BacterialGeneral MedicineHydrogen-Ion ConcentrationChromophore0104 chemical sciencesAmino acid030104 developmental biologychemistryDeinococcusPhytochromePhotochemistry and Photobiology
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Theoretical prediction of structural, vibrational and NMR parameters of plastic optical fiber (POF) material precursors. Cis and trans perhydro- and …

2014

Abstract Density functional theory (DFT) prediction of cis and trans perhydro- and perfluoro-2-methylene-4,5-dimethyl-1,3-dioxolanes structure, supported by vibrational analysis and calculation of multinuclear isotropic nuclear magnetic resonance (NMR) shieldings and indirect spin–spin couplings (SSCCs) was performed. The performance of the used methodology was verified on 1,3-dioxolane selected as model compound. The structures of hydrogenated and fluorinated monomers of POF materials were calculated using B3LYP and BLYP density functionals combined with 6-311 ++ G(3df,2pd) basis set. The BLYP/6-311++G(3df,2pd) level of theory was suggested for vibrational analysis. Gauge independent atomi…

Models Molecular5-dimethyl-1Magnetic Resonance Spectroscopy3-dioxolaneMolecular ConformationSpectrum Analysis RamanDFTVibrationchemistry.chemical_compoundAtomic orbitalIsomerismComputational chemistrySpectroscopy Fourier Transform InfraredMaterials ChemistryPOFPhysical and Theoretical ChemistryMethylenePlastic optical fiberSpectroscopyBasis setOptical FibersCoupling constantChemistryIsotropyperfluoro-2-methylene-4DioxolanesComputer Graphics and Computer-Aided DesignGIAO NMRQuantum TheoryDensity functional theoryPlasticsCis–trans isomerismJournal of Molecular Graphics and Modelling
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