Search results for "Spiders"

showing 10 items of 41 documents

Hemocyanin conformational changes associated with SDS-induced phenol oxidase activation.

2007

The enzymatic activity of phenoloxidase is assayed routinely in the presence of SDS. Similar assay conditions elicit phenoloxidase activity in another type 3 copper protein, namely hemocyanin, which normally functions as an oxygen carrier. The nature of the conformational changes induced in type 3 copper proteins by the denaturant SDS is unknown. This comparative study demonstrates that arthropod hemocyanins can be converted from being an oxygen carrier to a form which exhibits phenoloxidase activity by incubation with SDS, with accompanying changes in secondary and tertiary structure. Structural characterisation, using various biophysical methods, suggests that the micellar form of SDS is …

Copper proteinmedicine.medical_treatmentBiophysicschemistry.chemical_elementBiochemistryOxygenProtein Structure SecondaryAnalytical ChemistryScorpionsEnzyme activatorCatalytic DomainHorseshoe CrabsmedicineAnimalsMolecular Biologychemistry.chemical_classificationOxidase testMonophenol MonooxygenaseSodium Dodecyl SulfateHemocyaninIsothermal titration calorimetrySpidersProtein tertiary structureProtein Structure TertiaryEnzyme ActivationEnzymechemistryBiochemistryHemocyaninsCopperBiochimica et biophysica acta
researchProduct

Fluorescence labels as sensors for oxygen binding of arthropod hemocyanins

2004

The molecular basis of high cooperativity in multi-subunit proteins is still unknown in most cases. Oxygen binding by multi-subunit hemocyanins produces two intrinsic spectroscopic signals which are, however, either limited to the UV or are very weak. Here we demonstrate that fluorescence labels emitting in the visible can be used as sensors for cooperative oxygen binding of hemocyanins. Fluorescence resonance energy transfer to the oxygenated active sites quenches the emission of the labels by roughly 50% upon oxygenation of the protein. The labels give strong and photo-stable emission, allowing imaging of single hemocyanin molecules. Therefore, this study opens up a new perspective for in…

Energy transfermedicine.medical_treatmentBiophysicsAnalytical chemistrychemistry.chemical_elementCooperativityBiochemistryOxygenFluorescence Resonance Energy TransfermedicineAnimalsMoleculePalinuridaeArthropodsMolecular BiologyFluorescent DyesChemistrySpidersHemocyaninCell BiologyFluorescenceOxygenSpectrometry FluorescenceFörster resonance energy transferEnergy TransferHemocyaninsBiophysicsOxygen bindingBiochemical and Biophysical Research Communications
researchProduct

Automatic image-based identification and biomass estimation of invertebrates

2020

1. Understanding how biological communities respond to environmental changes is a key challenge in ecology and ecosystem management. The apparent decline of insect populations necessitates more biomonitoring but the time-consuming sorting and expert-based identification of taxa pose strong limitations on how many insect samples can be processed. In turn, this affects the scale of efforts to map and monitor invertebrate diversity altogether. Given recent advances in computer vision, we propose to enhance the standard human expert-based identification approach involving manual sorting and identification with an automatic image-based technology. 2. We describe a robot-enabled image-based ident…

FOS: Computer and information sciences0106 biological sciencesclassification (action)Computer Science - Machine Learninghahmontunnistus (tietotekniikka)Computer scienceImage qualityComputer Vision and Pattern Recognition (cs.CV)Computer Science - Computer Vision and Pattern Recognitionclassificationsmodelling (creation related to information)neuroverkot01 natural sciencesConvolutional neural networkcomputer visionMachine Learning (cs.LG)remote sensingAbundance (ecology)Statistics - Machine Learningkonenäköinsectstunnistaminenbiodiversitysystematiikka (biologia)Ecological ModelingSortingselkärangattomatneural networksmuutosjohtaminenautomated pattern recognitionIdentification (information)machine learningkoneoppiminenclassificationEcosystem managementhämähäkitrecognitionmallintaminenneural networks (information technology)Machine Learning (stat.ML)010603 evolutionary biologyspidersidentifiointilajitsystematicsluokituksetEcology Evolution Behavior and Systematicsluokitus (toiminta)tarkkuusbusiness.industry010604 marine biology & hydrobiologyDeep learningPattern recognitiontypes and speciesidentification (recognition)15. Life on land113 Computer and information sciencesecosystems (ecology)invertebratesbiodiversiteettiekosysteemit (ekologia)hyönteisetidentificationprecisionkaukokartoitusArtificial intelligencechange management (leadership)businessScale (map)
researchProduct

Lipoprotein-induced phenoloxidase-activity in tarantula hemocyanin.

2015

Phenoloxidases play vital roles in invertebrate innate immune reactions, wound closure and sclerotization processes in arthropods. In chelicerates, where phenoloxidases are lacking, phenoloxidase-activity can be induced in the oxygen carrier hemocyanin in vitro by proteolytic cleavage, incubation with the artificial inducer SDS, or lipids. The role of protein-protein interaction has up to now received little attention. This is remarkable, as lipoproteins - complexes of proteins and lipids - are present at high concentrations in arthropod hemolymph. We characterized the three lipoproteins present in tarantula hemolymph, two high-density lipoproteins and one very high-density lipoprotein, and…

Innate immune systemChemistryMonophenol Monooxygenasemedicine.medical_treatmentLipoproteinsBiophysicsHemocyaninSpidersCleavage (embryo)BiochemistryMicelleIn vitroAnalytical ChemistryArthropod ProteinsBiochemistryMultiprotein ComplexesHemolymphHemocyaninsmedicineAnimalslipids (amino acids peptides and proteins)InducerMolecular BiologyLipoproteinBiochimica et biophysica acta
researchProduct

Quaternary and subunit structure of Calliphora arylphorin as deduced from electron microscopy, electrophoresis, and sequence similarities with arthro…

1992

Arylphorin was purified from larvae of the blowfly Calliphora vicina and studied in its oligomeric form and after dissociation at pH 9.6 into native subunits. In accordance with earlier literature, it was electrophoretically shown to be a 500 kDa hexamer (1 x 6) consisting of 78 kDa polypeptides (= subunits). Electron micrographs of negatively stained hexamers show a characteristic curvilinear, equilateral triangle of 12 nm in diameter (top view) and a rectangle measuring 10 x 12 nm (side view). Alternatively, particles in the top view orientation exhibit a roughly circular shape 12 nm in diameter. Crossed immunoelectrophoresis revealed the presence of a major subunit type; the nature of a …

Insectaanimal structuresCalliphora vicinaProtein ConformationPhysiologyStereochemistryProtein subunitmedicine.medical_treatmentMolecular Sequence DataBiologyRandom hexamerBiochemistryCalliphoraEndocrinologyHemolymphmedicineAnimalsAmino Acid SequenceEcology Evolution Behavior and SystematicsGlycoproteinsSequence Homology Amino AcidProtein primary structureSpidersHemocyaninbiology.organism_classificationNephropidaeMicroscopy ElectronBiochemistryInsect HormonesLarvaHemocyaninsInsect ProteinsElectrophoresis Polyacrylamide GelAnimal Science and ZoologyProtein quaternary structureJournal of Comparative Physiology B
researchProduct

Species cohesion despite extreme inbreeding in a social spider.

2011

Colonial social spiders experience extreme inbreeding and highly restricted gene flow between colonies; processes that question the genetic cohesion of geographically separated populations and which could imply multiple origins from predecessors with limited gene flow. We analysed species cohesion and the potential for long-distance dispersal in the social spider Stegodyphus dumicola by studying colony structure in eastern South Africa and the cohesion between this population and Namibian populations previously published. Data from both areas were (re)analysed for historic demographic parameters. Eastern South African S. dumicola were closely related to an east Namibian lineage, showing coh…

Lineage (evolution)PopulationMolecular Sequence DataPopulation DynamicsColonialismDNA MitochondrialGene flowSouth AfricaSpecies SpecificityCohesion (geology)AnimalsCluster AnalysisInbreedingeducationSocial BehaviorEcology Evolution Behavior and SystematicsDemographyeducation.field_of_studyLikelihood FunctionsbiologyBase SequenceModels GeneticEcologyGenetic VariationSpidersSequence Analysis DNAbiology.organism_classificationNamibiaGenetics PopulationHaplotypesBiological dispersalInbreedingSocial spiderJournal of evolutionary biology
researchProduct

Cooperative Transition in the Conformation of 24-Mer Tarantula Hemocyanin upon Oxygen Binding

2005

Hemocyanins are large respiratory proteins of arthropods and mollusks, which bind oxygen with very high cooperativity. Here, we investigated the relationship between oxygen binding and structural changes of the 24-mer tarantula hemocyanin. Oxygen binding of the hemocyanin was detected following the fluorescence intensity of the intrinsic tryptophans. Under the same conditions, structural changes were monitored by the non-covalently bound fluorescence probe Prodan (6-propionyl-2-(dimethylamino)-naphthalene), which is very sensitive to its surroundings. Upon oxygen binding of the hemocyanin a red shift of 5 nm in the emission maximum of the label was observed. A comparison of oxygen binding c…

Macromolecular SubstancesProtein ConformationPartial Pressuremedicine.medical_treatmentAllosteric regulationMolecular ConformationAnalytical chemistrychemistry.chemical_elementchemical and pharmacologic phenomenaCooperativitycomplex mixturesBiochemistryOxygenProtein structure2-NaphthylaminemedicineAnimalsBinding siteMolecular BiologyBinding SitesChemistryTryptophanSpidersHemocyaninCell BiologyFluorescenceOxygenSpectrometry FluorescenceMicroscopy FluorescenceModels ChemicalSpectrophotometryHemocyaninsBiophysicsAllosteric SiteOxygen bindingProtein BindingJournal of Biological Chemistry
researchProduct

Female control of paternity in the sexually cannibalistic spider Argiope keyserlingi.

2000

Sexual conflict theory predicts an antagonistic coevolution, with each sex evolving adaptations and counter-adaptations to overcome a temporary dominance of the other sex over the control of paternity. Polyandry allows sexual selection to operate after mating has commenced, with male and female interests competing for control of fertilization. There are numerous examples of male control of paternity, but few studies have unambiguously revealed female control. Attributing variance in paternity to females is often difficult since male and female influences cannot be separated unambiguously. However, we show that polyandrous female orb-web spiders Argiope keserlingi (Arancidae) control the pat…

MaleAntagonistic CoevolutionZoologyModels BiologicalGeneral Biochemistry Genetics and Molecular BiologySexual conflictSexual Behavior AnimalAnimalsCannibalismSperm competitionGeneral Environmental ScienceGeneral Immunology and MicrobiologybiologyEcologyReproductionSpidersGeneral MedicineArgiope keyserlingibiology.organism_classificationFemale sperm storageSexual selectionSexual cannibalismFemaleArgiopeGeneral Agricultural and Biological SciencesResearch ArticleProceedings. Biological sciences
researchProduct

Phylogeny of entelegyne spiders: Affinities of the family Penestomidae (NEW RANK), generic phylogeny of Eresidae, and asymmetric rates of change in s…

2010

Penestomine spiders were first described from females only and placed in the family Eresidae. Discovery of the male decades later brought surprises, especially in the morphology of the male pedipalp, which features (among other things) a retrolateral tibial apophysis (RTA). The presence of an RTA is synapomorphic for a large clade of spiders exclusive of Eresidae. A molecular data matrix based on four loci was constructed to test two alternative hypotheses: (1) penestomines are eresids and the RTA is convergent, or (2) penestomines belong within the RTA clade. Taxon sampling concentrated on the Eresidae and the RTA clade, especially outside of the Dionycha and Lycosoidea. Evolution of the c…

MaleCybaeidaeZoologyEvolution MolecularEntelegynaeLycosoideaRNA Ribosomal 28SRNA Ribosomal 18SGeneticsAnimalsMolecular BiologyPhylogenyEcology Evolution Behavior and SystematicsLikelihood FunctionsModels GeneticbiologyAraneoideaBayes TheoremSpidersSequence Analysis DNAbiology.organism_classificationAgelenidaeFemaleCribellumDictynidaeSequence AlignmentAmaurobiidaeMolecular Phylogenetics and Evolution
researchProduct

Negatively condition dependent predation cost of a positively condition dependent sexual signalling.

2006

Predation is considered as an important factor constraining the expression of sexual signals. Nevertheless, direct quantitative evidence for predation provoking significant viability costs on individuals signalling at high rates is scarce. Moreover, it is unclear whether high rate signallers are able to balance presumably increased predation costs. We examined whether a condition dependent audible sexual signal, drumming, makes Hygrolycosa rubrofasciata male spiders more prone to predation by pied flycatchers (Ficedula hypoleuca), and whether sexual signalling rate is related to escaping ability once attacked. When birds were given a choice between two spider males manipulated to drum eithe…

MaleSpiderbiologyEcologymedia_common.quotation_subjectFicedulaZoologyEscape responseSpidersbiology.organism_classificationPredationSongbirdsSexual Behavior AnimalSignallingEscape ReactionSexual selectionPredatory BehaviorAnimalsFemaleReproductionCondition dependentEcology Evolution Behavior and Systematicsmedia_commonSignal TransductionJournal of evolutionary biology
researchProduct