Search results for "Statistic"
showing 10 items of 12520 documents
KINETICS OF POLYMER EJECTION FROM CAPSID CONFINEMENT: SCALING CONSIDERATIONS AND COMPUTER EXPERIMENT
2012
We investigate the ejection dynamics of a flexible polymer chain out of confined environment by means of scaling considerations and Monte Carlo simulations. Situations of this kind arise in different physical contexts, including a flexible synthetic polymer partially confined in a nanopore and a viral genome partially ejected from its capsid. In the case of cylindric confinement the entropic driving force which pulls the chain out of the pore is argued to be constant once a few persistent lengths are out of the pore. We demonstrate that in this case the ejection dynamics follows a [Formula: see text]-law with elapsed time t. The mean ejection time τ depends nonmonotonically on chain length…
Polymer dynamics in time-dependent periodic potentials.
2008
Dynamics of a discrete polymer in time-dependent external potentials is studied with the master equation approach. We consider both stochastic and deterministic switching mechanisms for the potential states and give the essential equations for computing the stationary state properties of molecules with internal structure in time-dependent periodic potentials on a lattice. As an example, we consider standard and modified Rubinstein-Duke polymers and calculate their mean drift and effective diffusion coefficient in the two-state non-symmetric flashing potential and symmetric traveling potential. Rich non-linear behavior of these observables is found. By varying the polymer length, we find cur…
Scaling behavior of topologically constrained polymer rings in a melt
2014
Large scale molecular dynamics simulations on graphic processing units (GPUs) are employed to study the scaling behavior of ring polymers with various topological constraints in melts. Typical sizes of rings containing $3_1$, $5_1$ knots and catenanes made up of two unknotted rings scale like $N^{1/3}$ in the limit of large ring sizes $N$. This is consistent with the crumpled globule model and similar findings for unknotted rings. For small ring lengths knots occupy a significant fraction of the ring. The scaling of typical ring sizes for small $N$ thus depends on the particular knot type and the exponent is generally larger than 0.4.
Pulling Single Adsorbed Bottle-Brush Polymers off a Flat Surface: A Monte Carlo Simulation
2013
Force versus extension behavior of flexible chains and semiflexible bottle-brush polymers adsorbed from a good solvent on a planar substrate is studied by Monte Carlo simulation of the bond fluctua...
Recent Developments in Monte Carlo Simulations of Lattice Models for Polymer Systems
2008
A brief review is given of methodological advances made during the past decade with the Monte Carlo sampling of equilibrium properties of simple lattice models of polymer systems, and representative applications of these new algorithms are summarized. These algorithms include Wang−Landau (WL) sampling, the pruned-enriched Rosenbluth method (PERM), and topology violating dynamic Monte Carlo algorithms such as combinations of local moves, slithering snake moves, and “double bridging” moves for the bond fluctuation model. The applications mentioned concern phase-transition-like phenomena of single chains (collapse and crystallization in bad solvents; interplay of collapse and adsorption; escap…
Stimuli-responsive brushes with active minority components: Monte Carlo study and analytical theory
2015
Using a combination of analytical theory, Monte Carlo simulations, and three dimensional self-consistent field calculations, we study the equilibrium properties and the switching behavior of adsorption-active polymer chains included in a homopolymer brush. The switching transition is driven by a conformational change of a small fraction of minority chains, which are attracted by the substrate. Depending on the strength of the attractive interaction, the minority chains assume one of two states: An exposed state characterized by a stem-crown-like conformation, and an adsorbed state characterized by a flat two-dimensional structure. Comparing the Monte Carlo simulations, which use an Edwards-…
Glass transition of polymer melts: Test of theoretical concepts by computer simulation.
2003
Abstract Polymers are good glass formers and allow for the study of melts near the glass transition in (meta-)stable equilibrium. Theories of the glass transition imply such an equilibrium and can, hence, be tested by the study of polymer melts. After a brief summary of the basic experimental facts about the glass transition in polymers, the main theoretical concepts are reviewed: mode coupling theory (MCT), entropy theory, free-volume theory, the idea of a growing length describing the size of cooperative regions, etc. Then, two basic coarse-grained models of polymers are described, which have been developed aiming at a test of these concepts. The first model is the bond-fluctuation model …
Adsorption Transition of a Polymer Chain at a Weakly Attractive Surface: Monte Carlo Simulation of Off-Lattice Models
2002
A bead-spring model of a polymer chain with one end attached to a wall is studied by Monte Carlo simulations for chain lengths 16 ≤ N ≤ 256. Two types of adsorption potentials, 9-3 and 10-4 Lennard-Jones (LJ) potentials, between the effective monomers and the wall are assumed. For both cases the adsorption transition where the chain changes its asymptotic statistical properties from a three-dimensional to a two-dimensional configuration is located using a scaling analysis. It is shown that the crossover exponent φ = 0.50 ± 0.02 is the same for both LJ potentials. This value is compatible with recent theoretical predictions and simulation results for lattice models with short-range wall pote…
Interfaces between coexisting phases in polymer mixtures: What can we learn from Monte Carlo simulations?
1999
Symmetric binary polymer mixtures are studied by Monte Carlo simulation of the bond fluctuation model, considering both interfaces between coexisting bulk phases and interfaces confined in thin films. It is found that the critical behavior of interfacial tension and width is compatible with that of the Ising model, as expected from the universality principle. In the strong segregation limit, only qualitative but not quantitative agreement with the self-consistent field (SCF) theory is found. It is argued that the SCF theory requires √ 6 X √D for short-range forces, in agreement with experiment.
Computer simulation of macromolecular materials
1988
Computer simulation of model systems with Monte Carlo methods enables the detailed study of structure and thermodynamic properties of these systems and thus constitutes a link between analytic theory and experiment. Typical applications that are discussed include polymer blends, dynamics of local motions in polymer melts, and the adsorption of polymers on walls.