Search results for "Statistical physics"

showing 10 items of 1402 documents

Multitype spatial point patterns with hierarchical interactions.

2001

Multitype spatial point patterns with hierarchical interactions are considered. Here hierarchical interaction means directionality: points on a higher level of hierarchy affect the locations of points on the lower levels, but not vice versa. Such relations are common, for example, in ecological communities. Interacting point patterns are often modeled by Gibbs processes with pairwise interactions. However, these models are inherently symmetric, and the hierarchy can be acknowledged only when interpreting the results. We suggest the following in allowing the inclusion of the hierarchical structure in the model. Instead of regarding the pattern as a realization of a stationary multivariate po…

Statistics and ProbabilityLikelihood FunctionsBiometryModels StatisticalGeneral Immunology and MicrobiologyHierarchy (mathematics)AntsApplied MathematicsStructure (category theory)UnivariateGeneral MedicineType (model theory)General Biochemistry Genetics and Molecular BiologyPoint processCombinatoricsSpecies SpecificityMultivariate AnalysisAnimalsPairwise comparisonPoint (geometry)Statistical physicsGeneral Agricultural and Biological SciencesRealization (probability)EcosystemMathematicsBiometrics
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Fractal eigenstates in disordered systems

1990

Abstract The wave functions of the non-interacting electrons in disordered systems described by a tight-binding model with site-diagonal disorder are investigated by means of the inverse participation ratio. The wave functions are shown to be fractal objects. In three-dimensional samples, a critical fractal dimension can be defined for the mobility edge in the band centre, which yields the mobility edge trajectory in the whole energy range in good agreement with previous calculations based on the investigation of the exponentially decaying transmission coefficient.

Statistics and ProbabilityMathematical analysisInverseElectronCondensed Matter PhysicsFractal dimensionsymbols.namesakeFractalFractal derivativesymbolsTransmission coefficientStatistical physicsWave functionHamiltonian (quantum mechanics)MathematicsPhysica A: Statistical Mechanics and its Applications
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Mass-flux-based outlet boundary conditions for the lattice Boltzmann method

2009

We present outlet boundary conditions for the lattice Boltzmann method. These boundary conditions are constructed with a mass-flux-based approach. Conceptually, the mass-flux-based approach provides a mathematical framework from which specific boundary conditions can be derived by enforcing given physical conditions. The object here is, in particular, to explain the mass-flux-based approach. Furthermore, we illustrate, transparently, how boundary conditions can be derived from the emerging mathematical framework. For this purpose, we derive and present explicitly three outlet boundary conditions. By construction, these boundary conditions have an apparent physical interpretation which is fu…

Statistics and ProbabilityMathematical analysisMason–Weaver equationBoundary conformal field theoryStatistical and Nonlinear PhysicsDifferent types of boundary conditions in fluid dynamicsSingular boundary methodBoundary knot methodBoundary conditions in CFDFree boundary problemBoundary value problemStatistical physicsStatistics Probability and UncertaintyMathematicsJournal of Statistical Mechanics: Theory and Experiment
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Bayesian analysis of a Gibbs hard-core point pattern model with varying repulsion range

2014

A Bayesian solution is suggested for the modelling of spatial point patterns with inhomogeneous hard-core radius using Gaussian processes in the regularization. The key observation is that a straightforward use of the finite Gibbs hard-core process likelihood together with a log-Gaussian random field prior does not work without penalisation towards high local packing density. Instead, a nearest neighbour Gibbs process likelihood is used. This approach to hard-core inhomogeneity is an alternative to the transformation inhomogeneous hard-core modelling. The computations are based on recent Markovian approximation results for Gaussian fields. As an application, data on the nest locations of Sa…

Statistics and ProbabilityMathematical optimizationGaussianBayesian probabilityBayesian analysisMarkov processRegularization (mathematics)symbols.namesakeGaussian process regularisationPERFECT SIMULATIONRange (statistics)Statistical physicsGaussian processMathematicsta113ta112Random fieldApplied MathematicsInhomogeneousSand Martin's nestsTRANSFORMATIONHard-core point processComputational MathematicsTransformation (function)Computational Theory and MathematicssymbolsINFERENCECOMPUTATIONAL STATISTICS AND DATA ANALYSIS
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Stepping molecular motor amid Lévy white noise

2015

We consider a model of a stepping molecular motor consisting of two connected heads. Directional motion of the stepper takes place along a one-dimensional track. Each head is subject to a periodic potential without spatial reflection symmetry. When the potential for one head is switched on, it is switched off for the other head. Additionally, the system is subject to the influence of symmetric, white Lévy noise that mimics the action of external random forcing. The stepper exhibits motion with a preferred direction which is examined by analyzing the median of the displacement of a midpoint between the positions of the two heads. We study the modified dynamics of the stepper by numerical sim…

Statistics and ProbabilityModels MolecularPhysicsMolecular Motor ProteinsMathematical analysisCondensed Matter PhysicWhite noiseMidpointDisplacement (vector)MotionNoiseReflection symmetryMolecular motorHead (vessel)Computer SimulationStatistical physicsStepperStatistical and Nonlinear Physic
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Wait-and-switch stochastic model of the non-Debye relaxation. Derivation of the Burr survival probability

2006

Abstract Stochastic mechanism of relaxation, in which a dipole waits until a favourable condition for reorientation exists, is discussed. Assuming that an imposed direction of a dipole moment may be changed when a migrating defect reaches the dipole, we present a mathematically rigorous scheme relating the local random characteristics of a macroscopic system to its effective relaxation behaviour. We derive a relaxation function (the Burr survival probability) that is characterized by the stretched exponential or the power-law behaviour.

Statistics and ProbabilityMoment (mathematics)DipoleAnomalous diffusionStochastic modellingTransition dipole momentRelaxation (physics)Statistical physicsFunction (mathematics)Condensed Matter PhysicsMathematicsExponential functionPhysica A: Statistical Mechanics and its Applications
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Multicanonical Monte Carlo simulations

1998

Canonical Monte Carlo simulations of disordered systems like spin glasses and systems undergoing first-order phase transitions are severely hampered by rare event states which lead to exponentially diverging autocorrelation times with increasing system size and hence to exponentially large statistical errors. One possibility to overcome this problem is the multicanonical reweighting method. Using standard local update algorithms it could be demonstrated that the dependence of autocorrelation times on the system size V is well described by a less divergent power law, τ∝Vα, with 1<α<3, depending on the system. After a brief review of the basic ideas, combinations of multicanonical reweighting…

Statistics and ProbabilityMultigrid methodMonte Carlo methodAutocorrelationExponentWang and Landau algorithmStatistical physicsCondensed Matter PhysicsRandom walkPower lawOrder of magnitudeMathematicsPhysica A: Statistical Mechanics and its Applications
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Uncertainty in 2-point correlation function estimators and baryon acoustic oscillation detection in galaxy surveys

2012

Abstract We study the uncertainty in different two-point correlation function (2PCF) estimators in currently available galaxy surveys. This is motivated by the active subject of using the baryon acoustic oscillations (BAOs) feature in the correlation function as a tool to constrain cosmological parameters, which requires a fine analysis of the statistical significance. We discuss how estimators are affected by both the uncertainty in the mean density n and the integral constraint 1 V 2 ∫ V 2 ξ ˆ ( r ) d 3 r = 0 which necessarily causes a bias. We quantify both effects for currently available galaxy samples using simulated mock catalogues of the Sloan Digital Sky Survey (SDSS) following a lo…

Statistics and ProbabilityNumber density010308 nuclear & particles physicsmedia_common.quotation_subjectDark matterEstimatorAstrophysics::Cosmology and Extragalactic Astrophysics01 natural sciencesRedshiftGalaxyBaryonSky0103 physical sciencesBaryon acoustic oscillationsStatistical physics010303 astronomy & astrophysicsmedia_commonMathematicsStatistical Methodology
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A Hooke's law-based approach to protein folding rate

2014

Kinetics is a key aspect of the renowned protein folding problem. Here, we propose a comprehensive approach to folding kinetics where a polypeptide chain is assumed to behave as an elastic material described by the Hooke[U+05F3]s law. A novel parameter called elastic-folding constant results from our model and is suggested to distinguish between protein with two-state and multi-state folding pathways. A contact-free descriptor, named folding degree, is introduced as a suitable structural feature to study protein-folding kinetics. This approach generalizes the observed correlations between varieties of structural descriptors with the folding rate constant. Additionally several comparisons am…

Statistics and ProbabilityPROTDCALStructure analysisGeneral Biochemistry Genetics and Molecular BiologyArticleProtein Structure SecondaryAmino acid sequencesymbols.namesakeProtein structureEnergeticsFeature (machine learning)Statistical physicsProtein foldingTheoretical modelProtein secondary structureReaction kineticsGeneral Immunology and MicrobiologyChemical modelApplied MathematicsProteinHooke's lawModelingProteinsGeneral MedicineDNAComputer simulationElasticityFolding degreeFolding (chemistry)ChemistryKineticsModels ChemicalModeling and SimulationPeptidesymbolsProtein structureElastic folding constantPhysical chemistryProtein secondary structureThermodynamicsProtein foldingDownhill foldingPolypeptideGeneral Agricultural and Biological SciencesConstant (mathematics)Folding kinetics
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On multi-scale percolation behaviour of the effective conductivity for the lattice model

2015

Macroscopic properties of heterogeneous media are frequently modelled by regular lattice models, which are based on a relatively small basic cluster of lattice sites. Here, we extend one of such models to any cluster's size kxk. We also explore its modified form. The focus is on the percolation behaviour of the effective conductivity of random two- and three-phase systems. We consider only the influence of geometrical features of local configurations at different length scales k. At scales accessible numerically, we find that an increase in the size of the basic cluster leads to characteristic displacements of the percolation threshold. We argue that the behaviour is typical of materials, w…

Statistics and ProbabilityPercolation critical exponentsStatistical Mechanics (cond-mat.stat-mech)FOS: Physical sciencesRegular latticePercolation thresholdMulti-scale analysis; Percolation; Lattice model; Effective mediumConductivityCondensed Matter PhysicsLattice (order)Continuum percolation theoryStatistical physicsCondensed Matter - Statistical MechanicsMathematics
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