Search results for "Suberites"

showing 10 items of 135 documents

Src proteins/src genes: from sponges to mammals

2004

The genome of marine sponge Suberites domuncula, a member of the most ancient and most simple metazoan phylum Porifera, encodes at least five genes for Src-type proteins, more than, i.e., Caenorhabditis elegans or Drosophila melanogaster (two in each). Three proteins, SRC1SD, SRC2SD and SRC3SD, were fully characterized. The overall homology (identity+similarity) among the three S. domuncula Srcs (68-71%) is much lower than the sequence conservation between orthologous Src proteins from freshwater sponges (82-85%). It is therefore very likely that several src genes/proteins were already present in the genome of Urmetazoa, the hypothetical metazoan ancestor. We have identified in the S. domun…

DNA Complementaryanimal structuresMolecular Sequence DataProto-Oncogene Proteins pp60(c-src)SH2 domainHomology (biology)SH3 domainEvolution Molecularsrc Homology DomainsExonGeneticsAnimalsProtein IsoformsAmino Acid SequenceCloning MolecularGenePhylogenyMammalsGeneticsSequence Homology Amino AcidbiologyIntronDNASequence Analysis DNAGeneral Medicinebiology.organism_classificationIntronsPoriferaSuberites domunculaSequence AlignmentProto-oncogene tyrosine-protein kinase SrcGene
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Siliceous spicules in marine demosponges (example Suberites domuncula)

2005

All metazoan animals comprise a body plan of different complexity. Since-especially based on molecular and cell biological data-it is well established that all metazoan phyla, including the Porifera (sponges), evolved from a common ancestor the search for common, basic principles of pattern formation (body plan) in all phyla began. Common to all metazoan body plans is the formation of at least one axis that runs from the apical to the basal region; examples for this type of organization are the Porifera and the Cnidaria (diploblastic animals). It seems conceivable that the basis for the formation of the Bauplan in sponges is the construction of their skeleton by spicules. In Demospongiae (w…

EXPRESSIONCnidariaSpiculeGENESPROTEINGeneral Physics and AstronomyPaleontologySponge spiculeStructural BiologyevolutionSturtian glaciationAnimalsGeneral Materials ScienceDEPOSITIONbiosilicaBody PatterningbiologyPhylumsilicateinsilica formationSPONGESCell BiologySilicon Dioxidebiology.organism_classificationCathepsinsSuberites domunculaspiculesPoriferaSuberites domunculaBody planEvolutionary biologyMORPHOGENESISSuberitesMicron
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The multixenobiotic resistance mechanism in the marine sponge Suberites domuncula: its potential applicability for the evaluation of environmental po…

1996

Experiments were carried out with the marine sponge Suberites domuncala to determine whether sponges may express - like mammalian tumor cells a multidrug-like transporter system. The results demonstrate that sponge cells possess such a protective system termed multixenobiotic resistance (MXR) pump or P-glycoprotein-like pump, The protein was identified by antisera for the mammalian P170 multidrug resistance protein as a 130 kDa molecule, Binding studies were performed with H-3-vincristine (H-3-VCR) and membrane vesicles ; this process is ATP-dependent and inhibited by verapamil, which is known to reverse the multidrug-resistance phenotype in mammalian systems, Accumulation experiments were …

EcologybiologyEnvironmental pollutionTransporterDiaphragm pumpAquatic Sciencebiology.organism_classificationsponge cells ; multixenobiotic resistance ; binding ; accumulation ; pollutionMicrobiologySuberites domunculaMultiple drug resistanceSpongeBiochemistryExtracellularEcology Evolution Behavior and SystematicsFunction (biology)Marine Biology
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Molecular response of the sponge Suberites domuncula to bacterial infection

2001

The aim of this study was the documentation of the molecular immune response of Suberites domuncula upon bacterial infection. Additionally, the bacteria that are naturally present in the sponge after prolonged aquarium maintenance were characterized. After 6 months of maintenance of S. domuncula in seawater aquaria, only one bacterial 16S rDNA sequence could be recovered, which belongs to the genus Pseudomonas. Concomitantly, morphologically uniform bacteria were found encapsulated in bacteriocytes. These findings indicate that certain bacteria, possibly of the genus Pseudomonas, are able to persist for long periods in host bacteriocytes. Subsequent to performing a previously established in…

EcologybiologyLipopolysaccharidep38 mitogen-activated protein kinasesPseudomonasAquatic Sciencebiology.organism_classificationVibrioMicrobiologySuberites domunculachemistry.chemical_compoundchemistryVibrionaceaeMitogen-activated protein kinasebiology.proteinEcology Evolution Behavior and SystematicsBacteriaMarine Biology
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Novel mechanism for the radiation-induced bystander effect: nitric oxide and ethylene determine the response in sponge cells.

2006

Until now the bystander effect had only been described in vertebrates. In the present study the existence of this effect has been demonstrated for the phylogenetically oldest metazoan phylum, the Porifera. We used the demosponge Suberites domuncula for the experiments in the two-chamber-system. The lower dish contained irradiated "donor" cells (single cells) and the upper dish the primmorphs ("recipient" primmorphs). The "donor" cells were treated with UV-B light (40 mJ/cm2) and 100 microM hydrogen peroxide (H2O2), factors that exist also in the natural marine aquatic environment of sponges; these factors caused a high level of DNA strand breaks followed by a reduced viability of the cells.…

EthyleneDNA ComplementaryDNA damageCell SurvivalUltraviolet RaysHealth Toxicology and MutagenesisMolecular Sequence DataGene ExpressionApoptosisBiologyNitric OxideModels BiologicalNitric oxideAmidohydrolaseschemistry.chemical_compoundGene expressionGeneticsBystander effectAnimalsAmino Acid SequenceCloning MolecularMolecular BiologyNitriteschemistry.chemical_classificationBase SequenceSequence Homology Amino AcidEthylenesbiology.organism_classificationCell biologyAmino acidPoriferaSuberites domunculachemistryBiochemistryApoptosisDNA DamageMutation research
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2001

Background Ethylene is a widely distributed alkene product which is formed enzymatically (e.g., in plants) or by photochemical reactions (e.g., in the upper oceanic layers from dissolved organic carbon). This gaseous compound was recently found to induce in cells from the marine sponge Suberites domuncula, an increase in intracellular Ca2+ level ([Ca2+]i) and an upregulation of the expression of two genes, the potential ethylene-responsive gene, SDERR, and a Ca2+/calmodulin-dependent protein kinase.

Ethylenebiologychemistry.chemical_elementCell BiologyCalciumbiology.organism_classification3T3 cellsCalcium in biologyCell biologySuberites domunculachemistry.chemical_compoundmedicine.anatomical_structureBiochemistrychemistryDownregulation and upregulationmedicineProtein kinase AIntracellularBMC Cell Biology
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Polarity factor 'Frizzled' in the demosponge Suberites domuncula: identification, expression and localization of the receptor in the epithelium/pinac…

2003

Until recently, it was assumed that polarity and axis formation have evolved only in metazoan phyla higher than Cnidaria. One key molecule involved in the signal transduction causing tissue polarity is Frizzled, a seven-transmembrane receptor that is activated by the Wnt family of secreted proteins. We report the isolation and characterization of a Frizzled gene from the demosponge Suberites domuncula (Sd-Fz). The deduced polypeptide comprises all characteristic domains known from Frizzled receptors of higher metazoans. In situ hybridization studies show that Sd-Fz is expressed in cells close to the surface of the sponges and in the pinacocytes of some canals. Northern blot analysis demonst…

FrizzledMolecular Sequence DataBiophysicsPinacodermReceptors Cell SurfaceBiochemistryEpitheliumDemospongeStructural BiologyGeneticsAnimalsNorthern blotAmino Acid SequenceMolecular BiologyIn Situ HybridizationPhylogenyCell AggregationbiologySequence Homology Amino AcidWnt signaling pathwayCell BiologyAnatomybiology.organism_classificationBlotting NorthernCell biologyPoriferaProtein Structure TertiaryUp-RegulationSuberites domunculaSpongeSignal transductionSignal TransductionFEBS letters
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Isolation and characterization of Wnt pathway-related genes from Porifera.

2006

The Wnt signal acts by binding to Frizzled receptors, with the subsequent activation of two different signal transduction cascades, the canonical and the non-canonical Wnt pathways, involved in cell growth, differentiation, migration and fate. The canonical pathway functions through the translocation of beta-catenin to the nucleus and the activation of TCF/LEF transcription factors; it plays an important role in developmental patterning and cell fate decisions during embryogenesis. The non-canonical Wnt pathway is responsible for the planar cell polarity process in invertebrates, and for the convergent-extension movements during vertebrate gastrulation. The final effect of the non-canonical…

FrizzledMyosin Light ChainsMolecular Sequence DataGTPaseCell fate determinationGlycogen Synthase Kinase 3AnimalsAmino Acid Sequencecdc42 GTP-Binding ProteinCells CulturedPhylogenybiologyGene Expression ProfilingWnt signaling pathwayIntracellular Signaling Peptides and ProteinsLRP6LRP5Cell BiologyGeneral Medicinebiology.organism_classificationFrizzled ReceptorsCell biologyPoriferaSuberites domunculaWnt ProteinsGene Expression RegulationSignal transductionTCF Transcription FactorsrhoA GTP-Binding ProteinCell biology international
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Expression pattern of the Brachyury and Tbx2 homologues from the sponge Suberites domuncula.

2005

Background information. T-box transcription factors are a large family of transcriptional regulators involved in many aspects of embryonic development. In a previous report, we described the isolation and genomic characterization of two T-box genes from the siliceous sponge Suberites domuncula: a Brachyury homologue, Sd-Bra, and a Tbx2 homologue, Sd-Tbx2. Elucidation of the genomic structure of Sd-Bra allowed us to demonstrate the existence of two different isoforms, resulting from alternative splicing. Moreover, we demonstrated that the shorter isoform exists in two different glycosylation states. Results. In the present study, we demonstrate a differential subcellular localization of the …

Gene isoformFetal ProteinsBrachyuryCytoplasmGlycosylationBlotting WesternAnimalsProtein IsoformsGeneTranscription factorCells CulturedGeneticsRegulation of gene expressionCell NucleusbiologyAlternative splicingCell BiologyGeneral Medicinebiology.organism_classificationImmunohistochemistryPoriferaSuberites domunculaAlternative SplicingGene Expression RegulationT-Box Domain ProteinsFunction (biology)Biology of the cell
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Analysis of the axial filament in spicules of the demosponge Geodia cydonium: different silicatein composition in microscleres (asters) and megascler…

2007

The skeleton of the siliceous sponges (Porifera: Hexactinellida and Demospongiae) is supported by spicules composed of bio-silica. In the axial canals of megascleres, harboring the axial filaments, three isoforms of the enzyme silicatein (-alpha, -beta and -gamma) have been identified until now, using the demosponges Tethya aurantium and Suberites domuncula. Here we describe the composition of the proteinaceous components of the axial filament from small spicules, the microscleres, in the demosponge Geodia cydonium that possesses megascleres and microscleres. The morphology of the different spicule types is described. Also in G. cydonium the synthesis of the spicules starts intracellularly …

Gene isoformSpiculeHistologyMorphology (linguistics)Molecular Sequence DataFlagellumPathology and Forensic MedicineDemospongeSponge spiculeSequence Analysis ProteinAnimalsAmino Acid SequenceTethya aurantiumCloning MolecularCytoskeletonPhylogenybiologyAnimal StructuresCell BiologyGeneral MedicineAnatomybiology.organism_classificationSilicon DioxideCathepsinsSuberites domunculaSolubilityGeodiaBiophysicsEuropean journal of cell biology
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