Search results for "THERMODYNAMICS"
showing 10 items of 2774 documents
Aging effects in glassy polymers: a Monte Carlo study
1996
Abstract By means of dynamic Monte Carlo simulation the physical aging of a glassy polymer melt is studied. The melt is simulated by a coarse-grained lattice model, the bond-fluctuation model, on a simple cubic lattice. In order to generate glassy freezing an energy is associated with long bonds, which leads to a competition between the energetically favored bond stretching and the local density of the melt at low temperatures. The development of this competition during the cooling process strongly slows down the structural relaxation and makes the melt freeze in an amorphous structure as soon as the internal relaxation time matches the time scale of the cooling rate. Therefore the model ex…
Fourth Moments and Independent Component Analysis
2015
In independent component analysis it is assumed that the components of the observed random vector are linear combinations of latent independent random variables, and the aim is then to find an estimate for a transformation matrix back to these independent components. In the engineering literature, there are several traditional estimation procedures based on the use of fourth moments, such as FOBI (fourth order blind identification), JADE (joint approximate diagonalization of eigenmatrices), and FastICA, but the statistical properties of these estimates are not well known. In this paper various independent component functionals based on the fourth moments are discussed in detail, starting wi…
On Limiting Fréchet ε-Subdifferentials
1998
This paper presents an e-sub differential calculus for nonconvex and nonsmooth functions. We extend the previous work by Jofre et all to the case where the functions are lower semicontinuous instead of locally Lipschitz.
Validity of the electroneutrality and goldman constant-field assumptions in describing the diffusion potential for ternary electrolyte systems in sim…
1986
Abstract Three numerical algorithms capable of simulating transport processes through simple, porous membranes in the steady state have been employed in order to study the change in the diffusion potential with the membrane thickness and the ionic concentrations for the ternary systems NaClHClH20 and CaCI2NaC1H 2 O. The first simulation procedure uses Poisson's equation, the two others replace this equation by the electroneutrality and Goldman constant-field approximations respectively. From the results presented here, conditions for the applicability of the electroneutrality and constantfield assumption to ternary electrolyte systems are given.
Diffusion and Migration
2003
The sections in this article are Introduction Fundamental Concepts Diffusion–migration Flux Equations Poisson Equation and the LEN Assumption Continuity Equation Ohm's Law and Migrational Transport Numbers Diffusion-conduction Flux Equation Diffusion Boundary Layer Faraday's Law and Integral Transport Numbers Nernst Equation and Concentration Overpotential Steady State Current–voltage Curves of Systems with One Active Species Integration of the Transport Equations Solutions of Homovalent Ions, |zi | =z Binary Electrolyte Solutions Ternary Electrolyte Solutions. The Supporting Electrolyte Weak Binary Electrolyte Steady State Current–overpotential Curves in the Presence of Supporting Electrol…
Generalised Maxwell-Garnett equation: application to electrical and chemical transport.
2006
In this paper we discuss the implementation of different equilibrium concentrations in each of the phases into the Maxwell-Garnett effective medium formula for diffusion in heterogeneous media. We put the derivation given by Kalnin et al., J. Phys. Chem. Solids, 2002, 63, 449, on safer grounds and extend it to non-dilute carrier concentrations. The relation to Maxwell’s mixing rule is also elaborated. It is shown that the formula can not only successfully be applied to conductivity problems but also to describe steady state chemical diffusion in heterogeneous media such as polycrystalline samples. The comparison with the brick layer model corroborates these points but also shows that—in the…
Binding isotope effects as a tool for distinguishing hydrophobic and hydrophilic binding sites of HIV-1 RT.
2014
The current treatment for HIV-1 infected patients consists of a cocktail of inhibitors, in an attempt to improve the potency of the drugs by adding the possible effects of each supplied compound. In this contribution, nine different inhibitors of HIV-1 RT, one of the three key proteins responsible for the virus replication, have been selected to develop and test a computational protocol that allows getting a deep insight into the inhibitors’ binding mechanism. The interaction between the inhibitors and the protein have been quantified by computing binding free energies through FEP calculations, while a more detailed characterization of the kind of inhibitor–protein interactions is based on …
Molecular topology applied to the discovery of 1-benzyl-2-(3-fluorophenyl)-4-hydroxy-3-(3-phenylpropanoyl)-2H-pyrrole-5-one as a non-ligand-binding-p…
2014
We report the discovery of 1-benzyl-2-(3- fluorophenyl)-4-hydroxy-3-(3-phenylpropanoyl)-2H-pyrrole- 5-one as a novel non-ligand binding pocket (non-LBP) antagonist of the androgen receptor (AR) through the application of molecular topology techniques. This compound, validated through time-resolved fluorescence resonance energy transfer and fluorescence polarization biological assays, provides the basis for lead optimization and structure−activity relationship analysis of a new series of non-LBP AR antagonists. Induced-fit docking and molecular dynamics studies have been performed to establish a consistent hypothesis for the interaction of the new active molecule on the AR surface. Refereed/…
Molecular recognition of naphthalene diimide ligands by telomeric quadruplex-DNA: the importance of the protonation state and mediated hydrogen bonds.
2016
In depth Monte Carlo conformational scans in combination with molecular dynamics (MD) simulations and electronic structure calculations were applied in order to study the molecular recognition process between tetrasubstituted naphthalene diimide (ND) guests and G-quadruplex (G4) DNA receptors. ND guests are a promising class of telomere stabilizers due to which they are used in novel anticancer therapeutics. Though several ND guests have been studied experimentally in the past, the protonation state under physiological conditions is still unclear. Based on chemical intuition, in the case of N-methyl-piperazine substitution, different protonation states are possible and might play a crucial …
Determination of the electron-detachment energies of 2'-deoxyguanosine 5'-monophosphate anion: influence of the conformation.
2009
The vertical electron-detachment energies (VDEs) of the singly charged 2'-deoxyguanosine 5'-monophosphate anion (dGMP - ) are determined by using the multiconfigurational second-order perturbation CASPT2 method at the MP2 ground-state equilibrium geometry of relevant conformers. The origin of the unique low-energy band in the gas phase photoelectron spectrum of dGMP - , with maximum at around 5.05 eV, is unambiguously assigned to electron detachment from the highest occupied molecular orbital of π-character belonging to guanine fragment of a syn conformation. The presence of a short H-bond linking the 2-amino and phosphate groups, the guanine moiety acting as proton donor, is precisely resp…