Search results for "TW"

showing 10 items of 16860 documents

Coupling agent-based with equation-based models to study spatially explicit megapopulation dynamics

2018

International audience; The incorporation of the spatial heterogeneity of real landscapes into population dynamics remains extremely difficult. We propose combining equation-based modelling (EBM) and agent-based modelling (ABM) to overcome the difficulties classically encountered. ABM facilitates the description of entities that act according to specific rules evolving on various scales. However, a large number of entities may lead to computational difficulties (e.g., for populations of small mammals, such as voles, that can exceed millions of individuals). Here, EBM handles age-structured population growth, and ABM represents the spreading of voles on large scales. Simulations applied to t…

0106 biological sciencesHybrid modellingTheoretical computer scienceComputer sciencePopulation[INFO.INFO-SE]Computer Science [cs]/Software Engineering [cs.SE]010603 evolutionary biology01 natural sciences[INFO.INFO-IU]Computer Science [cs]/Ubiquitous Computing[INFO.INFO-CR]Computer Science [cs]/Cryptography and Security [cs.CR]Travelling waveArvicolaPopulation growtheducation[SDV.EE]Life Sciences [q-bio]/Ecology environmenteducation.field_of_studySpatial contextual awareness010604 marine biology & hydrobiologyEcological ModelingDispersal15. Life on land[INFO.INFO-MO]Computer Science [cs]/Modeling and SimulationSpatial heterogeneityCoupling (computer programming)[INFO.INFO-MA]Computer Science [cs]/Multiagent Systems [cs.MA]Biological dispersalMontane ecology[INFO.INFO-ET]Computer Science [cs]/Emerging Technologies [cs.ET][INFO.INFO-DC]Computer Science [cs]/Distributed Parallel and Cluster Computing [cs.DC][SDE.BE]Environmental Sciences/Biodiversity and EcologyHybrid modelHybrid modelEcological Modelling
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Preferential induction of 20S proteasome subunits during elicitation of plant defense reactions: towards the characterization of "plant defense prote…

2003

Plants have evolved efficient mechanisms to resist pathogens. The earliest defense response is the hypersensitive response (HR) considered as the main step leading to plant systemic acquired resistance (SAR) that protects the whole plant against a large spectrum of pathogens. We showed previously that elicitation of defense reactions in tobacco cells by cryptogein, a proteinaceous elicitor of plant defense reactions, leads to a rapid and differential accumulation of transcripts corresponding to genes encoding defense-induced (din) subunits of 20S proteasome: beta1din, alpha3din and alpha6din.Here, expression of these three subunits was investigated by Northern blotting and by Western blotti…

0106 biological sciencesHypersensitive responseProteasome Endopeptidase Complex[SDV]Life Sciences [q-bio]Protein subunitBlotting WesternGene ExpressionBiology01 natural sciencesBiochemistryMixed Function OxygenasesFungal Proteins03 medical and health sciencesMultienzyme ComplexesTobaccoPlant defense against herbivoryElectrophoresis Gel Two-DimensionalNorthern blotComputingMilieux_MISCELLANEOUS030304 developmental biology0303 health sciencesAlgal ProteinsProteinsCell BiologyBlotting NorthernMolecular biologyCell biologyElicitor[SDV] Life Sciences [q-bio]BlotPlant LeavesTobacco Mosaic VirusCysteine EndopeptidasesProteasomeEnzyme InductionREPONSE DE LA PLANTESystemic acquired resistance010606 plant biology & botanyPeptide HydrolasesThe international journal of biochemistrycell biology
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From Metaphor to Practice: Operationalizing the Analysis of Resilience Using System Dynamics Modelling

2017

This paper operationalizes an analysis of resilience for social-ecological systems using system dynamics (SD) modelling. Resilience is a versatile concept that continues to gain popularity among researchers who study ways to reduce the vulnerability of social-ecological systems to a wide range of disturbances. However, its application in the policymaking domain still remains underdeveloped because it is difficult to understand the mechanisms that might enhance resilience and to measure the impact of potential policies. This paper proposes to use SD modelling as a tool to analyse resilience using simulations to quantify system response to disturbances and a causal analysis to identify ways t…

0106 biological sciencesInformation Systems and ManagementOperationalizationManagement scienceMetaphorStrategy and Managementmedia_common.quotation_subject05 social sciencesVulnerabilityGeneral Social Sciences01 natural sciencesPopularitySystem dynamics010601 ecology0502 economics and businessSocio-ecological systemSet (psychology)Resilience (network)Psychology050203 business & managementmedia_commonSystems Research and Behavioral Science
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Seaport competitiveness research: the past, present and future

2019

This study presents a review of articles with a focus on seaport competitiveness from the maritime literature. We investigated how port competitiveness research has evolved during the last two decades using bibliometric citation analysis tools and techniques. Bibliography data, collected from the ISI Web of Science database, consisted of 267 research papers by 465 authors in 117 journals. Based on citation analysis, we identified the key universities, journals and articles and their impact on port competitiveness research. Also, seven key research streams with few sub-streams were revealed as a result of a mixed co-citation and in-depth content analysis of the most cited articles. A bibliom…

0106 biological sciencesIsi web of scienceKey articlesKnowledge managementbusiness.industry010604 marine biology & hydrobiologyTransportation010501 environmental sciencesManagement Science and Operations Research01 natural sciencesPort (computer networking)Citation analysisContent analysisPolitical scienceManagement of Technology and InnovationKey (cryptography)Strategic researchPort managementBusiness and International ManagementbusinessGeneralLiterature_REFERENCE(e.g.dictionariesencyclopediasglossaries)0105 earth and related environmental sciencesInternational Journal of Shipping and Transport Logistics
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Preservation of viability and anti-Listeria activity of lactic acid bacteria, Lactococcus lactis and Lactobacillus paracasei, entrapped in gelling ma…

2015

In order to control undesirable microorganisms growth in foods, the performance of alginate and alginate-caseinate (an aqueous two-phase system) matrices entrapping lactic acid bacteria (LAB) (Lactobacillus paracasei LAB1 and Lactococcus lactis LAB3) was investigated. Polymeric matrices were initially loaded with Lcells at similar to 10(8-10) or similar to 10(4-6) CFU mL(-1), and were monitored, in liquid and gelled form (beads), for 12 days at 30 degrees C. In the liquid form, maximum cell density (similar to 10(9) CFU mL(-1)) was reached after 24 h whatever the matrix. Then, the Lpopulation decreased but remained higher in alginate-caseinate matrices: 10(7) and 10(6) CFU mL(-1) of LAB3 ce…

0106 biological sciencesLactobacillus paracaseiMicroorganismPopulation01 natural sciences03 medical and health scienceschemistry.chemical_compound010608 biotechnology[SDV.IDA]Life Sciences [q-bio]/Food engineeringLactic acid bacteriaanti-Listeria spp. activityFood scienceeducation0303 health scienceseducation.field_of_studybiology030306 microbiologyLactococcus lactisAntimicrobialbiology.organism_classificationLactic acidSodium caseinateBiochemistrychemistryListeriaAqueous two-phase systemSodium alginateEntrapmentBacteriaFood ScienceBiotechnology
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CRISPR-mediated strand displacement logic circuits with toehold-free DNA

2021

DNA nanotechnology, and DNA computing in particular, has grown extensively over the past decade to end with a variety of functional stable structures and dynamic circuits. However, the use as designer elements of regular DNA pieces, perfectly complementary double strands, has remained elusive. Here, we report the exploitation of CRISPR-Cas systems to engineer logic circuits based on isothermal strand displacement that perform with toehold-free double-stranded DNA. We designed and implemented molecular converters for signal detection and amplification, showing good interoperability between enzymatic and nonenzymatic processes. Overall, these results contribute to enlarge the repertoire of su…

0106 biological sciencesLetterTranscription GeneticComputer scienceStreptococcus pyogenesRibonuclease HBiomedical EngineeringDNA Single-StrandedNanotechnology01 natural sciencesBiochemistry Genetics and Molecular Biology (miscellaneous)Displacement (vector)law.invention03 medical and health sciencesSynthetic biologychemistry.chemical_compoundComputers MolecularDNA computinglaw010608 biotechnologyCRISPR-Associated Protein 9Biological computingDNA nanotechnologyCRISPRNanotechnologyClustered Regularly Interspaced Short Palindromic RepeatsGene Regulatory NetworksDNA nanotechnologySynthetic biology030304 developmental biologyElectronic circuit0303 health sciencesGeneral MedicineRibonuclease PancreaticchemistryLogic gatebiological computingsynthetic biologyCRISPR-Cas SystemsEndopeptidase KGenetic EngineeringDNARNA Guide Kinetoplastida
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Reverse-engineering the Arabidopsis thaliana transcriptional network under changing environmental conditions

2009

46 pages, 4 tables, 6 figures, 3 additinoal files.

0106 biological sciencesMESH: Genome PlantArabidopsis thalianaGene regulatory networkArabidopsis01 natural sciencesTranscriptomeGene Expression Regulation PlantArabidopsisMESH: Gene Expression Regulation DevelopmentalCluster AnalysisGene Regulatory NetworksMESH: ArabidopsisMESH: EcosystemMESH: Models GeneticOligonucleotide Array Sequence AnalysisMESH: Gene Regulatory NetworksGenetics0303 health sciencesMESH: Stress MechanicalbiologyMESH: Genomicsfood and beveragesGene Expression Regulation DevelopmentalGenomicsPhenotypeAlgorithmsGenome PlantMESH: MutationSystems biologyGenomicsMESH: AlgorithmsComputational biologyMESH: Arabidopsis ProteinsMESH: Phenotype03 medical and health sciencesMESH: Gene Expression Profiling[SDV.BBM]Life Sciences [q-bio]/Biochemistry Molecular BiologyMESH: Gene Expression Regulation PlantEcosystem030304 developmental biologyModels GeneticMicroarray analysis techniquesArabidopsis ProteinsGene Expression ProfilingResearchfungiRobustness (evolution)biology.organism_classificationMESH: Cluster AnalysisGene expression profilingMutationMESH: Oligonucleotide Array Sequence AnalysisStress Mechanical010606 plant biology & botany
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The effects of data collection and observation methods on uncertainty of social networks in wild primates

2020

International audience; In social species, network centralities of group members shape social transmission and other social phenomena. Different factors have been found to influence the measurement of social networks, such as data collection and observation methods. In this study, we collected data on adults and juveniles and examined the effect of data collection method (ad libitum sampling vs. focal animal sampling) and observation method (interaction—grooming; play—vs. association—arm‐length; 2 m; 5 m proximities—) on social networks in wild vervet monkeys. First, we showed using a bootstrapping method, that uncertainty of ad libitum grooming and play matrices were lesser than uncertaint…

0106 biological sciencesMaleComputer sciencePooling010603 evolutionary biology01 natural sciencesCorrelationStatisticsChlorocebus aethiopsAnimals0501 psychology and cognitive sciences050102 behavioral science & comparative psychologyProxy (statistics)Social BehaviorSocial network analysisEcology Evolution Behavior and SystematicsSocialityData collectionBehavior AnimalBootstrappingData Collection05 social sciencesSampling (statistics)GroomingPlay and Playthings[SDE]Environmental SciencesAnimal Science and ZoologyFemaleBehavior Observation Techniques
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The consistency of individual centrality across time and networks in wild vervet monkeys

2021

Previous primate social network studies largely limited their focus to grooming and/or aggression networks, particularly among adult females. In addition, the consistency of individuals' network centrality across time and/or different networks has received little attention, despite this being critical for a global understanding of dynamic social structure. Here, we analyzed the grooming, aggression, and play social networks of a group of 26-28 wild vervet monkeys (Chlorocebus pygerythrus), including adults and juveniles, over two periods of 6 months. We collected data on grooming, play, and aggression using focal animal sampling with instantaneous recording and ad libitum sampling. We exami…

0106 biological sciencesMaleEigenvector centrality010603 evolutionary biology01 natural sciencesSouth AfricaConsistency (negotiation)biology.animalChlorocebus aethiopsmedicineJuvenileAnimals0501 psychology and cognitive sciencesPrimate050102 behavioral science & comparative psychologySocial BehaviorEcology Evolution Behavior and SystematicsComputingMilieux_MISCELLANEOUSSocial networkbiologyBehavior Animalbusiness.industryAggressionSciences du Vivant [q-bio]/Ecologie Environnement05 social sciencesGrooming[SDE.ES]Environmental Sciences/Environmental and SocietyPlay and PlaythingsAggressionDominance (ethology)Animal Science and ZoologyFemalemedicine.symptombusinessCentralityPsychologyDemography
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Identifying small pelagic Mediterranean fish schools from acoustic and environmental data using optimized artificial neural networks

2019

Abstract The Common Fisheries Policy of the European Union aims to exploit fish stocks at a level of Maximum Sustainable Yield by 2020 at the latest. At the Mediterranean level, the General Fisheries Commission for the Mediterranean (GFCM) has highlighted the importance of reversing the observed declining trend of fish stocks. In this complex context, it is important to obtain reliable biomass estimates to support scientifically sound advice for sustainable management of marine resources. This paper presents a machine learning methodology for the classification of pelagic species schools from acoustic and environmental data. In particular, the methodology was tuned for the recognition of an…

0106 biological sciencesMarine conservationMaximum sustainable yieldFish stockFish school010603 evolutionary biology01 natural sciencesAcoustic surveyEnvironmental dataAnchovymedia_common.cataloged_instanceEuropean unionEcology Evolution Behavior and Systematicsmedia_commonEcologybiologySettore INF/01 - Informaticabusiness.industry010604 marine biology & hydrobiologyApplied MathematicsEcological ModelingEnvironmental resource managementPelagic zonebiology.organism_classificationClassificationComputer Science ApplicationsGeographyComputational Theory and MathematicsFishing industryModeling and SimulationbusinessNeural networks
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