Search results for "Taxonomic rank"
showing 10 items of 45 documents
Are biological classifications of headwater streams concordant across multiple taxonomic groups?
2003
Summary 1. Studies assessing human impacts on freshwater ecosystems are typically based on a single taxonomic group, often macroinvertebrates or fish. Unfortunately, the degree to which such macroinvertebrate or fish-based surveys can be generalised across other taxonomic groups remains largely unknown. A prerequisite for useful generalisations is that different taxonomic groups exhibit concordant patterns of community structure across sites. 2. We examined the concordance among fish, benthic macroinvertebrates and bryophytes in 32 streams in a boreal catchment in Finland. Our goal was to test how consistently different taxonomic groups classify stream sites; for example, can site groupings…
Hybridization in Capparis spinosa L.: Molecular and morphological evidence from a Mediterranean island complex
2014
Inter-Simple Sequence Repeat (ISSR) molecular markers and morphological analysis were used in order to characterize wild populations and cultivated forms of orphan crop species Capparis spinosa L. in a Mediterranean island complex. Nineteen wild populations belonging to two different subspecies, C. spinosa subsp. spinosa and subsp. rupestris, were sampled in different environments in Sicily and the surrounding islets Lampedusa, Pantelleria and Salina. Different biotypes cultivated in Pantelleria and Salina were analyzed. Six ISSR primers were selected for genetic characterization, and all clear and reproducible bands were scored and analyzed. Among the 47 ISSR bands obtained, 97.5% were pol…
Microbial Succession in the Gut: Directional Trends of Taxonomic and Functional Change in a Birth Cohort of Spanish Infants
2014
In spite of its major impact on life-long health, the process of microbial succession in the gut of infants remains poorly understood. Here, we analyze the patterns of taxonomic and functional change in the gut microbiota during the first year of life for a birth cohort of 13 infants. We detect that individual instances of gut colonization vary in the temporal dynamics of microbiota richness, diversity, and composition at both functional and taxonomic levels. Nevertheless, trends discernible in a majority of infants indicate that gut colonization occurs in two distinct phases of succession, separated by the introduction of solid foods to the diet. This change in resource availability causes…
Spatial and Temporal Patterns in the Evolution of the Flora of the European Alpine System
2003
This paper presents a perspective of how phylogenetic and phylogeographic hypotheses, based on nuclear DNA sequence variation (ITS) or amplified fragment length polymorphisms (AFLPs), can provide insights into the origin and evolution of the European high mountain flora. We focus on a diversity of unrelated herbaceous plant taxa that are broadly co-distributed across the European Alpine System, representing different taxonomic levels, and having either Mediterranean or Asian affinities (i.e., Anthyllis montana, Pritzelago alpina, Globularia vs. Soldanella, and Primula sect. Auricula). Our observations highlight that all taxa investigated began to diversify at the beginning of the Pleistocen…
Molecular analysis ofPhytophthoradiversity in nursery-grown ornamental and fruit plants
2015
The genetic diversity of Phytophthora spp. was investigated in potted ornamental and fruit tree species. A metabarcoding approach was used, based on a semi-nested PCR with Phytophthora genus-specific primers targeting the ITS1 region of the rDNA. More than 50 ITS1 sequence types representing at least 15 distinct Phytophthora taxa were detected. Nine had ITS sequences that grouped them in defined taxonomic groups (P. nicotianae, P. citrophthora, P. meadii, P. taxon Pgchlamydo, P. cinnamomi, P. parvispora, P. cambivora, P. niederhauserii and P. lateralis) whereas three phylotypes were associated to two or more taxa (P. citricola taxon E or III; P. pseudosyringae, P. ilicis or P. nemorosa; and…
Disentangling temporal patterns in our perception of the fossil history of gymnosperms
2012
By taking gymnosperms as a case study, this article evaluates the perception of plant life history from the fossil record to test the biases associated with the time-dependent aspects of the taxonomy, following a stepwise modelling procedure based on two divergent sets of time units. The idea that the effects of the temporal component of paleobiological inference need to be evaluated to remove any possible bias in our interpretation and perception of plant evolution based on analyses of large-scale data sets is investigated. The results reveal important differences in our perception of the tempo of gymnosperm evolution and how it is biased in terms of time unit length due to the loss of inf…
The test skeletal matrix of the black sea urchin Arbacia lixula
2015
11 pages; International audience; In the field of biomineralization, the past decade has been marked by the increasing use of high throughput techniques, i.e. proteomics, for identifying in one shot the protein content of complex macromolecular mixtures extracted from mineralized tissues. Although crowned with success, this approach has been restricted so far to a limited set of key-organisms, such as the purple sea urchin Strongylocentrotus purpuratus, the pearl oyster or the abalone, leaving in the shadow non-model organisms. As a consequence, it is still unknown to what extent the calcifying repertoire varies, from group to group, at high (phylum, class), median (order, family) or low (g…
Long-term phenological data set of multi-taxonomic groups, agrarian activities, and abiotic parameters from Latvia, northern Europe
2021
A phenological data set collected by citizen-scientists from 1970 to 2018 in Latvia is presented, comprising almost 47,000 individual observations of eight taxonomical groups, in addition to agrarian activities and abiotic parameters, covering in total 159 different phenological phases. These original data published offline in annual issues of the Nature and History Calendar (in Latvian, Dabas un vēstures kalendārs) have been digitized, harmonized and geo-referenced. Overall, the possible use of such data is extensive, as phenological data are excellent bioindicators for characterising climate change and can be used for the elaboration of adaptation strategies in agriculture, forestry, and …
Flawed Meta-Analysis of Biodiversity Effects of Forest Management
2010
It appears that the negative effect of forest managementon biodiversity has become an axiom. Whether the neg-ative effect, however, is a fact based on solid empiricalevidence is not self-evident. Most of the studies that ad-dress the issue suffer from a lack of geographic extentand taxonomic narrowness. Therefore, a synthesis draw-ing together results from the individual studies is direlyneeded. In their recent paper, Paillet et al. (2010) rise tothis challenge and present a formal pan-European meta-analysis of data from 49 papers representing 120 indi-vidual comparisons across 10 taxonomic groups. Theirsynthesis has the potential to be a landmark paper inecological research, but also to af…
Comparing biological classifications of freshwater phytoplankton: a case study from South China
2012
The use of ecological classification systems is becoming more and more widely used when studying phytoplankton. Grouping phytoplankton species into ecologically coherent groups allow to reduce redundancy and in this way, to handle a minor number of biological variables when investigating the ecological status of aquatic ecosystems. Three ecological classifications are mostly used when freshwater phytoplankton is studied: functional groups or coda, morpho-functional groups (MFGs) and morphology-based functional groups (MBFGs). In this study, these three ecological classifications were comparatively used along with two taxonomic classifications based on species and genera to analyse phytoplan…