Search results for "Time complexity"
showing 10 items of 99 documents
Positive Versions of Polynomial Time
1998
Abstract We show that restricting a number of characterizations of the complexity class P to be positive (in natural ways) results in the same class of (monotone) problems, which we denote by posP . By a well-known result of Razborov, posP is a proper subclass of the class of monotone problems in P . We exhibit complete problems for posP via weak logical reductions, as we do for other logically defined classes of problems. Our work is a continuation of research undertaken by Grigni and Sipser, and subsequently Stewart; indeed, we introduce the notion of a positive deterministic Turing machine and consequently solve a problem posed by Grigni and Sipser.
Noise-tolerant efficient inductive synthesis of regular expressions from good examples
1997
We present an almost linear time method of inductive synthesis restoring simple regular expressions from one representative (good) example. In particular, we consider synthesis of expressions of star-height one, where we allow one union operation under each iteration, and synthesis of expressions without union operations from examples that may contain mistakes. In both cases we provide sufficient conditions defining precisely the class of target expressions and the notion of good examples under which the synthesis algorithm works correctly, and present the proof of correctness. In the case of expressions with unions the proof is based on novel results in the combinatorics of words. A genera…
Efficient learning of regular expressions from good examples
1994
We consider the problem of restoring regular expressions from expressive examples. We define the class of unambiguous regular expressions, the notion of the union number of an expression showing how many union operations can occur directly under any single iteration, and the notion of an expressive example. We present a polynomial time algorithm which tries to restore an unambiguous regular expression from one expressive example. We prove that if the union number of the expression is 0 or 1 and the example is long enough, then the algorithm correctly restores the original expression from one good example. The proof relies on original investigations in theory of covering symbol sequences (wo…
Knot Theory, Jones Polynomial and Quantum Computing
2005
Knot theory emerged in the nineteenth century for needs of physics and chemistry as these needs were understood those days. After that the interest of physicists and chemists was lost for about a century. Nowadays knot theory has made a comeback. Knot theory and other areas of topology are no more considered as abstract areas of classical mathematics remote from anything of practical interest. They have made deep impact on quantum field theory, quantum computation and complexity of computation.
"Indexing structures for approximate string matching
2003
In this paper we give the first, to our knowledge, structures and corresponding algorithms for approximate indexing, by considering the Hamming distance, having the following properties. i) Their size is linear times a polylog of the size of the text on average. ii) For each pattern x, the time spent by our algorithms for finding the list occ(x) of all occurrences of a pattern x in the text, up to a certain distance, is proportional on average to |x| + |occ(x)|, under an additional but realistic hypothesis.
Pattern Matching and Pattern Discovery Algorithms for Protein Topologies
2001
We describe algorithms for pattern-matching and pattern-learning in TOPS diagrams (formal descriptions of protein topologies). These problems can be reduced to checking for subgraph isomorphism and finding maximal common subgraphs in a restricted class of ordered graphs. We have developed a subgraph isomorphism algorithm for ordered graphs, which performs well on the given set of data. The maximal common subgraph problem then is solved by repeated subgraph extension and checking for isomorphisms. Despite its apparent inefficiency, this approach yields an algorithm with time complexity proportional to the number of graphs in the input set and is still practical on the given set of data. As a…
Words and forbidden factors
2002
AbstractGiven a finite or infinite word v, we consider the set M(v) of minimal forbidden factors of v. We show that the set M(v) is of fundamental importance in determining the structure of the word v. In the case of a finite word w we consider two parameters that are related to the size of M(w): the first counts the minimal forbidden factors of w and the second gives the length of the longest minimal forbidden factor of w. We derive sharp upper and lower bounds for both parameters. We prove also that the second parameter is related to the minimal period of the word w. We are further interested to the algorithmic point of view. Indeed, we design linear time algorithm for the following two p…
Two shortest path metrics on well-formed parentheses strings
1996
We present an analysis of two transformations on well-formed parentheses strings. Using a lattice approach, the corresponding least-move distances are computable, the first in linear time and the second in quadratic time.
Forbidden Factors and Fragment Assembly
2001
In this paper methods and results related to the notion of minimal forbidden words are applied to the fragment assembly problem. The fragment assembly problem can be formulated, in its simplest form, as follows: reconstruct a word w from a given set I of substrings (fragments ) of a word w . We introduce an hypothesis involving the set of fragments I and the maximal length m(w) of the minimal forbidden factors of w . Such hypothesis allows us to reconstruct uniquely the word w from the set I in linear time. We prove also that, if w is a word randomly generated by a memoryless source with identical symbol probabilities, m(w) is logarithmic with respect to the size of w . This result shows th…
O(n 2 log n) Time On-Line Construction of Two-Dimensional Suffix Trees
2005
The two-dimensional suffix tree of an n × n square matrix A is a compacted trie that represents all square submatrices of Ai¾?[9]. For the off-line case, i.e., A is given in advance to the algorithm, it is known how to build it in optimal time, for any type of alphabet sizei¾?[9,15]. Motivated by applications in Image Compressioni¾?[18], Giancarlo and Guaianai¾?[12] considered the on-line version of the two-dimensional suffix tree and presented an On2log2n-time algorithm, which we refer to as GG. That algorithm is a non-trivial generalization of Ukkonen's on-line algorithm for standard suffix trees [19]. The main contribution in this paper is an Olog n factor improvement in the time complex…