Search results for "Tree"
showing 10 items of 1841 documents
Evolutionary history of two allopatric Terricola species (Arvicolinae, Rodentia) from molecular, morphological, and palaeontological data
2008
To investigate the phylogenetic and phylogeographical relationships of arvicolines, we use several Western European ground voles. More particularly, our study is focused on Microtus (Terricola) savii and M. (T.) pyrenaicus. These two allopatric species are usually considered as having originated from the same ancestor, possibly M. (T.) mariaclaudiae. We propose molecular and morphological approaches: nucleotidic data from the mitochondrial cytochrome b and 12S rRNA genes and global morphological analyses from the first lower molar. Four other Terricola species (multiplex, lusitanicus, duodecimcostatus, subterraneus) were added to the data set for both analyses, and two other vole species (C…
Much more than a clasp: evolutionary patterns of amplexus diversity in anurans
2020
AbstractThe evolution and diversification of animal reproductive modes have been pivotal questions in behavioural ecology. Amphibians present the highest diversity of reproductive modes among vertebrates, involving various behavioural, physiological and morphological traits. One such feature is the amplexus, which is the clasp or embrace of males on females during reproduction and is found almost universally in anurans. Hypotheses about the origin of amplexus are limited and have not been tested thoroughly, nor have they taken into account evolutionary relationships in most comparative studies. However, these considerations are crucial to an understanding of the evolution of reproductive mo…
Cryptic species unveiled: the case of the nematode Spauligodon atlanticus
2013
The implementation of molecular tools in parasitology has led to the discovery of numerous cryptic species. However, detailed morphological studies are needed to evaluate the cryptic nature of such species, as well as to provide an appropriate and formal description. Recent phylogenetic analyses using mitochondrial and nuclear genes have revealed that the nematode Spauligodon atlanticus, parasite of lizards of the genus Gallotia endemic to the Canary Islands, consists of two highly divergent and unrelated lineages, one in the eastern islands and the other in the western ones. This study provides a detailed morphological analysis of the two S. atlanticus lineages characterized genetically, b…
Remarkable ancient divergences amongst neglected lorisiform primates
2015
Lorisiform primates (Primates: Strepsirrhini: Lorisiformes) represent almost 10% of the living primate species and are widely distributed in sub-Saharan Africa and South/South-East Asia; however, their taxonomy, evolutionary history, and biogeography are still poorly understood. In this study we report the largest molecular phylogeny in terms of the number of represented taxa. We sequenced the complete mitochondrial cytochrome b gene for 86 lorisiform specimens, including ∼80% of all the species currently recognized. Our results support the monophyly of the Galagidae, but a common ancestry of the Lorisinae and Perodicticinae (family Lorisidae) was not recovered. These three lineages have ea…
Phylogeography of two cryptic species of African desert jerboas (Dipodidae: Jaculus)
2012
The lesser Egyptian jerboa Jaculus jaculus is a desert dwelling rodent that inhabits a broad Arabian–Saharan arid zone. Recently, two distant sympatric lineages were described in North-West Africa, based on morphometric and molecular data, which may correspond to two cryptic species. In the current study, phylogenetic relationships and phylogeographical structure among those lineages and geographical populations from North Africa and the Middle East were investigated. The phylogeographical patterns and genetic diversity of the cytochrome b gene (1110 bp) were addressed on 111 jerboas from 41 localities. We found that the variation in Africa is partitioned into two divergent mitochondrial cl…
Diversity and endemism of woody plant species in the Equatorial Pacific seasonally dry forests
2009
The biodiversity hotspot of the Equatorial Pacific region in western Ecuador and northwestern Peru comprises the most extensive seasonally dry forest formations west of the Andes. Based on a recently assembled checklist of the woody plants occurring in this region, we analysed their geographical and altitudinal distribution patterns. The montane seasonally dry forest region (at an altitude between 1,000 and 1,100 m, and the smallest in terms of area) was outstanding in terms of total species richness and number of endemics. The extensive seasonally dry forest formations in the Ecuadorean and Peruvian lowlands and hills (i.e., forests below 500 m altitude) were comparatively much more specie…
How challenging RADseq data turned out to favor coalescent-based species tree inference. A case study in Aichryson (Crassulaceae)
2022
Analysing multiple genomic regions while incorporating detection and qualification of discordance among regions has become standard for understanding phylogenetic relationships. In plants, which usually have comparatively large genomes, this is feasible by the combination of reduced-representation library (RRL) methods and high-throughput sequencing enabling the cost effective acquisition of genomic data for thousands of loci from hundreds of samples. One popular RRL method is RADseq. A major disadvantage of established RADseq approaches is the rather short fragment and sequencing range, leading to loci of little individual phylogenetic information. This issue hampers the application of coa…
Evolution of the Globin Gene Family in Deuterostomes: Lineage-Specific Patterns of Diversification and Attrition
2012
In the Metazoa, globin proteins display an underlying unity in tertiary structure that belies an extraordinary diversity in primary structures, biochemical properties, and physiological functions. Phylogenetic reconstructions can reveal which of these functions represent novel, lineage-specific innovations, and which represent ancestral functions that are shared with homologous globin proteins in other eukaryotes and even prokaryotes. To date, our understanding of globin diversity in deuterostomes has been hindered by a dearth of genomic sequence data from the Ambulacraria (echinoderms + hemichordates), the sister group of chordates, and the phylum Xenacoelomorpha, which includes xenoturbel…
The effects of drainage and restoration of pine mires on habitat structure, vegetation and ants
2016
Habitat loss and degradation are the main threats to biodiversity worldwide. For example, nearly 80% of peatlands in southern Finland have been drained. There is thus a need to safeguard the remaining pristine mires and to restore degraded ones. Ants play a pivotal role in many ecosystems and like many keystone plant species, shape ecosystem conditions for other biota. The effects of mire restoration and subsequent vegetation succession on ants, however, are poorly understood. We inventoried tree stands, vegetation, water-table level, and ants (with pitfall traps) in nine mires in southern Finland to explore differences in habitats, vegetation and ant assemblages among pristine, drained (30…
Phylogeny of the ant genus Aphaenogaster (Hymenoptera: Formicidae) in the Iberian Peninsula, with the description of a new species
2018
A phylogenetic tree of the Iberian Aphaenogaster species - except for A. splendida (Roger) - and a key to the worker caste of all Iberian Aphaenogaster species are proposed. The position of A. striativentris Forel and A. cardenai Espadaler is discussed, stating the possibility that this second species may belong to a new, undescribed genus. Aphaenogaster ulibeli n. sp. is described from the Iberian Peninsula. Its closest relatives are A. gibbosa (Latreille) and A. striativentris. Its habitat seems to be restricted to caducifolia forests in the Western Central Massif.